Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->MYB46(3)                                                    ----------->RAV1(1)                                                  --------->At4g35610                                                 --------->ANAC46                        <---------ARR14(2)                                          --------->YAB1                                 --------->ARR14(2)                                          -------->HAHB4                                 ------->TEIL                                         <---------ATHB12                             <--------------                                         <---------YAB1                            --------->GLK1(2)                                        <---------TOE2(3)                         <---------GLK1(2)                                       --------->YAB1 --------->REM1(1)      <-----------GT1                           --------->ANAC46     --------->YAB1          --------->LBD16 <---------CCA1(2)        <---------AtLEC2   <---------ALFIN1 <---------YAB1             --------->RAP2.6(2)        ---  ------>ZmHOX2a(1)       <---------ZAT14--------->ICU4               <---------LBD16<---------------   cttcctgttttcatgtctggtcttcttctacaccgtgtctctaatgataatcagcaacaactcgtagaagaagccggattaacaaattctgtatctggtg  18388700                           --------->ALFIN1                         --------->ALFIN1                        <-------MYC3                        ------->MYC3                       <---------ANAC58      <---------ANAC46                       <---------ANAC58      <---------ANAC58                       <---------ANAC55(1)   <---------ANAC58     --------->ARR14(2)                       =====================MYC_MYB              <---------MYB52(1)                       <---------TGA1a      <------NtERF2   <---------ALFIN1                       <---------ANAC46    ------>NtERF2   --------->ZAT14                       --------->O2     --------->LBD16 <---------At4g35610                       --------->TGA1a<---------LBD16   --------->At4g35610     --------->ZAT2                       <---------O2 --------->AtMYB61   <---------ZAT2          --------->At4g35610                  --------->ANAC58  ------->GAMYB       --------->ZAT2<----------DOF2------>ZmHOX2a(1) -AGL15           --------->ANAC58 --------->MYB46(3)  <-----------RAV1(1)      <---------ZAT2 -------->GT1   =================bZIP_DOF<---------MYB52(1)<---------ZAT14      <---------At4g35610 --AGL2         ---------->DOF2  <---------ALFIN1    <---------At4g35610   ------>ZmHOX2a(1)   aagtcaaaactcagaggcgaaagaaacgtgtggctcaacctccggtggcttatgcctctgctgcaccgtttcctttcctcccagctccttccttctactc  18388800                                                                                                -----                                                                                              <------             --------->ANAC46                                                            -------->HAHB4             --------->ANAC58                                                            <---------ICU4             --------->ANAC58                               ---------->DOF2              --------->YAB1           ---------->DOF2                            --------->GLK1(2)                 --------->ICU4         <----------DOF2<---------AHL20(2)            <---------ARR11(3)                <---------ATHB51        --------->TOE2(3)                            --------->RVE1(1)               >>>>>>>>>GT-1        --------->TOE1(3)                          --------->AHL20(2)         --------->ATHB12<------  --------->YAB1 --------->ANAC58           --------->AHL20(2)  --------->ARR11(3)<---------MYB46(3) <---------YAB1  --------->ANAC58           <---------AHL20(2)  <---------ARR11(3)----------->GT1   tccatgataacctttaagcaagctattgaatttttggaaacagaaattaaaaaaaaaatctgaaaagttcttaagtttaatctttggttaataatgaagt  18388900                                        --------->ATHB51                                       <---------YAB1   --------->ANAC58            --------->At4g35610   --------->ANAC58      <-----------GT1<---------ICU4 ---->ALFIN1           <---------AHL20(2)        <---------AHL20(2)                     <---------DAG2 ---ANAC46          ------->TEIL   <---------ALFIN1                               <-------TEIL------- ---bZIP60(2)    --------->ANAC55(2) --------->ANAC46                  <---------ATHB12 <----------DOF2   ggagaacgcatacaagtttatgtattttttctcatctccacataattgtattttttctctaagtatgtttcaaatgatacaaaatacatactttatcaat  18389000                                      <------MYB46(1)                                      <------MYB83                                     --------->MYB59                                  <-----------HVH21                                 --------->ALFIN1                               --------->O2                               <---------ANAC58                               --------->ANAC55(2)                               <---------ANAC58                          <---------HSFB2a(2)                               <---------ANAC46                     <------MYB46(1)                               <---------O2                         <------MYB83                               <---------TGA1a                  ------->TEIL                               <---------bZIP60(2)              <---------ARR14(2)               ----                               <---------ANAC55(1)              --------->ARR14(2)        --------->MYB52(1)                          ===============bZIP_DOF          <-----------GT1        <---------GLK1(1)                          <----------DOF2                  --------->MYB52(1)     --------->GLK1(1) -->WOX13(1)    ------->TEIL----------->HVH21       <---------TOE2(3)    --------->HSFB2a(2)    <----   tatctgatcaaattgatgaatttttgagctttgacgtgttaggtctatctaataaacgtagtaacgaatttggttttggaaatgaaatccgataaccgat  18389100                                                                ----------->GT1                                                             <---------GLK1(1)                                                             --------->GLK1(1)                                                            <---------ARR14(2)                                                          --------->LBD16                                                         ----------------->AGL1                                                         <---------ANAC46                                                        <------NtERF2                                                        --------->At4g35610                                                        <---------At4g35610                                                      <---------DEAR3(1)                                                     <---------At4g35610                                 ---------->DOF2     <---------ZAT2                              <-------GAMYB          --------->At4g35610                             ----------->GT1         --------->ATERF1(1)                     ------>NtERF2                             <------MYB83           <---------RAP2.3(1)                     >>>>>>>>>AtERF-3       <---------ZAT6        <------MYB46(1)        <---------ATERF1(1)                   <---------ZAT2       ----------->GT1       <---------MYB46(3)     ------>NtERF2                         --------->ZAT2   <---------ZAT14          <---------AtMYB61      <---------DEAR3(1)                <----------DOF2  <---------REM1(1)        <--------P           ----------->HVH21----------->GT1  <------ZmHOX2a(1)  <---------ANAC46      --------->LBD16       *TSS--------->RAP2.6(3)      --------->ATHB12 >>>>>>>>>AtERF-4 ----->YAB1           <---------LBD16--------->ARR11(3) <---------LBD16   <---------YAB1  <---------At4g35610 -----ATHB12        <-----------GT1  <---------ARR11(3)<---------ERF1   --------->YAB1    --------->At4g35610   gatggtgtagagttaaacgattaaaccgggttggttaaaggtctcgagtctcgacggctgcggaaatcggaaaatcacgattgaggactttgagctgcca  18389200                                                                      --------->LBD16                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                    <---------ATHB12 <---------RAP2.6(3)         --------->HSFC1(2)            ----------->GT1    <----------DOF2                   <---------HSFB2a(1)           <---------TOE2(3)------>NtERF2                  ---------->DOF2                <----------        <----------CDC5    <---------RAP2.6(2)  ---------->DOF2  <---------HSFC1(2)  ------>ZmHOX2a(1)   cgaagatggcgatgaggttgaaatcaatggcgactttgccgaaattgattcaaagtatgagaaaagaagttccgaagcattctaatcctgttttgccctc  18389300                                        --------->YAB1                               --------->WOX13(1)            <---------GLK1(2)                             =============================HOX2a_HOX2a                      --------->YAB1  <---------WOX13(1)    --------->ZAT2                     <---------YAB1<---------YAB1           <---------ZAT2             ---------->ID1  <------ZmHOX2a(2)              --------->At4g35610 <---------ICU4         <----------DOF2    --------->AGP1         --------->LBD16             <---------ATHB12 -GT1    <---------DAG2    --------->At4g35610     ------>ZmHOX2a(1)      --------->YAB1   <---------   tctgagacgagctttttccctctatgatcagatcaatctcattgacaatgttcctgaagaccagcttcgcttccaagagtaatcaattccaagctttctc  18389400                                                                 <---------TOE2(3)                                                                 <---------TOE1(3)                                                            --------->YAB1                                                            <---------ICU4                                        <---------LBD16     --------->ATHB12                        <                               ------>MYB46(1)             --------->ICU4                           -                           <---------At5g28300         <---------YAB1                           -----            <---------MYB52(1) ------>MYB83           <---------TOE2(3)                       <------           <-------GAMYB  <-----------GT1           <---------AHL20(2)                  --------->AHL20(2) -DOF2    <---------MYB46(3)--------->DEAR3(2)     --------->AHL20(2)               ----------->GT1<-   tattgtttttcgtcgttgattttgttttttaccgactgtgtttctgggtttgatttaatgaatgattagggtttttggaattggaaatgtataaatatgt  18389500         <---------GLK1(2)      <---------WOX13(1)    --------->ATHB12  <---------WOX13(1)                    --------->CCA1(2)                      <---------ANAC58 -----  <--------P                          --------->YAB1                           <---------ANAC58 <---- ----------------------->TaNAC69(2)   -------->HAHB4                          --------->At4g35610 <-------GAMYB                       <---------YAB1                --------->ARR14(2)           ----- ---------MYB46(3)                  <---------TOE2(3)              <---------ARR14(2)          <----- -------->MYB55(2)                <---------AHL20(2)    <---------AtLEC2      <---------At4g35610 ---->ALFIN1                     --------->AHL20(2)  --------->At5g28300 <---------TOE2(3) <---------ANAC46 -----RAV1(1)                  <---------ARR14(2) <---------At5g28300   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------AtMYB61        <----------DOF2--------->ARR11(1)    ----------->GT1<--------P  <-----------RAV1(1)   ggtggttgattgattctcttcacttactttgcagatttaatgatacgagtttcactgtgaatggagtcaaatacgaaggtagcttactctgtgttgggaa  18389600  Previous    Next  AGI:  At2g44520.1    Description:  COX10 (CYTOCHROME C OXIDASE 10); prenyltransferase. similar to unnamed protein product [Vitis vinifera] (GB:CAO70443.1); contains InterPro domain Protoheme IX farnesyltransferase; (InterPro:IPR006369); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537); contains InterPro domain Protoheme IX farnesyltransferase, mitochondria (InterPro:IPR016315) Range:  from: 18386640    to: 18389018    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g44525.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70445.1); contains InterPro domain Protein of unknown function DUF498 (InterPro:IPR007523) Range:  from: 18389146    to: 18390589    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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