Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <------NtERF2                                                                               --------->ALFIN1                                                                               <---------DEAR3(1)                                                                              --------->ATERF1(1)                                                                              <------ZmHOX2a(1)                                                                            --------->ALFIN1                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                         <---------ANAC46                                                                         --------->ALFIN1                                                                         <---------DEAR3(1)                                                                        ------>NtERF2                                                                        <------NtERF2                                                                        --------->ATERF1(1)                                                                        <---------LBD16                                                                        <---------At4g35610                                                                       <---------ANAC46                                                                       <---------RAP2.3(1)      -----                                             <---------MYB46(3)        <---------ATERF1(1)      <----                                            --------->ALFIN1          <---------RAP2.3(2)  <---------ICU4                                            <---------AtMYB61         <---------DEAR3(1)   --------->YAB1 -------ANAC58                            <------MYB83               --------->SPL7     --------->YAB1 -------ANAC58                            <------MYB46(1)            <---------ABI4(1)<---------KAN4(2) -------ANAC46                           --------->ALFIN1           --------->ALFIN1<------NtERF2---- --->ALFIN1                              <---------MYB46(3)        <---------SPL7--------->ATERF1(1) ----RAP2.6(2)     --------->ARR14(2)    --------->MYB55(2)       <---------ANAC58  ----------->GT1 ----RAV1(1)       <---------ARR14(2)    --------->MYB111(2)      <---------ANAC46 --------->LBD16  < ->ALFIN1   <------ZmHOX2a(1)   ---------->DOF2    <-------TEIL   <---------ANAC58<---------ANAC46  <   gctggattggaacaggaccaagaactggagtattgaaaggaggctggtggtgatacatatgaagcataccgtgcggcggaggaggcgggataatcatcct  18214900                                                      <-------GAMYB                                                     <---------ANAC46                                                  <---------DEAR3(1)                                              --------->ZAT2                                              <---------ZAT2           --------->At4g35610                --------->At4g35610                                   <           <---------At4g35610                <---------At4g35610                                 <--      <---------TOE2(3)                       <---------GLK1(1)                                ------   --------->ALFIN1                           --------->GLK1(1)                                ======  <-------GAMYB                             <------ZmHOX2a(1)                                 <------ <---------MYB46(3)                      <-----------RAV1(2)                                 <------- ->ZmHOX2a(1)                            <---------LBD16  <---------ANAC46                   -------- -----LBD16<------NtERF2           --------->ANAC58------>NtERF2                             ------->TEIL ----->TOE1(1)                     <---------MYB52(2)<---------DEAR3(1)                      <------- ---------TOE1(2)               <------ZmHOX2a(1)<---------LBD16      =============================== ---------TOE2(2)<------ZmHOX2a(1) --------->ANAC58--------->LBD16    <------ZmHOX2a(1)   <---------WOX13(1)   cggaggttgaggcagcggaggagtagttcgaccaggaacgaactcaggagctccggcgttgagtcgacttaaggagagagacctcaagagtgatggatct  18215000         <---------At4g35610         --------->At4g35610    >>>>>>>>>TBF1 ------ZmHOX2a(1)                               =====================================HOX2a_HOX2a -------TOE2(3)                                 =============================HOX2a_HOX2a >ZmHOX2a(2)                                    <------ZmHOX2a(2)               --------->GLK1(2) ==============================HOX2a_HOX2a      ==========================HOX2a_HOX2a ---At4g35610                                   =======================HOX2a_HOX2a --ARR14(2)                      --------->ALFIN1               <------ZmHOX2a(1)          <-------GAMYB ->ARR14(2)             ===============================HOX2a_HOX2a            <------ZmHOX2a(1) --AGP1 --------->GLK1(2)      <---------ANAC46--------->ARR11(3)     <------ZmHOX2a(1)   <---------MYB46(3) =HOX2a_HOX2a           <------ZmHOX2a(1)      <---------ARR11(3)  <------ZmHOX2a(1)      --------->MYB52(2)   gaggaagaagaagctgaagtagtagaggaagtagagtgggagtgagatagatcatcggattgagtaggaggaggagtagaggaatctagggtttgttgat  18215100                                                                             --------->HSFB2a(1)                                                                             <---------HSFC1(2)                                                 ==============================bZIP_DOF                                                 ---------->DOF2             <---------HSFB2a(1)                                              --------->ANAC58               --------->HSFC1(2)                                            --------------->AGL15           <---------ARR14(2)                                           ----------------->AGL3           <---------KAN4(2)                                           ==========================================================                                       ========================================bZIP_DOF                                      --------->HSFC1(2)                    --------->ARR14(2)                                      --------->HSFB2a(1)              --------->ALFIN1                        <---------YAB1<---------HSFC1(2)             <---------O2                      <------ZmHOX2a(1)<----------DOF2               <---------TGA1a                    <---------TOE2(3) <---------HSFB2a(1)          --------->ZAT14              --------->ATHB12      <---------ARR11(3)      ===================bZIP_DOF             <---------YAB1         --------->ARR11(3)      <----------DOF2 --------->GLK1(2)          ----------->TGA1 <---------WOX13(1) --------->ANAC58     <---------ZAT14   cagccatggatgatgacgattgaaggatgatagatgaagaactttcccaagtaaagttagggcttttactgaagtgggaatcttcttcttacagattgag  18215200                        --------->LBD16                      <---------LBD16                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                 --------->GLK1(1)                 <---------GLK1(1)                <---------ARR11(3)                <-----------ARR10                  ---------->DOF2                <---------ARR14(3)        ---------->DOF2                --------->ARR11(3)      --------->AtMYB61                --------->ARR14(2)      <---------------AGL15         --------->MYB52(2)      *TSS---                <---------AGP1         ----------------->AGL2        <---------TOE1(2)   --------->HSFB2a(2)                <---------ARR14(2)     <-----------------AGL1       <---------MYB52(1)   <---------HSFB2a(2)               <---------CCA1(2)       ----------------->AGL1     <---------ANAC58  <---------At4g35610            <---------At4g35610        ----------------->AG   <----------DOF2      <---------ARR11(3) =======================================================MADS_MADS <---------ANAC58 --------->ARR11(3)   agatagatagagagagcagatctctccggagaaggggagagaccaaaagaggcaaaagtcgcttcttttcgtttgtttttggagagagcttctcgagtct  18215300                      <---------AHL20(2)                    <-----------TBP              <---------ANAC58                                                         <-----------GT1              <---------ANAC58             <---------YAB1                   <------MYB83              <---------ANAC46          ---------->ID1----------->GT1       <------MYB46(1)      <---------CCA1(2)             --------------------->WRI1             <---------AtMYB61 ------->DOF2---------->ID1        <----------DOF2  ---------->DOF2        --------->MYB59   caaaggtcgtctcttgtcgtatatttatagaatgtgacttttgttcttatcgacaaaagaaaaaaaacttcacttgtttggtcttaaaattacaaaattc  18215400                      <---------YAB1                   <---------YAB1                   --------->ICU4                 -------->ATHB1                                     --------->YAB1                 <---------ICU4                          <-----------HVH21                 --------->YAB1                       <-----------RAV1(2)                 --------->ATHB51                   <-----------HVH21                 <--------HAHB4                   <---------At4g35610                <---------ATHB51                  --------->At4g35610 --------->AHL20(2)                <---------ATHB12                  --------->ZAT2 ------>ZmHOX2a(1)     <---------ARR11(3)                      --------->DAG2     --------->TOE2(3)     --------->ARR11(3)                     ---------->DOF2 --------->KAN4(2) ---------->DOF2--------->ICU4           --------->YAB1 <---------At4g35610                     -----   cataaaagatgtttctcaattattattagtctcagagtatgaagcataaagcagcttcaggtcattcctaaaataaacagacagaagagtttcgcttccc  18215500                                                                                                =====                                                                                                -----                                                                                             ========                                      --------->GLK1(2)                                      <-------                                      <---------ARR14(2)                                --------->HSFC1(2)                                      ------->TEIL                                      <---------HSFC1(2)                                      <---------ARR11(1)                            --------->HSFB2a(2)                                      --------->ARR14(2)                            --------->ANAC46                                <------MYB46(1)                       <---------GLK1(1) --------->HSFB2a(1)                                <------MYB83              <---------HSFB2a(2)       <---------HSFB2a(2)                              <--------P                  --------->HSFB2a(2)      <---------LBD16<--               <---------ANAC58 <---------MYB46(3)   <---------ANAC58<---------ARR14(2)<---------ARR14(2) <-----------RAV1(1)        <-----------RAV1(1)<---------YAB1       <------ZmHOX2a(1)--------->LBD16< ---->ANAC46   <---------ANAC58<---------AtMYB61     <---------ANAC58--------->ARR14(2)--------->ARR14(2)   acaatgttggattcaatgcttctcttggacatgttggtcgaatctgtttctgatggcttcccagaatgcaggaactgcgatgttatccggaacttcttta  18215600                                      ------>ZmHOX2a(1)                                    ----------->RAV1(2)                                 --------->GLK1(1)                                 <---------GLK1(1)                                <---------ARR11(3)                                --------->ARR11(3)                             ------->MYC3                             <-------MYC3                            ==================================================bZIP_DOF                            <---------TGA1a      --------->MYB111(1)   <---------O2     <--------P             <---------ANAC55(2)     =================================MYC_MYB   ----------->GT1          --------->O2   <------MYB83             --------->TGA1a   <------MYB46(1)          --------->ANAC55(2) =====================================bZIP_DOF ----->DOF2                 --------->ANAC46 =====================================bZIP_DOF ---DOF2                    <---------ANAC46                                                        < -------TOE2(3)         <-----------HVH21                          ---------->DOF2         ---------- ------ZmHOX2a(1)  --------->ZAT18------>ZmHOX2a(2)------->TEIL --------->YAB1       --------->AHL20(2)   aaggatggtaagtagttcaagtctactatcacgtgatctcctgttccttcttgaatctgtggagattaataaagagacaatgtgtaagtaaatgagttat  18215700                       <---------YAB1                     <------ZmHOX2a(1)            <---------ANAC58                                                                 <-------            <---------ANAC46                                                         <---------At4g35610            <---------ANAC58                                                         <---------ZAT2        <---------ANAC58                                                            --------->MYB111(2)        <---------ANAC58               <-----------HVH21              <----------DOF2--------->At4g35610 ---------->DOF2 --------->ICU4        --------->TOE2(3)     <------ZmHOX2a(2)     <--------P-------- ---------AHL20(2) <---------TOE2(3)  --------->ANAC46      --------->ARR11(3)    <---------MYB52(1) ->GT1--------->ARR11(3)   <---------ICU4 ---------->DOF2  --------->At4g35610 <-----------RAV1(2)   atataaagggtcttgtgtgatgaggatgatacttacaactacgtcaaagccgaagattgtgagatcaagcttctttcttagccaggtagctgcttctgta  18215800  Previous    Next  AGI:  At2g43970.1    Description:  La domain-containing protein. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46369.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 18212311    to: 18215294    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43980.1    Description:  ATITPK4 (INOSITOL 1,3,4-TRISPHOSPHATE 5/6-KINASE 4); catalytic. Identical to Inositol-tetrakisphosphate 1-kinase 4 (ITPK4) [Arabidopsis Thaliana] (GB:O80568;GB:Q8VYL6); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08170.1); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08170.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46371.1); contains InterPro domain Inositol-tetrakisphosphate 1-kinase, uncharacterised-N-terminal (InterPro:IPR017418); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR00 Range:  from: 18215329    to: 18218720    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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