Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------ZAT6                                                                            --------->ZAT18                                                                            --------->ZAT14                                                                            <---------ZAT14                                <---------WOX13(1)                         >>>>>>>>>>>>>>>>>LFY                                <--------P                         <---------YAB1    <-------GAMYB                               <-------GAMYB                    --------->ARR14(2)  --------->MYB52(2)                              <---------MYB46(3)       <---------YAB1     --------->ANAC46                   <---------ANAC46                <---------GLK1(2)    <-----------GT1<---------MYB46(3) ---------YAB1     <---------ANAC58             --------->YAB1  <---------ARR14(2)<---------MYB52(1) ----GT1           <---------ANAC58          --------->YAB1  <---------ANAC46<---------ALFIN1     ---   tcatgaaacaacatggacatttcttgaatttttggttgatattcaaataatcaaattcttatggagtatatgatttactccactgttagttgttcatttt  18260300                             <---------DAG2                             <----------DOF2                          <-----------GT1               <---------HSFB2a(2)               --------->HSFB2a(2)                              <---------ABI4(2)      ---------->DOF2 <----------DOF2                          --------->ANAC58    <---------YAB1  <---------HSFC1(2)           <---------GLK1(2)  --------->DEAR3(1) --------->ICU4--------->HSFC1(1)              --------->ICU4  --------->ANAC58 ------>ZmHOX2a(1)  --------->HSFC1(2)    <---------YAB1     ---------->DOF2                <-------- ------->ID1   <---------HSFC1(1)  ------>ZmHOX2a(1)     <-----------GT1                  <---------MYB46(3)   gtccttatgaaagtcttctagaagctttctacttttcctgttttatgaaaagattgttttaacaaaagcaccgtcttcatgaactaaaccagttgttata  18260400                               --------->GLK1(1)                               <---------GLK1(1)                             <------ZmHOX2a(1)                           <---------TOE2(3)                           <---------TOE1(3)                     ------>ZmHOX2a(1)                                  <------MYB83                     <---------------AGL15                              <------MYB46(1)                     --------------->AGL15                              <---------ANAC46                    --------->TOE2(3)                                  <---------MYB46(3)                    <-----------------AGL1                             --------->MYB46(2)                    <-----------------AG                         <---------ANAC58               <----                    <---------------AGL15                        <---------ANAC46          --------->ATHB12                    <-----------------AGL3           --------->ALFIN1<---------MYB52(1)    --------->YAB1                    --------------->AGL15           ------->MYC3 ----------------->AGL1   --------->ICU4                   ----------------->AGL1           <-------MYC3 <---------ANAC58         <---------YAB1 -YAB1           <-----------GT1        ---------->DOF2 --------->WRKY38(1)       ---------->DOF2   gattccatttcaaagttttattccttattaaggaaatcgcatcaaagtaacccatgtgttgactcttgcctgtttggtgagattgaaagggaatgattaa  18260500                                          --------->YAB1              <-------TEIL              ------->TEIL             --------->ARR14(1)         --------->GLK1(2)            --------->ARR14(2)          <---------ARR14(2)            <---------ARR14(2)          --------->ARR14(2)            --------->ARR11(1)          <---------ARR11(1)  --------->AHL20(1)                   <---------CCA1(2)  --------->AHL20(2)         ----------->RAV1(1)  <---------AHL20(1) <---------ANAC58--------->ANAC46  <---------AHL20(2) <---------ANAC46--------->ANAC58         <---------At4g35610                  <- --------->AHL20(2)  <---------ANAC58--------->ANAC58         --------->At4g35610                <--- -----TOE2(3)--------->CCA1(2)    <-------TEIL            --------->ANAC46                     <-----   gaaataaatttttagatacgtttgcgttttgcaacatacacgaatcttgatttttttcatacgctgctaaatcaagtttataggggtttttaaaaattta  18260600           <---------MYB52(1)          <----------DOF2         ----------->GT1      <---------MYB52(1)     <-----------HVH21    --------->DEAR3(1)   --------->HSFB2a(1)   <---------HSFC1(2)   --------->HSFC1(2)   <---------HSFB2a(1)   --------->MYB46(3)    --------->ANAC46   --------->DEAR3(2)    --------->ANAC58   <------------AtMYB77  --------->ANAC58             ---------->DOF2                    --------->ANAC58  ------->TEIL       --------->ANAC46                <---------AHL20(2)                  --------->ANAC58 --------->MYB52(1)  --------->ANAC58              <-----------TBP     <----------DOF2*TSS       ---- --------MYB52(2)    --------->ANAC58      <----------DOF2        ------>NtERF2      --------->ANAC58 --------GT1         ------->GAMYB       ------>ZmHOX2a(1)       <---------ALFIN1    --------->ANAC58 ----AHL20(2)       --------->MYB46(3)------>ZmHOX2a(1)        ------>NtERF2       --------->ZAT6<---   aacgaaccgtcgcgttatttcaaccgcaagcaaactcatcctcctctttccctatttaaaggctctgccacctctttgtagcttcacactcactcaaatt  18260700             <---------MYB52(1)            <-----------TGA1        <---------REM1(2)                   --------->ZAT14        <----------DOF2<---------ANAC58                  <---------ATHB12 ----->AHL20(2)        <---------ANAC58                --------->WOX13(1) ------AHL20(2)        <---------ANAC46         <----------DOF2         <---------ZAT14   taaatcgcaactttcgtcagtttttgtgtgttttcttctacacatagacactttgctcaatcaaacacactctctgttctgtttttctcaaacttgttta  18260800                                     --------->ARR14(2)                                     <---------ARR11(3)                                           <--                                     <---------GLK1(2)                                            <--                                     <---------ARR14(2)          --------->LBD16                 ----                             --------->DAG2          --------->ANAC55(2)                     <-------                           ---------->DOF2           <---------ANAC55(2)   ------>MYB46(1)   --------                       ---------->DOF2               --------->ANAC58      ------>MYB83    <---------ANAC58                --------->ALFIN1--------->ALFIN1 <-----------HVH21--------->LBD16          <---------ANAC58               --------->HSFC1(2)    --------->ARR11(3)         <---------LBD16            <---------ANAC46               <---------HSFC1(2)  ----------->ARR10 --------->ANAC58 <-----------GT1 <----------DOF2   agttcgatgactatggaagtgtcgaaaaagaaaggtggagattttcagcaatgtcacgaattgattcccggtttaccttccgaactagctttggagtgtt  18260900                                                                                                    <                                    ------>ZmHOX2a(2)                                              <-                                    <-------TEIL                                                   <-                                   <------ZmHOX2a(2)                                              ---                                  --------->AGP1                                                -----                                  --------->ARR11(3)      <---------ANAC58                      -----                                  <---------ARR14(2)      <---------ANAC58                      <----                                  <---------ARR11(3)     --------->At4g35610                    <----                                  --------->ARR14(2)   <------NtERF2                           ------                                 --------->GLK1(1)   <---------ANAC58                          <-----                                 <---------GLK1(1)   <---------REM1(1)                         ------         <---------ANAC58 ------>NtERF2<---------MYB52(1)<---------At4g35610                  <------NtERF2     <---------GLK1(1)    --------->LBD16            <---------ANAC46                        --------     --------->GLK1(1)   --------->ANAC58     <---------MYB52(1)                            <-------- ----MYB83               --------->ANAC58     <---------ARR14(2)                            <-------- ----MYB46(1)         --------->ARR14(2)     <---------RAP2.6(3)                         <---------DEAR3(1) ----->MYB59          <---------ARR14(2)    <---------ANAC58                           --------->ARR14(2) --ZAT6 --------------->AtSPL3  ----------->ARR10    <---------ANAC58       <----------DOF2<---------LBD16 ->ALFIN1<---------ANAC58--------->ANAC46   <---------ANAC58        ------>NtERF2      --------->MYB52(1)   tggtcagagttccgttccaattccaatccgccatgagatccgtttgccgttcttggcgtagcttactctccgactcttcttttatccaagaacggcggag  18261000                                              <------NtERF2                                             ------>NtERF2                                             --------->LBD16                                            --------->RRTF1(3)                                            --------->DEAR3(1)                                            <---------ATERF1(2)                                            --------->RAP2.6(2)                                            --------->RAP2.3(2)                                            --------->ATERF1(2)  <------NtERF2                             --------->RRTF1(2) --------->LBD16                            --------->RAP2.3(3) ----------->GT1                            --------->DREB2C(2) ---------RAP2.6(2)                        --------->RAP2.3(1) ------TEIL                                --------->RRTF1(1) --------LBD16                             --------->ORA47(2) ------>ALFIN1                             --------->ERF1 ---->GLK1(1)                            --------->ANAC46 ---->At4g35610                        <---------DOF5.7(2) -----At4g35610                       ----------->HVH21 -----GLK1(1)                        <---------MYB52(2) --->ARR14(2)                      ------->GAMYB ----ARR14(2)                     --------->MYB46(3)                                <---------MYB46(3) ----->ARR10           ------>NtERF2--------->At4g35610                             --------->ATHB12 ->LBD16            ------>ZmHOX2a(1)--------->DOF5.7(2)                         --------->YAB1 -DEAR3(1)          --------->At4g35610--------->MYB52(1)            --------->WRKY12       --------- -ANAC46            <---------At4g35610---------->DOF2               ----------->HVH21 ----------->HVH21   atgcggcaaaacagagcttctcctctgcctcgttcaaccgctaacgccgccaattccagcgtctaaatcggttgacgagacattaatggttgacgagaaa  18261100                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                   <------NtERF2                                                                                 <---------bZIP60(1)                                                                             ------->MYC3                                                                             <-------MYC3                                                                             <-------MYC2                                                                             ------->MYC2                                                                             ------->MYC4                                                                             <-------MYC4                                                                             <-------PIF5                                                                             ------->PIF5                                                                            --------->ANAC46                                        <----------DOF2                     --------->PIF3(3)                                      --------->LBD16                       <---------PIF3(3)                                  --------->ANAC58                          --------->O2                                  --------->ANAC46                          --------->TGA1a       ---                                  --------->ANAC58                          <---------TGA1a<---------ANAC58                                <---------ALFIN1                            <---------O2   <---------ANAC58                      --------->LBD16 ------>NtERF2                         >>>>>>>>>>HY5  <---------ANAC46                    --------->LBD16   <------NtERF2                     <----------------PIF3(2) ----                    <---------LBD16  --------->DEAR3(1)                 ----------------->PIF3(1)<---               <---------ALFIN1--------->ZAT14                    ------>NtERF2  --------->bZIP60(1)      <------ZmHOX2a(1) <----------DOF2 ==============================================bZIP_DOF<------ -->GT1    <-----------HVH21   <---------ZAT18                   <xxxxxxxxxxxxxxxxsmallRNA(s) -------   aaatcagaggatgagtcacacccgcgcgttttctgcacgccgcgttttggattgagcgtttacaacgctgcgatgtccacgtggcatcgcgttgcgtttc  18261200  Previous    Next  AGI:  At2g44140.1    Description:  autophagy 4a (APG4a). Identical to Cysteine protease ATG4a (ATG4A) [Arabidopsis Thaliana] (GB:Q8S929;GB:O80583;GB:Q3EBG5); similar to autophagy 4b (APG4b) [Arabidopsis thaliana] (TAIR:AT3G59950.1); similar to Cysteine protease ATG4 (Autophagy-related protein 4) (GB:A2Q1V6); contains InterPro domain Peptidase C54 (InterPro:IPR005078) Range:  from: 18260573    to: 18265111    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g44130.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At2g44130 [Arabidopsis Thaliana] (GB:O80582;GB:Q8L9E8); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59940.1); similar to unknown [Populus trichocarpa] (GB:ABK95444.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 18260686    to: 18262130    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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