Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 ------>ZmHOX2a(2)                              <------ZmHOX2a(2)               ------>NtERF2                              --------->GLK1(1)        --------->HSFB2a(1)                             <---------AGP1            <----------TaMYB80                    <-------                             --------->ARR14(2)        <---------HSFB2a(1)                   <-------                             <---------ARR11(3)   --------->LBD16                            <-------                             <---------ARR14(2)  --------->TOE1(2)        --------------->AGL15                             ------->TEIL  --------->YAB1<-----------GT1  <---------------AGL15                             --------->ARR11(3)  <---------LBD16    --------->YAB1      --------->MYB52(1)                        --------->MYB52(1)<---------ATHB12   --------->LBD16        --------->ANAC58 -------->GT1       --------->AtLEC2    --------->WOX13(1)  --------->HSFB2a(2)     --------->ANAC58   ctgaaaaacacgattcccgtccatgaaaacggatctcaaaatcaatcaaaccctgggattttcccgactataatccctcaaaatagaagcaaacgtcgtg  18420800                                                               <---------SPL7                                                              <---------ANAC58   --------->YAB1                                                              <---------ANAC46   -------->HAHB4                                               <-----------RAV1(1)     ------->TEIL              <---       <---------ARR11(3)             =====================RAV<---------ANAC58  <---------YAB1  ----- --ANAC46                             ----------->RAV1(2)    --------------->AtSPL8            ------ --ANAC58                           <-----------GT1          --------------->AtSPL3            ------ --ANAC58              <<<<<<<<<<<<<<<<<LFY<--------P        ---------->ID1     --------->ICU4-------   catcgtcgagataatacctagatttgaacaatggaaatttacctggtaagtgttgtcgaatttgtcgtacatgaatcgagtaatgatactggttttgccg  18420900                                                                                        ------>ZmHOX2a(2)                                                                                 --------->MYB52(1)                                                                                 --------->SPL1(1)                                                                                <---------SPL7                                                                                ----------->HVH21                                                                    <---------AGP1--------->SPL7       ------>ZmHOX2a(2)                                            <-----------ARR10  --------->At4g35610      <---------GLK1(1)                                             --------->ARR11(3) <------ZmHOX2a(2)     <---------ARR11(3)                                   <---------GLK1(1)    --------->DEAR3(1)     --------->ARR11(3)                                 <---------ICU4<---------MYB59 --------->GLK1(2)  <---------WOX13(1)                            --------->LBD16     <---------ARR11(3)------->TEIL ---NtERF2 --------->HSFB2a(2)             ----------->HVH21        --------->ARR14(2)<---------AGP1 ->NtERF2  <---------HSFB2a(2)         --------->ZAT18  --------->ATHB12      <---------LBD16  <----- --->DEAR3(1)                     <---------ANAC58     <---------YAB1 ------>ZmHOX2a(2)<---------At4g35610 ----->HVH21--------->ANAC46      <---------ANAC58 ------>NtERF2    <---------ARR14(2)<---------ARR14(2) -->DEAR3(2)--------->LBD16<---------YAB1 ------>NtERF2--------->ICU4<------ZmHOX2a(2)--------->ARR14(2)   acggattgatctcccagaaacaccagcttatacttagcgagtgccgagaccggagccatgatttctcaaggatctaactcgccggacggatctgagaaac  18421000                                                  --------->ARR14(2)                                                  <---------ARR11(3)             --------->At4g35610                  --------->ARR11(3)          <----------DOF2                         <---------ARR14(2)     ------>ZmHOX2a(2)                           --------->GLK1(1)    <------ZmHOX2a(2)                            <---------GLK1(1)   --------->ARR14(2)                     --------->LBD16   <---------ARR11(3)                   <---------LBD16<-----------HVH21   <---------ARR14(2)                  <---------At5g28300    --------->HSFB2a(2)   --------->ARR14(3)                  --------->MYB52(1)     <---------HSFB2a(2)         -----------   <---------ARR14(3)             <---------RVE1(1) ------>ZmHOX2a(2)    --------->ARR14(2)   --------->ARR11(3)  ---------->DOF2<-----------GT1 --------->ANAC46   <---------ARR14(2) ----HSFC1(2)<---------At4g35610 <---------MYB52(1)<------ZmHOX2a(2)----------->GT1  <---------ZAT6 -   gtcgagatctcgctttgctgagaataaaagtttccgatatttaccggagagagatcccgtcgctctggaattgcaaatactgtattagtgagagtttgtt  18421100                                                 <---------AHL20(2)                  <---------AHL20(2)                             <---------MYB59   <<<<<<<<<MYB98                     --------->AHL20(1)                            ----------------->AGL1                                <---------AHL20(1)                            <-----------------AGL1                               --------->AHL20(2)                            <-----------------AG --------->AHL20(2)       <-----------GT1                         ----------->HVH21   <---------YAB1            ----------->GT1            --- ->MYB.PH3(2)       ------>ZmHOX2a(1)       <---------TOE2(3)          <---------------AtSPL8     <-- ---------->GT1--------->KAN4(2)   --------->MYB59       *TSS     <---------TOE2(3)  ----------->TBP   attcgtaaattgcagtttattcctcgagtgacccaattgggtcatttatgttaaattagaaactatttgagataagttacaaaatatataaaaacttaga  18421200                                                                                  <-----------HVH21                                                                                <-------PIF4                                                                                <-------MYC2                                                                                ------->MYC3                                                                                <-------MYC3                                                                                ------->MYC2                                                                                <-------PIF5                                                                                ------->MYC4                                                   <---------ARR14(2)           <-------MYC4                                            <---------O2                        ------->PIF5                                            --------->bZIP60(2)                <---------ANAC55(2)                                            <---------ANAC55(2)                --------->TGA1a                                            --------->ANAC58                   ======================                                            --------->ANAC46                   --------->O2                                            --------->ANAC55(2)                <---------TGA1a  -----                                            --------->TGA1a                    --------->ANAC55(2)                                            --------->ANAC55(1)                <---------O2     -----             <-----------GT1                --------->O2                      ------------>OsbHLH66        <------ZmHOX2a(1)                   <---------TGA1a                 <------NtERF2   <--------      <---------TOE2(3)           --------->YAB1   --------->ARR14(2)      <-----------------PIF3(1)      <---------TOE1(3)         <-----------TBP   <------ZmHOX2a(1)        ----------------->PIF3(1) ------>At4g35610            <------NtERF2  --------->ANAC58              <---------RAP2.3(3)-------- -------At4g35610           ----------->RAV1(1)  --------->ICU4--------->TOE2(3)------->PIF4---------   agctgattaaggaatttactacattatgggcagcatttataagcccacgtaaggatttgggctagccttatagtagggggcacgtgtcatctcgtatgac  18421300              <---------DAG2            --------------->AGL15            <---------------AGL15           ----------------->AGL1           <-----------------AGL2           <-----------------AGL1     <---------YAB1                                                                  --------->CCA1(2) =========================bZIP_DOF                                                  <----------ID1 ---->At4g35610<---------DAG2                                           <---------ZAT2 ------>RAV1(2)<----------DOF2                                          --------->ZAT2 -TOE1(2)  <-----------------AG                                     <---------HSFB2a(2)--------->ANAC58 --->HVH21 ---------->ID1                                           --------->HSFB2a(2)--------->ANAC58 >SPL7   <-----------GT1   *TSS                             --------->TOE2(3)   ---------->DOF2   ctgaactatttttgccccttttggctacttgactcttctgtgtctctctcatcaaatcaaatccctaattctcgagctcgaagaaagagacgaaaatggc  18421400                               <---------LBD16                             <---------ARR14(2)                                        <---------MYB52(1)                             --------->ARR14(2)                                    <------ZmHOX2a(2)                     <---------ANAC55(2)                                          --------->ARR14(2)                     <---------O2                                               ----------->ARR10                     --------->O2                                              --------->SPL7                     <---------At4g35610                                     <---------SPL7                     --------->At4g35610                                   <---------TOE1(2)                     --------->TGA1a                                      --------------------->WRI1                     <---------ZAT2                                      <---------ANAC58                     ----------->RAV1(2)                                 <---------ANAC46                     <---------TGA1a                                     <---------ANAC58                     --------->ZAT2            <------ZmHOX2a(1)    <---------ANAC58  --------->LBD16                 <-----------HVH21         <XXXXXXXXXXXXXXXXXXXXMIR869.1--------->MYB52(2)                 <-----------TGA1          --------->TOE1(2)        <---------ANAC58------>ZmHOX2a(2)                --------->ANAC46 --------->LBD16           <-----------------AGL3 <---------ARR14(2)   actgagaaatgcaattcttcgtcacctgagggttccggtgcaaaccctaggattgaatcagtctaaaattgggttccttggtacgatccggtcattttct  18421500                                                                                               ------                                                                                             --------                                --------->ETT(2)                                        <---------At4g35610                               <------NtERF2                                            --------->At4g35610                        --------->ZAT2                                                  <---------ZAT2                <---------At4g35610    --------->ZAT14                   --------->ARR14(2)  <-------                --------->At4g35610    <---------ZAT18                   <---------ARR14(2)  --------           <---------YAB1    <---------ETT(2)                     ---------->DOF2       --------->ZAT2       <---------ARR11(3)    <---------ANAC46                   --------->LBD16       <---------WRKY12       --------->ARR11(3)  <-----------HVH21              --------->At4g35610       <-----------HVH21      --------->YAB1    --------->At4g35610              --------->ARR11(3)       <---------TOE1(3)     <---------YAB1     <---------At4g35610              <---------ARR11(3)       <---------TOE2(3) <---------TOE1(2)     --------->GLK1(2)                 <-----------ARR10<------ZmHOX2a(2)  <-------   tcgcacgatgatcatcttagcagagaagctgtcgtcgatagagtactcgatgttgtcaagagcttccccaaagtcgatccctctaaggtcagctcgatct  18421600                                            --------->ATHB51  <---------AHL20(2)                        --------->ATHB12 --------->AHL20(2)                        <---------YAB1    <---------YAB1                         < >ZmHOX2a(2)                 <----------DOF2<---------ICU4 -------->HAHB4                          <- ->ARR11(3)              <---------CCA1(2) --------->ICU4  <---------ICU4                         <-- --ARR11(3)          --------->ICU4      <---------ICU4    --------->YAB1                      <----- ->ARR14(2)       <---------YAB1        ------>ZmHOX2a(1) --------->ICU4                   <------ZmHOX2a(1) --ARR14(2)     --------->YAB1         --------->TOE2(3)  <---------YAB1                   ==========   tcataaaatttggccaaatcgtgattcttatcttttgttttcctcattattgggaacaaaatgattattttgccttgaatatttgtcaatgtaggagctt  18421700  Previous    Next  AGI:  At2g44610.1    Description:  RAB6; GTP binding. similar to AtRABH1e (Arabidopsis Rab GTPase homolog H1e), GTP binding [Arabidopsis thaliana] (TAIR:AT5G10260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70462.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Rab6-related (InterPro:IPR015600); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 18418502    to: 18421157    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g44620.1    Description:  mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier. Identical to Acyl carrier protein, mitochondrial precursor [Arabidopsis Thaliana] (GB:P53665); similar to MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2), acyl carrier [Arabidopsis thaliana] (TAIR:AT1G65290.1); similar to unknown [Populus trichocarpa] (GB:ABK92816.1); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain D-alanyl carrier protein (InterPro:IPR003230); contains InterPro domain Acyl carrier protein-like (InterPro:IPR009081); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro Range:  from: 18421327    to: 18422379    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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