Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <------ZmHOX2a(1)                                                                  --------->ANAC58                                                                  --------->ANAC58                                                            --------->SPL7      --------->At5g28300                                 ----------->HVH21     ----------->GT1                                     --------->LBD16 ----->LBD16                                             <------NtERF2 -----LBD16                                             --------->ANAC46 ----LBD16                                              <---------LBD16                 --------->ARR11(3) ->ARR14(2)                              ----------->GT1--------->LBD16                 <---------ARR11(3) --ARR14(2)                        ---------->DOF2     <---------LBD16          <----------ID1   gggaatgcagtaaatctctgtatcaattgcgatattggaaagagggtaagaagcatgcccgggacgataaggaacatcgatggagacgaagacattctca  18423700                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                        <-----------------AGL1                                                        ----------------->AGL1                                                        <---------LBD16                                                      <---------ARR14(2)                                     ----------->GT1  --------->ARR14(2)                         --------->LBD16          <---------LBD16 <--------P     --------->HSFB2a(2)                       <---------LBD16        <---------------AtSPL3     <---------AGP1                      ------>ZmHOX2a(1)   ---------->DOF2 --------->LBD16<---------ARR14(2)   -------                <---------ICU4  --------->ZAT18   --------->SPL7 <---------MYB52(1)         >>>>>>>>>GATA-1               <---------YAB1   <---------ZAT14 <---------SPL7<---------ANAC46   <---------HSFB2a(2)   gtcgtattcatcttgttatcattcctccggagagtgaaccagtgaaaagtcgtccggttccggttcgggtatgtagttctggtcgagaagcatagataaa  18423800                   <------ZmHOX2a(2)                  --------->ARR11(3)                  <---------ARR11(3)                                                   ----------->GT1                --------->ICU4                                                     <---------ARR14(2)              ---------->DOF2       <---------LBD16                        ----------->RAV1(1)            --------->REM1(2)    <---------GLK1(1)                         --------->MYB52(1)          --------->LBD16       ------->TEIL                            --------->ANAC55(1)         <---------ANAC58       --------->ARR14(2)            <------ZmHOX2a(1)    --------->ARR14(2)         <---------ANAC58  ----------->GT1                  --------->ANAC58      <------ZmHOX2a(1)         <---------ANAC55(1)    <---------ARR14(2)          --------->ANAC58  ------->GAMYB     ------>ZmHOX2a(1)<---------ANAC46                   --------->LBD16--------->ANAC55(2)     <----------DOF2------>ZmHOX2a(2) ------>NtERF2     --------->ANAC58<---------ANAC55(2)     ======================HOX2a_HOX2a--------->LBD16   --------->ANAC46--------->ANAC58     =====================HOX2a_HOX2a<---------DEAR3(1) --------->ANAC58--------->ANAC58 --->DOF2<---------ANAC46<---------ANAC46              <---------LBD16  --------->ANAC46     --------   gagagtcctttccgtgtaaagatcgcgtcttgtgaatctccggcgagcgaattagactccgcaaggacttggagacgcaacagaggattgggtaatatcg  18423900                                                                  <---------ATHB12                                                                --------->WOX13(1)                                                              <------NtERF2                                                             ------>NtERF2                                                             <-----------HVH21                                                            <---------bZIP60(1)                                                            <---------ANAC46                                                           --------->ATERF1(1)                                                           <------NtERF2                                                           --------->RAP2.3(1)                                                           --------->RRTF1(1)                                                          <---------RAP2.6(1)                                                          ------>NtERF2                                                          <---------RRTF1(1)                                                          <---------ATERF1(1)                                                          <---------DEAR4(2)             <<<<<<<<<MYB2                                                          <---------ORA47(2)           <---------MYB46(3)                                                          <---------RAP2.3(1)          <------MYB46(1)                                                          <---------ERF1               <------MYB83                                                         <---------RRTF1(3)           <---------AtMYB61                                                         <---------RAP2.3(3)         <--------P                                                         <---------RAP2.3(2)        <---------ANAC58                                                         --------->DEAR3(1)         <---------ANAC58                                                         <---------DEAR3(1)         <-------GAMYB                                                        <------NtERF2              --------->ATHB12                                                        --------->ATERF1(1)        <------MYB83                                                        <---------ABI4(1)          <---------DEAR3(2)                                                       <---------RRTF1(1)          <---------MYB46(3)                                                       ------>NtERF2               --------->MYB52(2)                                                       <---------ATERF1(1)         --------->MYB55(2)                                                       <---------RAP2.3(1)         <------MYB46(1)                                                       <---------ERF1             <---------MYB46(3)<                                                      <---------RRTF1(2)          <---------AtMYB61 <                                                      <---------DREB2C(2)         --------->MYB111(1)                                                      <---------DEAR3(1)        <-------GAMYB       -                                                      <---------RAP2.3(3)      --------->MYB111(2) <-                                                      <---------RRTF1(3)       <---------MYB46(3)  <-                                     --------->LBD16  <---------RAP2.6(2)      --------->MYB55(2)  --                                 <---------ALFIN1     <---------RAP2.3(2)      --------->MYB52(2)<---                                --------->ETT(2)     --------->RAP2.6(3)      <---------AtMYB61 <----                --------->ARR11(3)  <---------LBD16 --------->MYB52(1)        --------->ALFIN1 <-----                <---------ARR11(3) <---------LBD16 ----------->HVH21       <---------DEAR3(1)  <----- ->ARR11(3)   ----------->ARR10 --------->ZAT18    ----------->TGA1--------->YAB1<--------P   <------   ttttggtaccaaggctaagatgttcaatacgatgtccaccgggagtgagaacaatgacggcggcgtcaatgaagacgacggtggttggttggttttctgc  18424000         <------NtERF2        <---------RAP2.3(1)        ------>NtERF2       <---------DEAR3(1)    --------->MYB52(2)   <-------TEIL ---------DEAR3(2) ---------MYB46(3) -------->MYB55(2) --------AtMYB61 --------DEAR3(1) ------->ALFIN1                                                     --------->YAB1 ------ANAC46                                                       --------->AHL20(2) -----DEAR3(1)                         <------ZmHOX2a(1)           <---------ATHB12 ----ZAT14                          <------ZmHOX2a(1)            --------->WOX13(1) ----LBD16                       <------ZmHOX2a(1)         *TSS------------>CBF <----------DOF2 -----RAV1(1)              <----------DOF2         --------->MYB46(3)  <------------CBF        ------   ggtggttcgtcggcgttagacatcgagagctattaggaggaggagactagagaacaactgagtgaatcaatcaaattgagggctttagccaaaaaccaaa  18424100  <-------GAMYB                 ----------->GT1                   --------->LBD16                  <- --------->LBD16         <----------DOF2  ----------->GT1 <-----------------AGL1                 ---- ----------->GT1         <---------------AGL15       <---------ANAC58                           <---- ---->DOF2        <---------GLK1(2)   <-----------GT1<---------ANAC58                           <----   agccggttaaattcttctctgattctgctttaatcggttaaaaccggtttatatttcttgtcttgatcagggaaacacacagagttttagaataaggccc  18424200              <---------------------WRI1          <-----------HVH21          <---------MYB52(1)         --------->LBD16       <---------LBD16 <---------KAN4(2)         <---------TOE2(3) -----ZmHOX2a(1)  --------->GLK1(2)                                  --------->DAG2 ----->LBD16 ----------->GT1 <------ZmHOX2a(1)                     ---------->DOF2 -----LBD16 <---------MYB46(3)                             ----------->GT1                         -- -------RAV1(2)   ------->TEIL                         ---------->DOF2                         <-----   aggaataagcccggtgagtgaatctttctaaggaatcgattttaaaacaaggcccattaaagggtgaagaaaaggcccatgaaaatgcttaaaccccctt  18424300                                                                            --------->At4g35610                                                                            <---------At4g35610                   *TSS                                            --------->TOE2(3)                   <------ZmHOX2a(1)                               --------->TOE1(3)             <---------ZAT14                                       --------->YAB1             --------->ZAT14                                     --------->ARR14(2)         <-------TEIL                                            <---------ARR14(2)       <---------GLK1(2)                                         --------->GLK1(2)      <---------ZAT2                                             <-----------ARR10      --------->ZAT2                                            <---------ARR14(1)      <---------At4g35610                                       <---------CCA1(2)      --------->At4g35610           ---------->DOF2           <---------ANAC58     <---------TOE1(2)           <---------TOE2(3)            <---------ANAC58 -------->ARF1  <-----------RAV1(2)<------ZmHOX2a(1)>>>>>>>>>TBF1------->TEIL -----DOF2<---------ANAC46     --------->CCA1(2)<------ZmHOX2a(1)<---------ARR11(1)                <-   tgtctcccagcttcgtacacaggagagactgagataaggaaagaagaagaggaagaagaaaatggcgaatcttaactcagctattgattcagtgttttgg  18424400                                                                                        --------->At4g35610                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                               <-------MYC2                                                                               ------->MYC3        <-                                                                               <-------MYC3        --                                                                               ------->PIF5      ----                                    <---------ZAT2  <-----------HVH21          <-------PIF5    <-----     --------->HSFB2a(1)            --------->ZAT14--------->LBD16             ------->MYC2 ---------     <---------HSFB2a(1)       --------->ZAT18   <---------LBD16       --------->ANAC46--------->RAP2.6(2) -----ZmHOX2a(2)--------->TOE2(3)   --------->ZAT2--------->LBD16 <---------MYB52(1)--------->ANAC46   gatcagaacgtttcttcacctcaaacccttgaaggcactgctcgctctgttcccggtgagccatttcccttagacggagcacgagcaagccgctctcacc  18424500       --------->At4g35610        ------>ZmHOX2a(1)       <---------At4g35610   <----------DOF2     --------->MYB46(3)     <---------ANAC58                     <---------At4g35610 --------ARR14(2)           <---------ANAC58                     --------->At4g35610 ------->ARR14(2)    --------->HSFB2a(2)            <----------DOF2----------->HVH21 ----->LBD16         <---------HSFB2a(2)   <---------ICU4    ------>ZmHOX2a(1) ----LBD16      <---------At4g35610       <---------ATHB12 <---------At4g35610 -->HVH21       --------->At4g35610       --------->ICU4   ----------->RAV1(2)       <----------DOF2   ggattcaacagctctctctgcttcgcgaaggctttcctcttggaatcattccttctttggctcctgcttctgacaagagactcggctctttctctctcaa  18424600  Previous    Next  AGI:  At2g44630.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At2g44630 [Arabidopsis Thaliana] (GB:O80502); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71765.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043 Range:  from: 18422771    to: 18424059    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g44640.1    Description:  similar to PDE320 (PIGMENT DEFECTIVE 320) [Arabidopsis thaliana] (TAIR:AT3G06960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70456.1) Range:  from: 18424319    to: 18426472    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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