Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <-------MYC2                ------->MYC2             <---------------AGL15                <-------MYC3             --------------->AGL15                <-------MYC4             ============================================================                ------->MYC3             <---------DAG2                                       <------        --------->ARR14(2)    <---------AHL20(2)                                      <---------ANAC58     <---------TOE1(3)   --------->ICU4  <----------DOF2                              <---------ANAC58     <---------TOE2(3)<---------YAB1 <---------ZAT18                                  <-------GAMYB -->TOE2(3) <---------ZAT18  <---------AHL20(2)                                      <---------MYB46(3) --GT1  <---------ARR14(2)   --------->AHL20(2)                                     <---------AtMYB61   attttgtaaggttctgcacatgttatacttattaattagtctactttttcaggcattgggattatttgttttagtctaaatcggttttggttgcataata  18323000                                                           ------>NtERF2                                                           --------->LBD16                                                          <---------ANAC46                                                          <---------RAP2.6(2)                                                         <---------LBD16                                            --------->ARR14(2)                                            <---------ARR14(2)                                            --------->ARR11(1)                                            <---------GLK1(2)                                         --------->HSFB2a(2)                                         <---------HSFB2a(2)<---------At4g35610                                         <---------------AGL15                                         --------------->AGL15                                        <-----------------AG<---------ZAT2                                        <-----------------AGL1                                        <-----------------AGL3  <---------ANAC46                                        ----------------->AGL2  <---------ANAC58                                        <-----------------AGL2  <---------ANAC58                  <------ZmHOX2a(1) <----------DOF2  <---------HSFB2a(1)          --------->ICU4 ---- ========================================================MADS_MADS   ---------->DOF2        --------- ---AHL20(2)  ---------->DOF2 ----------->RAV1(2)    --------->HSFB2a(1)--------->At4g35610<---------YAB1   ttggatgaaaacattgtaaaggacaatttcaaacctgacttttctagatttggaaacgttccggctgcttgaaaagctcacataaatattagtatgattt  18323100                                                                                                -----                                                                                                <----                                                                                                -----                    <---------YAB1                                    --------->MYB46(3)  --------->MYB52(1)                  <---------ICU4                             <---------ICU4              --------->ANAC46                 --------->ICU4              ---------->DOF2--------->ICU4               <---------ALFIN1                 <---------YAB1          <---------TOE2(3)  <---------YAB1             --------->AtMYB61               --------->YAB1            --------->DAG2   --------->YAB1               <---------ALFIN1           <---------AHL20(2)     --------->LBD16        --------->ICU4                ------->GAMYB          --------->AHL20(2)      --------->At5g28300 <---------AHL20(2)              --------->MYB46(3)          <---------AHL20(2)     --------->TOE2(3)   --------->AHL20(2)             <-----------GT1-- ----->TOE2(3)--------->ICU4     <---------ANAC46    <---------AHL20(2)         XXXXXXXXXXXXXXXXXXXX>MIR161.1 >ATHB12--------->YAB1           ----------->GT1----------->GT1<---------YAB1--------->LBD16    <----   cttaaaccaaaaataaatgatgattatcaacaataccgtaaataaggcaaaggaaataaatgatgattatcaacaattgccgaaaataaccacaccggta  18323200                                             ----------->GT1                                     --------->ANAC58                                     --------->ANAC58                                              -- ---->ZAT14                 --------->LBD16 <---------TOE2(3)                        --------->HSFB2a(2) -----ZAT14               <---------LBD16 ---------->DOF2                 <------MYB46(1)     ------- ---->SPL7             ---------->DOF2    --------->MYB52(1)              <------MYB83 ---------->DOF2 ------->ANAC46    --------->YAB1    --------->ANAC46        --------->MYB52(1)      <---------HSFB2a(2) ---TEIL          <-------TEIL   --------->YAB1         ------------>CBF --------->MYB59      <------   caccgaaattgtttttgagattcataaaaccggaataatacgcctaaaggttattttctccaataccggtttagtttggtttgccttctcaaagtactcg  18323300                                                                                              -------                                                                                              -------                                                                                              -------                                                                                           --------->DEAR3(1)                                                                                        --------->ANAC58                                                                                        --------->ANAC58      <------------CBF      --------->At4g35610                                  --------->ANAC46----    --------->ICU4       ----------->RAV1(2)                 <----------DOF2--------------->AtSPL8  < --------->GT1         <-----------GT1                --------->At4g35610   <---------------AtSPL3<-- -->HSFB2a(2)      --------->YAB1                     *TSS  <---------DAG2  <---------------AtSPL8<-- ---HSFB2a(2)   ----------->GT1                <-----------HVH21      <---------WOX13(1)--------->ANAC46   aaggtcaaaattggaatttagtaataaacctgctccagctatatacaaatgtcatttgctcacctttcgccgattgattttgtacatcacacgcagacgc  18323400                                                      --------->HSFB2a(2)                                                      <---------HSFB2a(2)                                               ---------->DOF2                                              <---------MYB52(1)                                             --------->LBD16                                            <---------ANAC46                                           <---------LBD16                                         ------>ZmHOX2a(2) -->ANAC58                             <---------ARR11(3)        <---------MYB52(1) -->ANAC58                          <---------HSFB2a(2)   ------->TEIL -->ANAC46                         <-----------GT1 --------->ARR11(3) --->TEIL <---------AHL20(2)     <-----------GT1  <---------At4g35610 ----------DOF2          <---------DAG2--------->ARR14(2) <---------ARR11(1) -------ZAT2             <----------DOF2<---------GLK1(1)<---------CCA1(2) -------At4g35610 --------->MYB46(3)--------->HSFB2a(2)  <---------GLK1(2)               <---------ZAT6   agcttttagtatttttttcaacaatcgcttttttttttctcgatctccgtgaagctctcgaatctctggtatgtttcttcgcttcttcatagtgtttctc  18323500                                                                       --------->LBD16    <---------ARR11(1)                                                                       ----------->GT1    ------->TEIL                                                                      <---------DEAR3(1) <---------GLK1(2)                             <---------ARR14(2)                 --------->ARR14(2)       <---------ARR14(1)                             --------->ARR14(2)                 <---------ARR14(2)       <---------CCA1(2)                 <---------ICU4                            --------->At4g35610   <---------At4g35610                 --------->ATHB51                     <---------HSFB2a(2)        --------->At4g35610              --------->HSFB2a(2)                     --------->HSFC1(1)--------->At5g28300              --------->TOE2(3)            <-----------GT1--------->GLK1(2)      --------->LBD16              --------->YAB1 <-----------ARR10        --------->HSFB2a(2)   <---------GLK1(1)      <---------AtMYB61      --------->GLK1(2)       <---------LBD16 <---------LBD16   ------>ZmHOX2a(2)   <----------DOF2    <---------LBD16 ------>ZmHOX2a(1)  <---------GLK1(2)  --------->GLK1(1)   atttccttttggtcttccataattttcggagaatctagtcctgtttttctcttcttctggaatctgaattcgccggtgaattccgctgatcgaatctctg  18323600                                                                  <---------WOX13(1)                                                                 <---------ANAC58                                                                 <---------ANAC58       ------>ZmHOX2a(2)                                                                --------->ATHB12   --------->ANAC58                                                          <---------ANAC58         --------->ANAC55(2)                                                          <---------ANAC58         --------->ANAC55(1)                                               --------------->AGL15               --------->ANAC46                   <---------DEAR3(1)          <---------YAB1  <---------YAB1      --------->ANAC58              <---------AHL20(2)               <---------------AGL15              <---------LBD16          <---------AHL20(2)                  <-----------------AGL2 <---------ANAC46  <------ZmHOX2a(2)          --------->AHL20(2)             --------->MYB52(2) <---------ZAT6       <-----------GT1          --------->ATHB51     <----------DOF2<-----------------AGL1 <---------ANAC58 --------->ARR14(2)          --------->ATHB12     <---------DAG2 <-----------------AGL3 <---------ANAC58 <---------ARR14(2)   agttttgttgaattatttgattcggcgataaaactttttttgtttgtttctgattttggtgagtgttgattgcttgagttttttcacggatcgatttgtt  18323700                                                                  --------->RAP2.6(3)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                      ----------->HVH21                          --------->MYB52(1)                     <-----------HVH21                        <---------ANAC46            --------->ARR14(2)                               <---------At4g35610            <---------ARR14(2)                               <------NtERF2          <---------MYB46(3)                              --------->LBD16                           -          ----------->ARR10                               <---------At4g35610                     <--       <---------ANAC58                                   --------->At4g35610                  <-----       <---------ANAC46   <---------TOE2(2)              --------->ANAC46             --------->ARR11(3)       <---------ANAC58   <---------TOE1(2)             <---------LBD16             <---------AtMYB61      <---------MYB46(3) <-----------RAV1(2)          <-----------GT1   <----------DOF2       <------NtERF2   ttgagaattgggtggatactgtctgtcacaggttttgagttttggagaatggtgtttttccgcagcgtatcggcctttactaggctgaggtctcgcgtcg  18323800                                                                                   --------->GLK1(2)                                                                                   <-----------ARR10                                                                                   ------->TEIL                                                                                   <---------ARR11(1)                                                                                ------>ZmHOX2a(2)                                                                               <---------------------WRI1                                                          --------->AtLEC2<------MYB46(1)                                                       <-------TEIL       <------MYB83                                                    <---------MYB46(3)  <---------WOX13(1) -------->ICU4                                ------>ZmHOX2a(2)       --------->ATHB12 -------TOE1(2)           <---------ANAC46  --------->ARR11(3)    --------->ATHB12<---------ARR14(1) ----ANAC46      <-----------GT1<---------MYB46(3) <---------TOE1(2)<---------WOX13(1)       <-------   taagtatttgaaaattttgtttccagttttgtgtttgttctcgtttgatctcgctggttcatgctaatcgattgattggtgatcgaatctatgtaagcag  18323900  Previous    Next  AGI:  At2g44350.1    Description:  ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase. Identical to Citrate synthase 4, mitochondrial precursor (CSY4) [Arabidopsis Thaliana] (GB:P20115;GB:O64869;GB:Q8LE36;GB:Q94EY6); similar to CSY5 (CITRATE SYNTHASE 5), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G60100.1); similar to Citrate synthase, mitochondrial precursor (GB:O80433); similar to mitochondrial citrate synthase precursor [Citrus junos] (GB:AAR88248.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67184.1); contains InterPro domain Citrate synthase-like, large alpha subdomain; (InterPro:IPR016142); contains InterPro domain Citrate synthase-like; (Inter Range:  from: 18323354    to: 18327865    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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