Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ARR11(3)                                                --------->LBD16                                              <---------LBD16                                            <-----------GT1                                          <---------HSFB2a(1)                                          --------->HSFB2a(1)                <---------At4g35610                                          <---------HSFC1(2)                ----------->RAV1(1)                                          --------->HSFC1(2)   <------MYB46(1) ------->GAMYB  <---------ATHB12                      <---------GLK1(2)   <------ZmHOX2a(1)--------->At4g35610 ----->ANAC46                    ----------->RAV1(1) <---------ARR11(3)    <---------WRKY38(1) ------GT1     <---------WRKY18(1)  --------------------->WRI1 <------MYB83<---------WRKY12   cccaatccatagcttcttgacctcttgaaacatcacaacatagaattttccgcatgatattaggaaggtttagggagtcaacagagaaatataaaccaaa  18264700                                 <---------ARR14(2)                                 <---------GLK1(2)                                 --------->KAN4(2)                                 --------->ARR14(2)                                <----------TaMYB80                             <-------TEIL                           ------->MYC3                                    --------->ANAC58         ---------->DOF2   <-------MYC3                  --------->HSFB2a(2)       <------ZmHOX2a(2)   <-------MYC2                  <---------HSFB2a(2)      <---------ARR11(3)   ------->MYC2    <---------WOX13(1)              --------->ANAC58  <-------   attttagagatcaaagcatttggattccacatgcatattctcttaattgaagaatgtttctagcaaatgacaaaatcaagaaacagacttgagcttgacg  18264800               ------>ZmHOX2a(2)              <------ZmHOX2a(2)              --------->GLK1(1)             <-----------ARR10             ------->TEIL             --------->ARR11(3)             <---------ARR11(3)             --------->ARR14(2)             <---------ARR14(2)          --------->ANAC55(1)          --------->ANAC58          --------->ANAC55(2)          --------->ANAC58          --------->ANAC46          <---------ANAC55(2)         <---------LBD16        --------->MYB52(1)       ------->GAMYB                    --------->WOX13(1)                     <---------GLK1(2)       ----------->HVH21               --------->AHL20(2)                  <---------At4g35610      <---------MYB52(2)               <---------AHL20(2)                  --------->At4g35610     <---------At4g35610              <---------ATHB12               <---------ANAC46     --------->At4g35610            --------->WOX13(1)           ------>ZmHOX2a(1) --WRKY18(1) --------->AGP1    --------->ICU4           <-----------GT1<---------REM1(1)   aaatttcaactcacggatctacagtaatcgaaaatgatcaattaatcaacttaaattttgacaactcctcttcgtgtagcagaatttcatcatccaattt  18264900                                                                              <------ZmHOX2a(2)                                                                     ----------->RAV1(2)                                                                     <---------At4g35610                                                                =====================HOX2a_HOX2a      --------->GLK1(1)                                         =========================HOX2a_HOX2a      <---------GLK1(1)                            ---------->DOF2   --------->At4g35610       ------    <------ZmHOX2a(1)                            ====================================HOX2a_HOX2a  ---  --------->LBD16                                <------ZmHOX2a(1)<------ZmHOX2a(2)            ------ <-----------RAV1(2)         <---------HSFB2a(2) ========================HOX2a_HOX2a           <----- <---------LBD16             --------->HSFB2a(2)<----------ID1  <------ZmHOX2a(1) <------ZmHOX2a(2) -   agcccaggaattctcacaactccgaatttttctagcagagagaaaacaataggaaaagaaacagaaggatcacctgagagatcgatcaaatggtttcagc  18265000                                                  <---------ANAC58                                                  <---------ANAC58                                              <---------ANAC58                                            <---------ARR14(2)                                            ------->TEIL                                            --------->ARR14(2)                                            --------->ARR11(3)                                            <-----------ARR10                                           <---------ARR14(1)                                           <---------CCA1(2)                                         <---------ANAC58                                         <---------ANAC46                <---------ARR11(3)                                         <---------ANAC58                --------->ARR11(3)                                       <-----------HVH21                 --------->ARR14(2)                                    <---------ANAC58              <-----------HVH21            <-----                                    <---------ANAC55(2)      <---------SPL7                    ------ --------->MYB52(1)                 <---------ANAC58         <-----------HVH21                <------ --->ZAT2       --------->ANAC58    <---------ANAC55(1)     --------->ANAC46 --------->TOE2(3)======= ------>At4g35610            <------ZmHOX2a(2)<---------ANAC58    --------->LBD16    ================ --->At4g35610  --------->ANAC58    --------->ANAC55(2)============================================== ----At4g35610  --------->ANAC46    <---------ANAC46   <----------DOF2   <---------ARR14(2)   ------- ---------->HVH21          --------->GLK1(1)<---------ARR11(1)   <---------ANAC46    ---------->DOF2   agacgacggagatggaaaacgcaagggggagatcgatttcgtgtcgtatcttgctcgcttcaacgtcccgtcgaagatacctcagagcaaagacaaacgt  18265100                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--     <----------DOF2                                                                              <-- --MYC3                                                                                          <--- ->MYC3                             <---------ARR14(2)                                           <--- ---TGA1a                 ------------>CBF                               <---------MYB52(2)   ------- ===============bZIP_DOF --------->YAB1       <-----------GT1      <----------DOF2--------->GLK1(2) < ===bZIP_DOF             --------->TOE2(3)<----------DOF2 --------->ARR11(3)   ------------>CBF  ---- ===bZIP_DOF <---------ARR14(2)     --------->GLK1(2)     <---------ARR11(1)  --------->YAB1  <------ -->TGA1a  *TSS     ------------>CBF--------->ARR14(2)   <---------CCA1(2) <---------ICU4 -----------   gtgtttcctttggaggttttgggacaatctcaatggcgattcttctttttaccttcttcaaatctttcgctttcaactaatgacaatctatatcgtttaa  18265200       <-----------GT1     --------->AHL20(2) <---------AHL20(2) --------->AHL20(2) ------>YAB1 ----->HAHB4 ----->ATHB1 -------ICU4 ------>ATHB51 ------HAHB4                        --------->YAB1 -------AHL20(2)                    --------->ATHB12                  --------->AHL20(2) ------YAB1                         <---------ICU4            <---------ANAC46 ------ATHB51                      --------->ICU4             <---------ANAC58 -->AHL20(2)                     <---------ICU4               <---------ANAC58<-----------GT1 ---------YAB1      --------->YAB1 <---------YAB1             <---------ANAC55(1)         <---------- ----->ICU4   --------->ANAC46  --------->ICU4          --------->AHL20(2)<---------AHL20(2) ---AHL20(2)  --------->ANAC55(2)--------->YAB1         <---------AHL20(2)--------->AHL20(2) >GT1<---------AHL20(2)     <---------YAB1       <-----------GT1 ----------->GT1          <<<<<<<<<GT-1   ttattaattaaacttcacataatcagggttatgaattatgattacacttgtttaccatttttttacgtggaaaaaaataaatactctccgatttacctgt  18265300                                   --------->YAB1                             <-----------GT1                                   <---------AHL20(2)                         <---------YAB1                                       --------->AHL20(2)                        <---------AHL20(2)                                    <---------AHL20(1)                        --------->AHL20(2)                         --------->LBD16                        <---------AHL20(1)                 <---------DAG2     <---------AHL20(2)                        --------->AHL20(1)                 <----------DOF2------>ZmHOX2a(1)                      <---------YAB1                  <----------DOF2 --------->ARR14(2)             --------->TOE1(2)<---------TOE2(3)       <---------DAG2  <---------ARR14(2)  <---------LBD16    --------->AHL20(2)  --------->YAB1 <-----------GT1  <---------MYB59       ------ -GT1       <---------HSFB2a(1) <---------ICU4     <-----------GT1<-----------RAV1(2)         <------   ttacttcggataaaacgttcgaatattatattaacaatgacattgatagtattttactttacttttctccaggttcctaatttttttgttaacacatcca  18265400                                      <---------ANAC58                                      <---------ANAC46                                      <---------ANAC58                           <-----------RAV1(1)                       <---------AHL20(2)                                                           -                --------->ANAC46  <---------ZAT2<---------TOE2(3)                                ----             <---------ZAT14      <---------At4g35610           <---------ANAC46                 ----             --------->ZAT14      --------->At4g35610          --------->RAP2.6(3)              -----         <---------------AtSPL8  <-----------RAV1(1)       <---------ICU4                 -----------         --------------->AtSPL8 <---------RAP2.6(2)   <---------YAB1                     --------->ANAC46         --------->ZAT6--------->AHL20(2)    <---------YAB1--------->ATHB12   ----------->HVH21------ --->WOX13(1)<---------ZAT18   <---------At4g35610 <---------YAB1     ---------->DOF2    <----------ID1 -TEIL <-----------GT1--------->AHL20(2)   --------------->AGL15<---------RAP2.6(2)    <-----------GT1   tcaacatgttaacagtacacaaaattaaaatgttgctgctgcttgctattaatgtgattagtgattacggctaaaaggctatgacatataaacgacataa  18265500                                                             ----------->GT1      --------->YAB1                                        ------>ZmHOX2a(2)   --------->YAB1                                         --------->ARR14(2) ---------->RAV1(1)                        ----------->GT1<---------ARR14(2) ----->ANAC58                 --------->At4g35610  --------->AHL20(1) ----->ANAC58                 <---------ZAT2       --------->AHL20(2)             --------->ZAT6 ---->DAG2               <---------At4g35610       <---------AHL20(2)           <<<<<<<<<<<<<<<<<LFY >RAV1(1)                --------->At4g35610      --------->AHL20(2)         <---------ICU4       --- ---->DOF2     ----------->GT1<---------At4g35610 <---------AHL20(2)---------->DOF2        ----------   agcaacaatattagtttgggttaattaagctcagctaatttgggctagttaaaaaaattggatcggataaaaaagcccatattgacactgggccaacata  18265600  Previous    Next  AGI:  At2g44140.1    Description:  autophagy 4a (APG4a). Identical to Cysteine protease ATG4a (ATG4A) [Arabidopsis Thaliana] (GB:Q8S929;GB:O80583;GB:Q3EBG5); similar to autophagy 4b (APG4b) [Arabidopsis thaliana] (TAIR:AT3G59950.1); similar to Cysteine protease ATG4 (Autophagy-related protein 4) (GB:A2Q1V6); contains InterPro domain Peptidase C54 (InterPro:IPR005078) Range:  from: 18260573    to: 18265111    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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