Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------SPL7                                                              <---------ANAC58   -------->HAHB4                                                              <---------ANAC58   --------->YAB1                                               <-----------RAV1(1)     ------->TEIL              <---       <---------ARR11(3)             ----------->RAV1(2)    ---------->ID1     --------->ICU4  ----- --ANAC58                             =====================RAV<---------ANAC46  <---------YAB1 ------ --ANAC58                           <-----------GT1          --------------->AtSPL3            ------ --ANAC46              <<<<<<<<<<<<<<<<<LFY<--------P        --------------->AtSPL8           -------   catcgtcgagataatacctagatttgaacaatggaaatttacctggtaagtgttgtcgaatttgtcgtacatgaatcgagtaatgatactggttttgccg  18420900                                                                                        ------>ZmHOX2a(2)                                                                                 --------->SPL1(1)                                                                                 --------->MYB52(1)                                                                                <---------SPL7                                                                                ----------->HVH21                                                                    --------->ARR11(3) --------->At4g35610       ------>ZmHOX2a(2)                                            <---------AGP1--------->SPL7      <---------GLK1(1)                                             <-----------ARR10  <------ZmHOX2a(2)     --------->ARR11(3)                                   <---------GLK1(1)    --------->DEAR3(1)     <---------ARR11(3)                                 <---------ICU4------>ZmHOX2a(2)<---------At4g35610  <---------WOX13(1)                            --------->LBD16     <---------ARR14(2)------->TEIL ---NtERF2 <---------HSFB2a(2)             ----------->HVH21        <---------ARR11(3)--------->GLK1(2) ->NtERF2  --------->HSFB2a(2)         --------->ZAT18  --------->ATHB12      <---------LBD16  <----- --->DEAR3(1)                     <---------ANAC58     --------->ICU4 <---------MYB59 --------->ARR14(2) ----->HVH21--------->ANAC46      <---------ANAC58 ------>NtERF2    --------->ARR14(2)<---------AGP1 -->DEAR3(2)--------->LBD16<---------YAB1 ------>NtERF2<---------YAB1<------ZmHOX2a(2)<---------ARR14(2)   acggattgatctcccagaaacaccagcttatacttagcgagtgccgagaccggagccatgatttctcaaggatctaactcgccggacggatctgagaaac  18421000                                                  <---------ARR11(3)                                                  <---------ARR14(2)             <---------At4g35610                  --------->ARR14(2)          <----------DOF2                         --------->ARR11(3)     ------>ZmHOX2a(2)                           <---------GLK1(1)    <------ZmHOX2a(2)                            --------->GLK1(1)   --------->ARR14(3)                     --------->LBD16   --------->ARR14(2)                   <---------LBD16<-----------HVH21   <---------ARR14(3)                  <---------At5g28300    --------->HSFB2a(2)   <---------ARR14(2)                  --------->MYB52(1)     <---------HSFB2a(2)         -----------   <---------ARR11(3)             <---------RVE1(1) ------>ZmHOX2a(2)    --------->ARR14(2)   --------->ARR11(3)  ---------->DOF2<-----------GT1 --------->ANAC46   <---------ARR14(2) ----HSFC1(2)--------->At4g35610 <---------MYB52(1)<------ZmHOX2a(2)----------->GT1  <---------ZAT6 -   gtcgagatctcgctttgctgagaataaaagtttccgatatttaccggagagagatcccgtcgctctggaattgcaaatactgtattagtgagagtttgtt  18421100                                                 --------->AHL20(2)                  ----------->TBP                             <---------MYB59   <<<<<<<<<MYB98                     --------->AHL20(1)                            <-----------------AG <---------AHL20(2)               <---------AHL20(1)                            ----------------->AGL1                               --------->AHL20(2)                            <-----------------AGL1                        <-----------GT1                         ----------->HVH21   <---------YAB1            <---------------AtSPL8     <-- ->MYB.PH3(2)       ------>ZmHOX2a(1)       <---------TOE2(3)          ----------->GT1            --- ---------->GT1--------->KAN4(2)   --------->MYB59       *TSS     <---------TOE2(3)  <---------AHL20(2)   attcgtaaattgcagtttattcctcgagtgacccaattgggtcatttatgttaaattagaaactatttgagataagttacaaaatatataaaaacttaga  18421200                                                                                  <-----------HVH21                                                                                <-------PIF5                                                                                ------->PIF4                                                                                ------->MYC4                                                                                <-------PIF4                                                                                <-------MYC3                                                                                ------->MYC2                                                                                ------->PIF5                                                   <---------ARR14(2)           <-------MYC4                                            --------->TGA1a                     <-------MYC2                                            --------->O2                       <---------ANAC55(2)                                            <---------TGA1a                    ======================                                            --------->bZIP60(2)                --------->TGA1a                                            <---------O2                       <---------O2                                            --------->ANAC55(2)                --------->O2     -----                                            --------->ANAC55(1)                --------->ANAC55(2)                                            --------->ANAC58                   <---------TGA1a  -----             <-----------GT1                --------->ANAC58                  ------------>OsbHLH66        <------ZmHOX2a(1)                   --------->ANAC46                <------NtERF2   ---------      <---------TOE2(3)           --------->YAB1   --------->ARR14(2)      <-----------------PIF3(1)      <---------TOE1(3)         <-----------TBP   <------ZmHOX2a(1)        ----------------->PIF3(1) -------At4g35610            <------NtERF2  <---------ANAC55(2)           <---------RAP2.3(3)-------- ------>At4g35610           ----------->RAV1(1)  --------->ICU4--------->TOE2(3)------->MYC3<--------   agctgattaaggaatttactacattatgggcagcatttataagcccacgtaaggatttgggctagccttatagtagggggcacgtgtcatctcgtatgac  18421300              <---------DAG2            <---------------AGL15            --------------->AGL15           <-----------------AGL2           ----------------->AGL1           <-----------------AGL1     <---------YAB1                                                                  --------->CCA1(2) =========================bZIP_DOF                                                  <----------ID1 ---->At4g35610<----------DOF2                                          --------->ZAT2 ------>RAV1(2)<---------DAG2                                           <---------ZAT2 >SPL7     <-----------------AG                                     --------->HSFB2a(2)--------->ANAC58 --->HVH21 ---------->ID1                                           <---------HSFB2a(2)--------->ANAC58 -TOE1(2)<-----------GT1   *TSS                             --------->TOE2(3)   ---------->DOF2   ctgaactatttttgccccttttggctacttgactcttctgtgtctctctcatcaaatcaaatccctaattctcgagctcgaagaaagagacgaaaatggc  18421400                               <---------LBD16                             <---------ARR14(2)                                        <---------MYB52(1)                             --------->ARR14(2)                                    <------ZmHOX2a(2)                     <---------TGA1a                                              <---------ARR14(2)                     <---------O2                                               ----------->ARR10                     --------->O2                                              --------->SPL7                     <---------ANAC55(2)                                     <---------SPL7                     <---------At4g35610                                   <---------TOE1(2)                     --------->TGA1a                                      --------------------->WRI1                     ----------->RAV1(2)                                 <---------ANAC58                     --------->At4g35610                                 <---------ANAC46                     --------->ZAT2                                      <---------ANAC58                     <---------ZAT2            <------ZmHOX2a(1)    <---------ANAC58  --------->LBD16                 <-----------HVH21         --------->TOE1(2)        <---------ANAC58------>ZmHOX2a(2)                 <-----------TGA1          <XXXXXXXXXXXXXXXXXXXXMIR869.1--------->MYB52(2)                --------->ANAC46 --------->LBD16           <-----------------AGL3 --------->ARR14(2)   actgagaaatgcaattcttcgtcacctgagggttccggtgcaaaccctaggattgaatcagtctaaaattgggttccttggtacgatccggtcattttct  18421500                                                                                               ------                                                                                             --------                                --------->ETT(2)                                        <---------At4g35610                               <------NtERF2                                            --------->At4g35610                        --------->ZAT2                                                  --------->ZAT2                <---------At4g35610    <---------ZAT18                   --------->ARR14(2)  <-------                --------->At4g35610    --------->ZAT14                   <---------ARR14(2)  <-------           <---------YAB1    <---------ANAC46                     ---------->DOF2       <---------ZAT2       <---------ARR11(3)    <---------ETT(2)                   --------->LBD16       <---------WRKY12       --------->ARR11(3)  <-----------HVH21              --------->At4g35610       <-----------HVH21      --------->YAB1    <---------At4g35610              <-----------ARR10<------ZmHOX2a(2)  --------     <---------YAB1     --------->At4g35610              --------->ARR11(3)       <---------TOE2(3) <---------TOE1(2)     --------->GLK1(2)                 <---------ARR11(3)       <---------TOE1(3)   tcgcacgatgatcatcttagcagagaagctgtcgtcgatagagtactcgatgttgtcaagagcttccccaaagtcgatccctctaaggtcagctcgatct  18421600                                            --------->ATHB12  <---------AHL20(2)                        <---------ICU4 --------->AHL20(2)                        --------->ICU4  --------->YAB1                           < >ZmHOX2a(2)                 <----------DOF2--------->ATHB51 <---------YAB1                        <- ->ARR11(3)              <---------CCA1(2) <---------YAB1  <---------ICU4                         <-- --ARR11(3)          --------->ICU4      <---------ICU4    -------->HAHB4                      <----- --ARR14(2)       <---------YAB1        ------>ZmHOX2a(1) --------->ICU4                   ========== ->ARR14(2)     --------->YAB1         --------->TOE2(3)  <---------YAB1                   <------ZmHOX2a(1)   tcataaaatttggccaaatcgtgattcttatcttttgttttcctcattattgggaacaaaatgattattttgccttgaatatttgtcaatgtaggagctt  18421700        <---------ANAC55(2)        <---------ANAC58        <---------ANAC46        <---------ANAC58        --------->ANAC55(2) <--------P <---------WOX13(1)                      ------->TEIL -------GAMYB                            --------->ARR14(2)           ----------->GT1 --------MYB46(3)    <---------ZAT6      <---------ARR14(2)       <---------MYB46(3)     <---------ARR11(3) -------AtMYB61  ------>ZmHOX2a(2)      <---------CCA1(2)      <---------ZAT6   <---------TOE1(3) -----DOF2     --------->ARR11(3)   ------>MYB83          <----------DOF2       <---------TOE2(3) =======================HOX2a_HOX2a ------>MYB46(1) <-----------RAV1(1)  <---------AHL20(2)------>ZmHOX2a(2)   ttggttgatttcgtattgatctagtggaaatagagaccaaatgtatctgaaacgatgttgcattagtgttgttagtaaattgaaggttattgatctcaat  18421800  Previous    Next  AGI:  At2g44610.1    Description:  RAB6; GTP binding. similar to AtRABH1e (Arabidopsis Rab GTPase homolog H1e), GTP binding [Arabidopsis thaliana] (TAIR:AT5G10260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70462.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Rab6-related (InterPro:IPR015600); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 18418502    to: 18421157    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g44620.1    Description:  mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier. Identical to Acyl carrier protein, mitochondrial precursor [Arabidopsis Thaliana] (GB:P53665); similar to MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2), acyl carrier [Arabidopsis thaliana] (TAIR:AT1G65290.1); similar to unknown [Populus trichocarpa] (GB:ABK92816.1); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain D-alanyl carrier protein (InterPro:IPR003230); contains InterPro domain Acyl carrier protein-like (InterPro:IPR009081); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro Range:  from: 18421327    to: 18422379    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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