Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <------NtERF2                                                             <---------ANAC58                                                             <---------ANAC58                                                             <---------bZIP60(1)                                                     --------->ANAC58                                                     --------->ANAC58                                                  <---------At4g35610           ----------->RAV1(2)                                                  <---------ZAT2  <---------MYB52(1)        <--------                                                  --------->At4g35610         --------->DEAR3(1)                                                  --------->ZAT2 <-------GAMYB--------->AtMYB61                ---------->DOF2               <-----------GT1--------->bZIP60(1)--------->At4g35610        <----------DOF2               ------>ZmHOX2a(1)      <---------ANAC46 <---------ALFIN1   gttcttatgtctttttggtaaagtctttgaatatttcttcctcttgtttttcagctcgaaatggcgtcgttgtttgagcaccacctgaaatagctcggct  18233000                    --------->ANAC55(2)            <------MYB83                    --------->ANAC58               <------MYB46(1)                        <---------GLK1(2)                    --------->ANAC55(1)            ----------->GT1                    ---------->DOF2                    --------->ANAC58        ----------------->AGL1                 --------->TOE2(3)                    <---------ANAC55(2)    ---------->ID1                        ------->TEIL     <---------MYB46(3)                    <-----------------AGL1            <---------------AtSPL3 --------->MYB52(2) <---------ANAC46       <-----------------AG              --------------->AtSPL8 -DEAR3(1) ------->TEIL               <-----------RAV1(1)                   <---------ANAC46---------   cgttcgatggatgaacatgatcacgtatgagaacctcttgatgttgtcccatttggttacaatccagtctctgaaattgtttgtacctcaaagattgtca  18233100                                                                                     <---------ICU4                                                                                     <--------ATHB1                                                                                     -------->HAHB4                                                                                    --------->ICU4                                                                                    <---------YAB1                                                                                    <---------ATHB51                                                                                  <---------ICU4                                                                                  --------->YAB1                                                                                 --------->ICU4                                          <---------At4g35610                    <---------YAB1                                          --------->HSFC1(2)                   --------->YAB1                           <---------AHL20(2)                                 <---------YAB1                           --------->AHL20(2)----------->RAV1(2)            --------->YAB1            <---------MYB46(3)    <----------DOF2                          <---------YAB1     <-----------GT1 <---------ARR11(3)   <---------HSFC1(2)              <---------TOE1(2) -->GT1   <---------MYB52(1) <-----------GT1--------->GLK1(2)             <---------TOE2(2)------>ZmHOX2a(1)   aaatgttttacccttggttacaaaatcatttaaacgcttttgtaagcttctggccttgttttttttttttgaatcgtatgataataataattcctccgaa  18233200                                                                                                    <                                                                                                   <-                                                <---------ARR11(3)                                 --                                                --------->AHL20(1)                                 <-                                                <---------AHL20(1)                                 --                     --------->YAB1             --------->ARR11(3)                                <--                    <---------ATHB12      ----------->GT1                                      ------             --------->ZAT14             ---------->ID1                                       <------             <---------ZAT14         <----------DOF2                      ------->TEIL  --------->ANAC58           --------------->AtSPL8------>ZmHOX2a(2)               <------NtERF2          --------->ANAC58        <----------DOF2        <---------ARR11(3)              --------->ALFIN1       ---------->DOF2 <---------LBD16 --------->ICU4--------->ARR11(3)           <---------TOE2(3)     --------->YAB1<----   ttttgggggtctttctgtactaatcaaaaatgtgatcttctttgttgtaatatcttgaaattgaggtgtcgaaatggatgtcaattttaaaagccaataa  18233300                                      <---------ANAC58                                --------->ICU4       --------->ANAC46 --------->ATERF1(1)         --------->YAB1 ------>ZmHOX2a(2)      <------NtERF2 <---------ANAC58 ----------->GT1 ------ZmHOX2a(2)      <---------RAP2.3(1)         <---------YAB1 --------ARR11(3)     <---------DEAR3(1)         --------->YAB1 ------->ARR11(3)     <---------DREB2C(2)     <------------CBF                   ------------>CBF --------ARR14(2)     <---------RAP2.3(3) ----------->HVH21                      --------->MYB46(3) ------->ARR14(2)     <---------DEAR4(1)--------->bZIP60(2)                  <------ZmHOX2a(2)      < ----ZmHOX2a(1)       --------->ETT(1)--------->ANAC55(2)              --------->MYB52(1)    *TSS   - --->YAB1             <---------At1g77200<-----------HVH21            <---------WRKY12   ------------ ---ATHB12           <---------ORA47(1) --------->ANAC46         --------->DAG2 -------->P  --------- -----TOE2(3)      <-----------RAV1(1)<---------ANAC55(2)       ---------->DOF2--------->WOX13(1) ---   ggatcttacacgacgaaaattttgtcggcgagcgaagattacgcgtcacattgataatagttaatataaagttcaacggatcaaccaattccacaatcta  18233400 <--------HAHB4 <---------ICU4 --------->YAB1                                                             --------->ARR14(2) ---------YAB1                                                              <---------ARR14(2) -------->ICU4                  <----------DOF2                      --------->ICU4 >CBF              --------->ZAT18                             --------->LBD16 >GLK1(2)          <---------ZAT18        ----------->HVH21   <-----------RAV1(2)                  -- ------>YAB1       --------->ZAT14  ---------->ID1  <-------TEIL----------->GT1             <--------   taatcattttgtgactcttggagcactctcttctctttgtctctgtgactcacattcatccaatccaggtaaaaatcaaatccactaagttttatttctc  18233500                        --------->YAB1                      ====================HOX2a_HOX2a                      ------>ZmHOX2a(1)                    ------>ZmHOX2a(2)                ----------->ARR10                --------->WRKY38(1)                      ----------->GT1              <-------GAMYB--------->ATHB12              <---------ANAC46             <---------ANAC58                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------ANAC46                          ----------->GT1                        -------             <---------ANAC58                      --------->DAG2                        ------>ZmHOX2a(2)         <---------ANAC58 --------->ICU4          --------->DAG2                       <---------ARR14(2) ------->ATHB12 --------->WRKY12   ------>ZmHOX2a(2)  --------->ALFIN1   <----------DOF2<------ZmHOX2a(2) ---GT1  <---------ANAC58 <---------YAB1         ---------->DOF2         <---------DAG2--------->ARR14(2)   ttcattgttgttcttgcgttgatccttcatgatttgatcggaatacatggaaaaaggtggtgtaattagatcgagctttttgtttctccgatctgtttga  18233600                                                                                    --------->ATHB12                                                                                    <---------ICU4                                                 <---------GLK1(1)                 <---------YAB1                                            ==========================HOX2a_HOX2a --------->ARR11(3)                                            ------>ZmHOX2a(2)             <-------MYC3                                           ===========================HOX2a_HOX2a <---------ARR11(3)                                           <------ZmHOX2a(2)              ------->MYC3                                          <---------AGP1                 <---------O2                                          <---------ARR14(2)             --------->TGA1a                                          --------->ARR14(2)   ------>ZmHOX2a(1) --------->YAB1                                         <---------CCA1(2) --------->ARR14(2)   <---------YAB1          ------>ZmHOX2a(2)         --------->KAN4(2)      <---------ARR14(2) --------->CCA1(2)        --------->ARR11(3)         <---------HSFC1(2)      ------->TEIL  <---------TGA1a      <-------TEIL                 --------->HSFC1(2)   --------->ANAC46 --------->ANAC55(2)  <---------TOE1(3)                <---------KAN4(1)    --------->ANAC58 --------->O2  --------->MYB59                  <---------HSFB2a(1)  --------->ANAC58 --------->ANAC46  <---------TOE2(3) --------->YAB1 --------->HSFB2a(1) --------->LBD16 <-----------GT1            <-- ---->HVH21   <---------ZAT6       --------->KAN4(1)   <---------TOE1(2) <---------ANAC55(2)      ---   catttaggttgatctagtgctatcatgtgtagatcgaacattcggatctgtatttcccacgaatcctcttgattcacgtgatatgatcattgtctcttag  18233700                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                           --------->ARR11(3)                                           <---------ARR11(3)                                --------->KAN4(2)                               --------->KAN4(1)                               <----------TaMYB80                               --------->GLK1(1)                               <---------GLK1(1)                               <---------KAN4(1)                               --------->HSFB2a(1)                               <---------HSFB2a(1)                              --------->ARR14(2)          --------->ARR11(3)                              ---------->TaMYB80          <---------ARR11(3)                              <---------KAN4(2)------>ZmHOX2a(1)                              <---------ARR11(3)         --------->GLK1(1)      <-------TEIL            <---------ARR14(2)        <---------ARR11(3) -------ZAT14                 --------->ARR11(3)      <---------YAB1   <---------ANAC58             < ------>ZAT14      <----------DOF2        <------ZmHOX2a(1)            <---------ANAC58<----------DOF2   tacagagatgcattgtatgttctttggtttgggatattccactaggatcctagttgatgatatctaatgtgatgcgagttctctatggtctttggtgaga  18233800                                                                                      <---------WOX13(1)                                                                                    --------->ATHB12                                                                                   <---------YAB1                                                                               --------->ZAT2                                                                               <---------At4g35610             <---------YAB1                        <----------DOF2             <---------ZAT2       <---------AtMYB61                  <---------YAB1             --------->MYB46(3)      ------->TEIL ----------DOF2                         ----------->GT1      <----------DOF2  ------>ZmHOX2a(1)   aactttgttttggtgattatagcctcttacaactactaaaaactgtgattacactttgtttgacttttacaaccattgtcctgctgtgattgatgaatct  18233900  Previous    Next  AGI:  At2g44050.1    Description:  COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase. Identical to 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor [Arabidopsis Thaliana] (GB:O80575); similar to unnamed protein product [Vitis vinifera] (GB:CAO46380.1); contains InterPro domain 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420); contains InterPro domain 6,7-dimethyl-8-ribityllumazine synthase; (InterPro:IPR002180) Range:  from: 18231327    to: 18233236    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g44060.1    Description:  late embryogenesis abundant family protein / LEA family protein. similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to unknown [Populus trichocarpa] (GB:ABK95225.1); contains InterPro domain Late embryogenesis abundant protein 2; (InterPro:IPR004864); contains InterPro domain Water Stress and Hypersensitive response (InterPro:IPR013990) Range:  from: 18233393    to: 18235227    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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