Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ================================HOX2a_HOX2a                                 =================================HOX2a_HOX2a                                 <------ZmHOX2a(1)                                 =================HOX2a_HOX2a           <---------At4g35610                            <---------HSFB2a(2)                <---------ANAC58                 --------->GLK1(2)                         ------>ZmHOX2a(2)                 <---------ARR14(2)                        <---------ANAC58                 --------->ARR14(2)                        <---------ANAC58          ---------->DOF2  =============HOX2a_HOX2a       <------ZmHOX2a(2)             ------>ZmHOX2a(2)        ================================HOX2a_HOX2a      --------->ARR14(3)           --------->ARR11(3)        <------ZmHOX2a(2)  ------>ZmHOX2a(2)             <---------ARR14(3)           <---------ARR11(3)       <-----------ARR10 --------->ARR14(2)              --------->ARR11(3)           <---------ARR14(2)    --------->ANAC55(2)  --------->ARR11(3)              <---------ARR11(3)           <---------AGP1    --------->ANAC58     <---------AGP1                  --------->ARR14(2)           --------->ARR14(2)    --------->ANAC58<---------ANAC46                     <---------ARR14(2)          <---------CCA1(2)    --------->ANAC55(1)  <---------ARR14(2)    --------->At4g35610 <---------YAB1<---------ANAC58    <---------ANAC55(2) <---------CCA1(2)  ------>ZmHOX2a(2)   <---------ANAC58  <---------ANAC58   <   ttcgatacggatcaaagcggttctgtggatctggaggagtttagatcggagatgaagaagatcgtgcttgcgattgctgatgggcttggatcttgtccga  18316700                             --------->ARR11(3)                             <---------AHL20(2)         --------->HSFB2a(1)                          <---------ICU4                <---------HSFB2a(1)                         <---------YAB1       --------->LBD16                       --------->YAB1        <---------ANAC46                      <---------YAB1        <---------LBD16     --------->ZAT2                   --------->ICU4        --------->ZAT2 --------->HSFC1(2)                   <---------YAB1        --------->At4g35610    <---------ZAT2                   <---                 --------->YAB1        --------->DAG2   <---------HSFC1(2)--------->HSFC1(2)     <---                --------->ICU4 <---------ANAC58         --------->At4g35610                  <-------           <---------At4g35610 <---------ANAC46 <---------ARR14(2)        <---------HSFC1(2)<--------      <---------ZAT6--------->YAB1    ---------->DOF2   <---------At4g35610            --------->YAB1 ---------YAB1  <---------YAB1 <---------ANAC58 --------->ARR14(2)     ---------->DOF2--------->ICU4   ttacgatggtgttagatgatgatgatgataatttcttgaaaaaagctgcggatttggaagcttccaagcttgagaaagcttcttcgtaatggtgatggat  18316800        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR11(3)      --------->ARR14(2)      <---------ARR14(2)      --------->ARR11(3) ---MYB83<----------DOF2                                                                          <-- ---MYB46(1)                  <-----------RAV1(1) <---------REM1(1)                   --------->ARR11(3) --MYB46(3)                <---------MYB52(1)    <---------TOE2(3)            <----------DOF2   <---- -WOX13(1)          <------------------------ANAC81                 --------->AHL20(2)<---------ARR11(3)   ggttttgggatctttttgaaactgttttcgttttgttgttgttcatgttttgatgtaagtgagagtttgaataaataaaactttgtgagatttttgtgct  18316900                                                          <---------LBD16                                                        <---------ARR14(2)                                         --------->ICU4 --------->ARR14(2)    <---------LBD16                    --------------->AGL15 -------AHL20(2)                       <---------------AGL15         <---------YAB1                 < ------DOF2         <----------DOF2   ----------------->AGL1--------->LBD16                 <--------   ttaatttggggaaaatgagagactttggagaaattgtgatgcaattttgggaaaactgaatcgggagatttatgaataagacttgggattgaagaaatcg  18317000                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               --------->GLK1(2)                                                               --------->CCA1(2)                                                              --------->ARR11(1) <---------GLK1(1)                                                             <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                      ----------->RAV1(2)       <xxxxxxxxxxxxxxxxxxxx                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <------NtERF2          <------NtERF2                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------HSFB2a(2)                      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->HSFB2a(2)                     ------>NtERF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------LBD16                          <xxxxxxxxxxxxxxxxsmallRNA(s)--------->GLK1(1) --     <---------YAB1                                <------NtERF2<-------TEIL--------->LBD16        --   --------->YAB1                                  --------->ATERF1(1)     <---------ANAC46     -----  <---------YAB1                                  <---------ATERF1(1)     <---------LBD16  ------->TEIL ---------At4g35610                     --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxx -GLK1(1) <-----------GT1          ----------->GT1<-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(s) -----   gaagatgataattttctggacgataatggaagtaatttggaaaaaaataagtcgtcgcctgagagattcgaactctcgcggggaaaccccatgtacttag  18317100              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              xxxxxxxxxxxxxxxx>smallRNA(s)             xxxxxxxxxxxxxxxx>smallRNA(s)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->MYB46(3)             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                <---------ALFIN1        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  --------->AtMYB61     --------->ANAC46  ---------->DOF2                                               <------NtERF2     --------->ANAC58  xxxxxxxxxxxxxxxx>smallRNA(se3)                                --------->ANAC58     --------->ANAC58 xxxxxxxxxxxxxxxx>smallRNA(le3)                                 --------->ANAC58   <---------ALFIN1 ------>NtERF2                                                   ------>NtERF2 <xxxxxxxxxxxxxxxxsmallRNA(s)     *TSS                                     ------>ZmHOX2a(1) xxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                             --------->LBD16 ------->ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(i)                         --------->ARR14(2) ------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------ARR14(2) ---->At4g35610  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <---------ARR11(3)          -- xsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                       --------->ARR11(3)   <-------- ---->ZAT2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->YAB1--------->TOE1(2) <--------   caggcacacgccttaaccactcggccaaagcgacttcttgctgtagttttgaaacttaactattagaattcaaaatcctgagatggcaccacaacttttt  18317200                                                                                                   <-                                                                                                   --  <---------bZIP60(1)                                                                              --  --------->bZIP60(1)                                        <---------AHL20(2)                    <- --------->HVH21                              <---------AHL20(2)        ----------->GT1           --- --DOF2                                       --------->AHL20(2)   <---------TOE2(3)     <---------YAB1 -DAG2  --------->ARR14(2)<---------AHL20(2) <---------YAB1 <---------AHL20(2)       --------->GLK1(1)   ggtgacatcaaatctacatattttgtatttttttttaaaactaagttattaattctctattttttatttaagaaatgtaaaactgagaattctaatagaa  18317300                          <---------ARR11(3)                                                <--------                          --------->GLK1(2)                                                 ---------           <---------AHL20(2)       <---------TOE2(3)                                       --------- --------AHL20(2)         --------->ARR11(3)                                   <-----------GT1  <---- ------->AHL20(2)        --------->CCA1(1)          <------ZmHOX2a(2)  <---------GLK1(2)<---------YAB1 ------->AHL20(1)        --------->RVE1(1)         <---------ARR11(3)  <---------ARR11(3)   <-------- --------AHL20(1)      --------->AHL20(2)   <-----------GT1            --------->ARR11(3)--------->YAB1 ------>AHL20(2) <---------TOE2(3) <-----------GT1 --------->ARR11(3)<---------TOE2(3)--------->YAB1   ataaattagtgatttttttaagaaaaaaaatctctattaacattttttaccaagatcagtttaccaatatttagatttttgtttctattcataataaatt  18317400                                                                                 ----------->GT1                                                                        --------->ARR14(2)                            --------->ZAT2                              <---------ARR14(2)    <------                            <---------ZAT2                             --------->At4g35610    ------- -AHL20(1)                  <---------At4g35610             --------->DAG2      --------->MYB59    <- >AHL20(2)             ----------->HVH21   <---------ARR14(2)     --------->GLK1(1)      <---------AHL20(2) >AHL20(1)  --------->AHL20(2)             --------->ARR14(2)     <---------GLK1(1)      --------->AHL20(2) ---TEIL    <---------AHL20(2)            XXXXXXXXXXXXXXXXXXXX>MIR2112-5P--------->CCA1(2)--------->AHL20(2) -AHL20(2) --------->YAB1   --------->At4g35610            ---------->DOF2<-------TEIL --------->YAB1   catgtttttggaattttaatcaagtttgacagctgcttattagcaaatactagtatcaatataaagggaaatcagatacattttggtaaaaataaataaa  18317500                                                                                              ------>NtERF2                                                                                             --------                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                          --------->ANAC58                                                                                          <---------ANAC55(2)                                              <---------AHL20(2)                          --------->ANAC55(2)                                              --------->AHL20(2)                         <-------TEIL                                             --------->AHL20(2)                         --------->ARR14(1)                                             <---------AHL20(1)                         --------->CCA1(2)          >>>>>>>>>>WRKY26                   <---------AHL20(2)                        --------->ARR14(2)          >>>>>>>>>>WRKY43                <---------ICU4                               --------->ARR11(1)          >>>>>>>>>>WRKY38               --------->ICU4                                <---------ARR14(2) ---AHL20(2)                             <---------YAB1                                <---------ARR11(3) -->AHL20(2)                           --------->YAB1            ---------->DOF2       --------->ARR11(3) --------ICU4                      --------->ZAT6 <---------AHL20(2)            <----------DOF2     <   atcaatacaatttgaccaatgctatatgaacaaaataacactcataatttttttaatctttgaatagaaaagaataccaaaactttgaagatacgcagcc  18317600  Previous    Next  AGI:  At2g44310.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G54530.1); similar to unknown [Populus trichocarpa] (GB:ABK94199.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 18316288    to: 18316902    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g44320.1    Description:  pre-tRNA. tRNA-Ser (anticodon: GCT) Range:  from: 18317053    to: 18317134    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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