Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->YAB1          --------->GLK1(1)          <---------GLK1(1)         --------->ARR14(2)                                                        --------->MYB46(3)         <---------GLK1(2)                                       --------->YAB1   ------>MYB83 ------ --------->MYB46(3)    <---------ATHB12                 --------->TOE2(3)         ------>MYB46(1)   ccatccactcagatttccaaaatcaataatccaaaaacttgttttgacattcgaaaaacctttgcaataacaatactgtataccaacaaatcccttcctc  18248000                                                      --------->ANAC46                                                    --------->AtMYB61                                                    <---------ALFIN1                                                   --------->MYB46(3)                                                  -------->P                                                 --------->WOX13(1)               --------------->AtSPL8            <-----------GT1              <---------ANAC58                 <---------ATHB12           <------ZmHOX2a(1)              <---------ANAC46                --------->ANAC58          --------->LBD16              <---------ANAC58                --------->ANAC58         <-----------RAV1(2)     --------->AtLEC2                        --------->WOX13(1)        <---------LBD16     --------->ANAC58                      <---------ZAT18            --------->TOE1(2)     --------->ANAC46      --------->YAB1  --------->LBD16 --------->ANAC58           ---------->DOF2     --------->ANAC58<---------MYB59      --------->ANAC46 --------->ANAC46      ----------->GT1 >ZmHOX2a(1)--------->ARR11(3)           <---------LBD16   --------->ANAC58    ---------->DOF2     --   cttgtacaagcaaatgtcttgtaccaaaatcaaaatccagacttgcgcaatcaaccactccaagaaatcaaacccaggaagaaaagaaaaaagagactag  18248100                                                                                        --------->TOE2(3)                                                                              --------->HSFC1(2)                                                                              <---------HSFB2a(1)                                                                              <---------HSFC1(2)                                                                              --------->HSFB2a(1)                 <---------ANAC46                                            --------->ANAC58       -               <---------LBD16                                               --------->ANAC58   <----            ---------->DOF2               --------->DAG2                  ------->GAMYB --------->TOE1(3)   <---------ANAC58                      ---------->DOF2                --------->At4g35610     -----   <---------ANAC58                   <----------ID1                   ----------->RAV1(1)      ----- ------->ARR11(3)----------->GT1--------->ANAC46                      <---------WRKY38(1)  --------->AHL20(2)   agatttcgttcagaaaatgcggtagaatcgattcacgagagcgaaaagggtctgaattttagcaaaacgtagtcaacagaagcatccaaaccttaaaata  18248200                                       --------->ZAT2                           --------->GLK1(2)                           --------->ARR14(2)         <---------GLK1(2) <---------ARR14(2)    ----------->GT1 -------->AHL20(2)     --------->YAB1  <---------ZAT14         --------->AtLEC2                   --- -----AHL20(2)        <---------ATHB12 --------->ZAT14     ------>NtERF2                ---------->DOF2 ---->AHL20(2)      --------->WOX13(1) <---------ZAT2 --------->ARR14(2)             >>>>>>>>>TBF1<-- ---->AHL20(1)   ------>ZmHOX2a(2)   <------NtERF2    <---------ARR14(2)      ---------->DOF2--------   aaataaaaacagaaactgatcccaatcagaatccatggccgagcacagcaattgtgaattcggccatgaaaattgcatcggaaagaagaagaaagatgtg  18248300                      --------->KAN4(2)                     <---------KAN4(1)                        <---------ARR11(3)                     --------->KAN4(1)                      ----------->ARR10                     --------->HSFC1(2)             ----------->RAV1(2)                     --------->HSFB2a(1)           --------->GLK1(2)                     <---------HSFB2a(1)           ------->TEIL    --------->ATHB12            ---------->DOF2     <------ZmHOX2a(1)  <---------ARR14(2)*TSS    --------->WRKY18(1) ------>ARR14(2)     <---------HSFC1(2)        --------->At4g35610<---------YAB1                   <- -------ARR14(2)    <---------KAN4(2)     <---------At4g35610 <---------GLK1(2)                 ----- --->GT1<-----------GT1 <-------TEIL      --------->At4g35610 --------->ARR11(3)     ------------>CBF   aatttgcaaattaccaaagaagaacattcgtagaggagatgggaagatgagcgaacctggacgagattttcattgagaggtcaagagaacaatgagagaa  18248400                             <------------CBF                            <--------ATHB1              <---------ANAC58                            -------->HAHB4              <---------ANAC58                            --------->ATHB51     --------->AHL20(1)                            <---------ICU4       --------->AHL20(2)                            --------->ATHB12     <---------AHL20(1)                         --------->YAB1 --------->AHL20(2)                ----------->GT1         --------->AHL20(1)  <---------ZAT18            <---------AHL20(2)          <---------AHL20(2)  --------->ZAT14            <---------YAB1 --------->ICU4        <---------AHL20(2)         <---------AHL20(2)<---------YAB1       --------->AHL20(2)         --------->AHL20(2)<---------ATHB51  <---------AHL20(2)     <---------AHL20(2)--------->AHL20(1)   --------->AHL20(2)    <---------AHL20(2) --------->AHL20(2)   <---------AHL20(2) --------AHL20(2)     --------->YAB1   --------->AHL20(2)<----------DOF2          --------->At4g35610 ---->GLK1(2) <------------CBF<---------WOX13(1)<---------AHL20(2) --------->ANAC46          <-------   tttttttttatttttttattgtaaaaataataattgacaaaattaattaaataaatttgctttgcactcacagaacagaacagaagatgacattttctct  18248500                                               --------->TOE2(3)                                   <-                                            <-----------GT1                                        <-                                         <---------AHL20(2)                              --------->ATHB12                                         <---------ICU4                                  <---------ICU4                                        <---------AHL20(2)            --------->HSFB2a(2)-------->ATHB1                                        --------->AHL20(2) --------->ANAC58              <--------HAHB4                                     <---------AHL20(2)    --------->ANAC46             --------->ICU4            <----------DOF2          --------->AHL20(2)    --------->ANAC58        <---------WOX13(1)  --------->YAB1                    <---------AHL20(2)   --------->MYB52(1)     <---------YAB1  <---- ----GT1  ---------->ID1      ----------->GT1  --------->TOE1(3)      <---------HSFB2a(2)--------->ATHB51   attttcatatttgtctttttggtttaatcgactggttatttatttattaccctaaaaaaaaacggaattgttttagaaaatgctaattgaattattagat  18248600                                                                             <---------ICU4                     ----------->GT1                                      --------->AHL20(2)                    <---------YAB1          --------->ANAC46              --------->YAB1                  --------->ATHB51        --------->ANAC58       <---------ANAC58        --------->At4g35610               --------->ANAC46     <-----------GT1                  -----       ----------->GT1                    --------->ANAC58<---------TOE2(3) --------->ICU4   <<<<<<<< --------ANAC58  <---------YAB1  <---------AHL20(2)     <XXXXXXXXXXXXXXXXXXXXMIR1887         <<<<<<<< --------ANAC58  --------->ICU4 --------->AHL20(2)   <----------DOF2----------->GT1    <-----------GT1 -----WOX13(1)  --------->TOE2(3)<---------ICU4   <-----------GT1<---------ANAC58<---------TOE2(3)   tgcttcagacagcaaaaacattattgtaaatctatttattacacacacaaaattacttttaagttttacttggtaataatatttagatttatccaaattt  18248700                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                           --------->DEAR3(1)                                                                                         ------>NtERF2                                                                                         --------->ABI4(1)                                                                                        --------->DEAR3(1)                                                                                       --------->MYB46(3)                                                                                      <---------At5g28300                                                                                    --------->MYB46(3)   ----------------->AGL1   --------->DAG2                                        --------->WOX13(1) ------------------------>ANAC81             --------->ANAC58                  --------->ANAC58 ------->CBF           <----------ID1        --------->ANAC58                  --------->ANAC58 <SARD1            ---------->DOF2     ---------->DOF2              *TSS       --------->ANAC46 <CBP60g  ----------->GT1  ---------->DOF2 ---------->DOF2          <-----------GT1 <---------ATHB12   caatagccaaataagaaaaaaaaaagagaaaaagcatataagaaagaaagcatctttggacttgtctgattttctctatagacgcaatcaccgccgattc  18248800                                                                     --------->ANAC58                                                                     --------->ANAC58                                <---------CCA1(2)                  <------ZmHOX2a(2)                                --------->GLK1(1)                 --------->ARR14(2) -->GLK1(2)               <-----------HVH21                       <---------ARR14(2) ->ARR14(2)              <---------DEAR3(2)      <----------DOF2 <------ZmHOX2a(1)   <---------------AtSPL8 --ARR14(2)          <---------ETT(2)     <-------TEIL    <----------DOF2       <-------------------- --GLK1(2)           --------->ETT(2)---------->DOF2    --------------->AGL15<---------TOE2(3)   tctctctctctctctcgagtctctcgacggtcgcatatcaaaagtccatttctttcttctctttggaggatcagcaactatggatgaagagtacgaagtc  18248900  Previous    Next  AGI:  At2g44090.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70678.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46384.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84657.1); contains InterPro domain Ankyrin (InterPro:IPR002110) Range:  from: 18245436    to: 18248369    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g44100.1    Description:  ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1). similar to RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT5G09550.1); similar to ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2), RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT3G59920.1); similar to GDP dissociation inhibitor [Medicago truncatula] (GB:CAF02075.1); similar to GDP-dissociation inhibitor [Lupinus albus] (GB:ABU98948.1); similar to GDP dissociation inhibitor [Brassica rapa] (GB:BAF81523.1); contains InterPro domain Rab GDI protein; (InterPro:IPR000806); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005) Range:  from: 18248768    to: 18253574    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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