Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           ----------->HVH21                                                         --------->MYB46(3)         --------->ANAC58                            --------->At4g35610         --------->ANAC58                            <---------At4g35610 -------->ICU4                                <------ZmHOX2a(1)         <---------ZAT6 --------TOE2(3)                      <------ZmHOX2a(2)  --------->DEAR3(1)                   ------- ------AHL20(2)                       ===============HOX2a_HOX2a  --------->ZAT6              <------ ---->AHL20(2)                       --------->ARR11(3) --------->At4g35610                 --------- -----DOF2  ---------->DOF2          <---------ARR11(3) <---------At4g35610              ------->TEIL   taatgtttaaaacggaaagaatgtgagaaactacttacagatcatcgaggaatttagcagcgaccatgacactagtgatgagaagacgatggacgttaaa  18450100                                                                                                  ---                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              <------                                                              --------->ANAC58                -------                                                         ------->GAMYB                        <------                                                        --------->DEAR3(1)                    <------                                                        --------->MYB46(3)                    -------                                                   --------->ANAC58                   <---------ARR14(2)                                                   --------->ANAC58                   --------->ARR14(2)                                                   --------->ANAC46                <---------ANAC46                                               --------->ANAC58                    <---------ANAC58                                               --------->ANAC46        ==============================   --------->ATHB12                            --------->ANAC58        ============================== --->DOF2      <---------TOE2(3)              <---------TOE2(3)        <------ZmHOX2a(1)    --------- ---DOF5.7(2)  <---------TOE1(3)           --------->CCA1(2)  --------->ANAC58     --------->ANAC55(2) >DOF5.7(2) ----------->HVH21        <------ZmHOX2a(2)--------->MYB52(1)           <---------ANAC58   ggaattgatgggaagtgaaggttgtctgtgagtgaaacgatcgagataaacgtaagcaacgacgaagcaagaaggactacaatttgcgtatttgaagatc  18450200    --------->STY1(2) --->ZmHOX2a(1) ->ZmHOX2a(2) -ZmHOX2a(2)                  <---------WRKY38(1)                                        <---------ARR11(3) -----ARR10                   --------->ETT(2)                                           --------->ARR14(2) ---GLK1(2)                <------MYB46(1)                                               <---------ARR14(2) -->ARR11(3)               <------MYB83                                                  --------->ARR11(3) ---ARR11(3)               <---------MYB46(3)                                       <-----------HVH21 -->ARR14(2)              <---------AtMYB61                                       <---------MYB46(3) ---ARR14(2)             <---------MYB52(1)                                       <---------DEAR3(2) ---ARR14(3)          <---------TOE2(3)                                       --------->TGA1a -->ARR14(3)          <---------YAB1                                          <---------O2 ------>ZmHOX2a(2) =HOX2a_HOX2a        <---------DOF5.7(2)                                      <---------TGA1a ==HOX2a_HOX2a     --------->DOF5.7(2)    --------->AtLEC2    ----------->HVH21<-----------HVH21 -->ARR10        --------->YAB1           --------->ANAC46   <-----------HVH21--------->O2<------ZmHOX2a(2)   ctctctagatagctctgaatcgttatcgttggtcgactcagtccatgaaacaccgaaactctctgtgactgagtcgcgactcgtcgggtcagatcgtttg  18450300                                                                                   <---------ANAC58                                                                       ------>NtERF2                                                                       --------->LBD16                                                                      --------->ANAC58                                                                      --------->ANAC46                                                                      --------->ANAC58                    --------->YAB1                                   <---------LBD16                   --------->ICU4                                  --------->ARR14(2)                   <---------ATHB12    --------->At4g35610         <---------ARR14(2)    ----------->HVH21              --------->ANAC58         <---------At4g35610<---------ARR14(2)       <---------ANAC58              --------->ANAC58         --------->ZAT2     --------->ARR14(2)       <---------ANAC46  <---------At4g35610    --------->CCA1(2)                <---------GLK1(2)  <---------AHL20(2)   actcagcaactcgctctagcaatgaagataagaatgctatcagcttcgacattacacttggattctcaagttccgccatttttttgtgtgtatgacagag  18450400                                                                            <---------ANAC58                                                                            <---------ANAC58                                                                            <---------ANAC46                  <---------DAG2                                          *TSS                      <               <-----------GT1                                   <-------GAMYB--------->ALFIN1<------            ----------->GT1                                     <-----------RAV1(1)          --------           --------->DAG2                                   --------->ZAT14 <---------bZIP60(2) <----          ---------->DOF2      ------>ZmHOX2a(2)            <---------ZAT14 <---------ANAC55(1)<-----   ----------->GT1<----------DOF2  <---------ATHB12         <---------At4g35610            <------MYB46(1) ---------->DOF2  <---------------AGL15             <----------DOF2<---------MYB46(3)      <------MYB83   agagaaagaaaaaaaagttacttttttgtgtgatctaatgaagaagagtcttctctttgttctgctctgttgttaatggcgtgtgtgttaagttggtcgt  18450500                             <---------AHL20(2)                        --------->AHL20(2)                   <---------YAB1                 <---------AHL20(2)  <---------YAB1            <---------AHL20(2)             --------->AHL20(2)   <---------AHL20(1)   --------->YAB1            --------->ICU4   --------->AHL20(2)        <---------ICU4         --------->ICU4 <---------AHL20(2)       --------->ANAC55(2) ------------CBF--------->AHL20(2)--------->AHL20(2)  --------->ICU4 ---MYB46(3)<---------YAB1   <---------AHL20(1)  ----------->GT1                                  <-- -->ID1----------->GT1  <---------AHL20(1)       <---------ANAC55(2) <-----------GT1   <------ZmHOX2a(1) -----MYB52(1)  <---------AHL20(2)<---------AHL20(2)--------->YAB1 <---------AHL20(2)<---------TOE2(3) --GAMYB<-------GAMYB<---------AHL20(2)  ----------->GT1<---------TOE2(3)      <---------------AGL15   tatattgggcagttattatttattattttattttattttatttttgtaaataagtaataatgtttttattttatccaaattcaattttaggaatgtgtct  18450600                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                              --------->TCP20                                                           --------->ALFIN1                                                          <------NtERF2                                                          <-------GAMYB                                                         <---------DEAR3(2)                                                         <---------MYB46(3)                                                        <---------DREB2C(2)                                                        <---------DEAR3(1)                                                       --------->ATERF1(1)                                                       <------NtERF2                                                       <---------ABI4(1)                                                      <---------ERF1                                                      <---------ORA47(2)                                                      <---------RAP2.3(1)                                                      ------>NtERF2                                                      <---------DEAR3(2)                                                     <---------DEAR3(1)                                                     <---------At1g77200          --------->YAB1                                                     <---------DREB2C(2)    ------>MYB46(1)                      --------->ATHB12            --------->DEAR3(1)        ------>MYB83         <---------AHL20(2)           --------->ZAT6 <---------RAP2.3(3)  <---------MYB59        --------->AHL20(2)          <-----------GT1<-----------HVH21      --------->AtMYB61 --------DOF2  <---------ZAT6  --------->ICU4   <---------At5g28300 ---------->DOF2      <---------YAB1   cttttggattttaaattgtgttattcattagtagtcattaactcttctatcaccgtcggcggtggaaccgaaaagaccaaactatagtagtatttttgaa  18450700                                                    --------->ATHB12                                                   --------->ICU4                                                   <---------YAB1                                                 -------->HAHB4                           ----------->GT1       --------->ATHB12                           <---------ANAC46      <---------ICU4                      <-----------RAV1(1)        --------->YAB1                 --------->ANAC46               <---------ATHB12            --------->ARR14(2)                  --------->ICU4                                  -----            <---------ARR14(2)                  <---------YAB1                                  <----            ---------->TaMYB80        <-----------GT1   <---------AHL20(2)                      <----      --------->TOE2(3) --------->ALFIN1       <---------TOE2(3)                     ----------->GT1   aatgaaaacattagtatatgcgaaatgtggggtttatatttcacaagttaatgattattgaatttgaaaacttaagttctaacaagagggaaacacaatt  18450800                                               --------->ARR14(2)                                               <---------ARR14(2)                                              <---------CCA1(2)                                    --------->ANAC58                                    --------->YAB1                <---------AHL20(2)   --------->ANAC55(2)                                    --------->ANAC58              --------->AHL20(2)  <---------TOE2(3)           ----------->RAV1(1)      ----------->GT1              --------->AHL20(2)   --------->MYB59        --------->ANAC46            --------->ANAC55(2)       --------->YAB1          <---------TOE1(3) ----------->GT1                    --------->ANAC55(1)--------->YAB1             <----------DOF2 ---->AHL20(2)                      --------->ANAC46   <---------ICU4        <---------At4g35610 -----ICU4--------->ANAC46         <---------TOE2(3)  <---------ATHB12  --------->ANAC55(2) -----AHL20(2)                  --------->CCA1(2)  ------>ZmHOX2a(1)    <---------ANAC55(2)   aatgcgttaaacacaacatatcaaatcgacacagataaacgtaatatcgtatcctaatcaatatttataaaattatgtaatctgattttaggtaatccat  18450900                <-------TEIL             --------->ATHB12         <---------ARR11(3)            <---------YAB1            --------->ARR11(3)            --------->ICU4           <---------CCA1(2)                  --------->LBD16         --------->TGA2(2)    --------->ANAC58                         <---------ANAC46        <-----------TGA1      --------->ANAC55(1)                     <---------LBD16       --------->ANAC58       --------->ANAC55(2)                   <------------AtMYB77       --------->ANAC46       --------->ANAC46                     <---------At5g28300       --------->bZIP60(2)    --------->ANAC58                    --------->MYB52(1)             <---       --------->ANAC58   --------->CCA1(2)                --------->YAB1   --------->YAB1     <-----   agtttatctacgtcatgattcatgaaatatacacgttatatatctacaaatttagaaactatcagaagtaactgcggatgataacgcgaagttttattta  18451000  Previous    Next  AGI:  At2g44740.1    Description:  CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase. Identical to Cyclin-U4-1 (CYCU4-1) [Arabidopsis Thaliana] (GB:O80513); similar to CYCP4,3 (cyclin p4,3), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G07450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70506.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin, N-terminal (InterPro:IPR006671); contains InterPro domain Cyclin-like (InterPro:IPR011028); contains InterPro domain Negative regulatory factor PREG (InterPro:IPR012389) Range:  from: 18449064    to: 18450474    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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