Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ARR11(3)                                    <------NtERF2                        --------->AHL20(1)                  --------------->AtSPL8                        <---------AHL20(2)                  --------------->AtSPL3                        <---------AHL20(1)    ----------->TGA1              <---------DEAR3(1)             --------->MYB52(1)               ----------->HVH21            <------NtERF2        <---------AHL20(2)                  <---------At4g35610           <-----------HVH21        --     --------->TOE2(3)<---------TOE2(3)     --------->At4g35610          --------->ANAC46          <- --YAB1--------->AHL20(2)          ---------->DOF2 ---------->DOF2   ------>ZmHOX2a(1)   <----------DOF2   aaacaaatattaattcaacggattaatattttgtctaaaaagtttgagatgacgaaagagaagcagtactcctacgcgtcggagtcgattcctttggtga  18405100                                                                ========================HOX2a_HOX2a                                                               =========================HOX2a_HOX2a                                                               <---------GLK1(1)                                                       <---------DEAR3(1)                                                      --------->ATERF1(1)                                                      --------->DEAR3(2)                                                    <---------PCF2                                                    <---------PCF5  --------->ZAT2                                                    --------->TCP15(1)                                                    <---------ARR14(2)                                                    --------->TCP20 <---------ZAT2                                                    --------->ARR14(2)                                                   ----------->HVH21--------->At4g35610                                                   <------NtERF2------>ZmHOX2a(2)                                                   <---------SPL7   <---------At4g35610                                                   --------->ATERF1(1)                                                  <---------ATERF1(1)--------->AGP1                                                <------NtERF2  <------ZmHOX2a(2)                                         --------->GLK1(1)    --------->ARR11(3)              <------NtERF2              <---------GLK1(1) --------->LBD16   ---------->DOF2             ------>NtERF2              <---------ARR14(2) ------>NtERF2 <---------ZAT14             --------->LBD16            --------->ARR14(2)<---------ANAC46--------->ANAC46            <---------LBD16    <-------PIF4    ------>NtERF2  --------->ARR14(2)           <---------LBD16     ------->PIF4    --------->LBD16<---------ARR11(3)         --------->ANAC58      --------->ZAT18--------->ANAC46<---------ARR14(2)         --------->ANAC46    --------->ZAT18  <---------LBD16 <-----------ARR10       <-------MYC3         --------->ANAC58    <---------ZAT18 <---------LBD16<------NtERF2--------->ZAT14      <---------ATHB12   --------->DAG2===============================HOX2a_HOX2a<------ZmHOX2a(1)    --------->WOX13(1)  ---------->DOF2<------ZmHOX2a(1) <---------LBD16 <---------REM1(2)------->TEIL ------->ARR11(3) <------ZmHOX2a(1)    ================================HOX2a_HOX2a    ------->MYC3--- --------ARR11(3)----------->GT1  <----------CDC5 ------>NtERF2--------->GLK1(1) ====================   acatctcaatcacgccgggaggaataaaaagcgcgcgcagaggatttcccggcgggaccggcgggatctcagctctacacaaaggacacatggacttctt  18405200          <------ZmHOX2a(2)      --------->ANAC46      --------->ANAC58      --------->ANAC58     <---------LBD16    ------->GAMYB      <---------bZIP60(2)    =============================MYC_MYB                     <----------DOF2   <---------MYB55(2)  <---------TGA1a                      <---------ICU4   --------->MYB46(3)  --------->TGA1a               --------->LBD16  ------>MYB83         =================================================bZIP_DOF  -------->P           <---------ANAC46              ------>NtERF2                  <---------HSFB2a(2)  ===============================MYC_MYB            --------->ANAC46          <----------DOF2  ------>MYB46(1)      --------->O2              --------->ARR14(2)      <-----------HVH21   -------- ------>HSFB2a(2)      <---------O2              <---------ARR14(2)     --------->ANAC46    --------- ================HOX2a_HOX2a                  <---------At4g35610<-----------GT1    --------->HSFB2a(2)   ctccaaccacggatcaatgcaatcgacgtggaaacagtgactgcatgctgctatccgcctcatcttttctccctccgtcgcattttcgagacaaatcgta  18405300                                                                              --------->ANAC58                                  <-----------GT1                             --------->ANAC46                            <---------AtMYB61                          --------->DOF5.7(2)                          <---------MYB46(3)                    <---------------AtSPL3                         <---------DEAR3(1)           <---------WOX13(1) <---------DOF5.7(2)                        <---------ZAT2             --------->ICU4      --------->At5g28300                        --------->At4g35610     <---------DEAR3(1)  ------->TEIL                  <--                        --------->ZAT2        ------>NtERF2 --------->At5g28300------>NtERF2---------                        <---------At4g35610   --------->LBD16   <---------------AtSPL8--------->RAP2.6(3)                     <---------LBD16<-----------GT1<---------YAB1 <---------SPL7     --------->MYB52(1)           ------->TEIL <------------------------ANAC81  ------->TEIL ----------->GT1--------->ARR14(2) --->GT1<---------YAB1<---------DEAR3(1)     <---------DEAR3(1)<------------------SPL14     --------- ------>AtSPL3       ------>ZmHOX2a(1)      <---------LBD16<---------ANAC46   --------->ANAC58<------   caatacggtgatgaatgtttttcctcggctgtggtttttctccatctccggcgatgatggaccgtgaatgtacggtaacgacgccaagaacggctcgcga  18405400         <---------ARR14(2)         --------->GLK1(2)         <---------ARR11(1)         ------->TEIL                                       <---------ARR14(2)    --------->ANAC58                                        --------->ARR14(2)    --------->ANAC58                                        <---------GLK1(2)   --------->TOE1(2)                <---------RAP2.6(2)  <---------ANAC46 ----ZmHOX2a(1)                    --------->RAP2.6(3) --------->MYB52(1)                           - >ANAC58 --------->ARR14(2)    --------->ZAT14      <---------ICU4                                 <- >ANAC58<---------ARR14(1)     <---------ZAT14      --------->YAB1   <---------ATHB12              -- ---ANAC46           --------->CCA1(2)   <---------ZAT14<-----------------AG            --------->YAB1   ggaaacaagcgaatctatagaagagacggagagtgaagacggctacagagacgataatgacggattcggcaatgaactgagagagttgaatcacagtttc  18405500                                                                                >>>>>>>>>GT-1                                                                             ----------->GT1                       --------->GLK1(2)                                  <---------At4g35610                   --------->YAB1                                         <---------ZAT2          <---------HSFB2a(2)                                             --------->ZAT2          --------->HSFB2a(2)      --------->HSFB2a(2)  <---------ICU4   --------->GLK1(2)        <---------HSFB2a(2)   <---------AHL20(2)    --------->ICU4       ------->TEIL ------>GAMYB     --------->AHL20(2)                <---------YAB1  --------->MYB52(1) --------MYB52(2) <---------AHL20(2)       --------->ATHB12       <---------MYB52(2) ------->MYB46(3)--------->AHL20(2)<---------HSFB2a(2) <---------YAB1<---------TOE2(3)   aacaaacattctcgagaaaattaataatctattttatcgagaaaatgtttggagattattatggcagaactaacgaagctggttaatatttgtttgtagt  18405600                                                                                          <---------AHL20(2)                                                                                          --------->AHL20(2)                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                    <---------YAB1                                                                                  --------->YAB1    <                                   <---------ALFIN1                              <---------YAB1    <-                                  --------->ZAT18                            --------->TOE1(3)     <-                         ---------->DOF2                                     --------->TOE2(3)     <-               <---------TOE2(3)--------->PCF2  ------------>CBF             <---------DAG2   <------         --------->AHL20(1)   <---------ATERF1(1)  <------------CBF       <-----------GT1--------->AHL20(2)   ttggaaacacatatattaacatatactaagagcgaccccactggtttagaaccaattggttcttaattttgaattttaaccttattataaattaaaatgt  18405700      --------------->AGL15 ----------->GT1         ----------->GT1      <---------------AGL15--------->DAG2           <---------MYB46(3) ----------DOF2           ---------->DOF2      ------------>CBF --------ANAC58   ----------->GT1          <-----------GT1 --------ANAC46  --------->DAG2         <---------ICU4         <------------CBF --------ANAC58 ---------->DOF2        --------->ICU4         --------->ATHB12                     -- -----RAV1(1)<---------TOE2(3)   <-----------GT1   <---------ATHB12                         <--------   tgcttttactaagttaagaaaagttagaaaaagtttaactaatttttactccaatggttaagaactattggtttcttaaaaaacaacattcaaattatgt  18405800                                                                                                    <                                                                                                    -                                                                                                    -                                                                                               <-----                                                                                               <-----                                  --------->ANAC46                                         --------->At4g35610                           --------->AHL20(2)                                       <---------CCA1(2)                           --------->YAB1                                      <---------ARR11(3)   <                      <---------MYB59                                     <XXXXXXXXXXXXXXXXXXXXMIR852 <----------DOF2     --------->ANAC46<---------ALFIN1              --------->ARR11(3)      <---------At4g35610 ---->ZmHOX2a(1)<-----------GT1 --------->ANAC46            <---------TOE2(3)  --------->ARR11(3)   - -ICU4    <----------DOF2 <---------ATHB12    <----------DOF2      <---------ARR11(3)  --------->TOE2(3)   cctctttttattcttttttttctacccaattaaaacacaacacctatacttttcttagttttaagaaaacatcttagttaagatgtttatcttagctaag  18405900             <---------AHL20(1)             --------->AHL20(2)             <---------AHL20(2)    <------MYB46(1)    <------MYB83 --------->AHL20(2)                                   <------MYB83    <---------MYB46(3)                                                <------MYB46(1) <-------GAMYB   <---------AHL20(2)                                  --------->ALFIN1 -----------RAV1(1)      <---------DAG2                             <--------P -------->MYB111(2)      <----------DOF2                            --------->ALFIN1 -------->MYB55(2) <-----------GT1                            <-------TEIL<--------P ----TOE2(3)<---------AHL20(2)                               --------->CCA1(2) ----TOE1(3)--------->AHL20(2)<---------CCA1(2)       --------->At4g35610<-------GAMYB             <- ---------MYB46(3)<---------AHL20(2)       <---------STY1(2) xxxxxxxxxxxxxxxx>smallRNA(s)       <---- -------->MYB52(2)--------->AHL20(2)  --------->ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(s)           -----   gtttgttggttttattaaatttaatcacttttatatctaagaactagctaagaattagctaagatacaaggttggggttgctctaagagcatcttcattt  18406000  Previous    Next  AGI:  At2g44581.1    Description:  protein binding / zinc ion binding. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G44578.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83231.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 18405072    to: 18405509    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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