Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->YAB1                                                  --------->AHL20(2)                                                  <---------AHL20(2)                                                  <---------YAB1                                                 --------->AHL20(1)                                                 --------->AHL20(2)                                                --------->YAB1                                             <---------AHL20(2)                 --------->TOE2(3)          --------->AHL20(2)            ------->TEIL                <---------AHL20(1)                           <---------ZAT18      <---------AHL20(2)                --------->AHL20(1)  ------->GAMYB            --------->ZAT18 ------>ZmHOX2a(2)                     <---------AHL20(2)<-----------GT1       <-------TEIL ----->RAV1(2)--------->KAN4(2)  <---------ANAC46<---------AHL20(1)       ---------->DOF2        <---   tgatccaatttatgtatattcttagataaatactggagtatatatattaaatataattttaaccgaagaacgatagaaaagtccatgggcactagcatgc  18183600                       <---------MYB59        --------->AHL20(2)        <---------AHL20(2)                            --------->ANAC58   <---------ANAC58        <---------AHL20(1)       <---------YAB1       --------->ANAC58   <---------ANAC58       -----   <---------AHL20(2) --------->ANAC55(2)             --------->ANAC46<-------MYC3              ----- <----------DOF2      <---------ANAC55(2)   --------->MYB52(1)        ------->MYC3       <------ZmHOX2a(2) -------DOF2        <-----------GT1       <---------MYB52(2)      <------ZmHOX2a(2)      ============   tttcttttattttattttgaaattacctatttagtactattgaaactaacatatacaagcgaacatggatcacatgcttactcgtttttagatcagcatt  18183700                                                                                              <------                                                                                  --------->YAB1                                                                                  -------->ATHB1                                                                                  <--------HAHB4                                                                                  --------->ATHB12                                                                                  <---------ICU4         <-----------GT1                                                         <---------ATHB12      <---------GLK1(1)                                                          <---------YAB1      --------->GLK1(1)                                                          --------->ICU4     <    <------ZmHOX2a(1)                                       --------->ATHB12   --------->WOX13(1)  <-  <---------TOE2(3)      --------->YAB1                  --------->WOX13(1)  ------------>CBF<-------  <---------TOE1(3)      <---------ICU4           <-------TEIL        --------->AHL20(2)     -------- ---->AHL20(2)          <---------YAB1         ----------->GT1        <---------AHL20(2)     <------- ---->ATHB51         <---------YAB1           --------------->AtSPL3 <---------AHL20(2)     --------- ==========HOX2a_HOX2a--------->YAB1 --------->ICU4    <---------YAB1--------->AHL20(2)    <---------YAB1   atttaaggaattcacaactgcttatcatcatcacatgtgattatgcgaaccgtacatatcattcatttgaatttaatcaaacaatcattagctattataa  18183800      --------->SPL7      <---------TOE2(2)      ------->TEIL      <-------TEIL    --------->TOE1(2)    <---------SPL7    --------->TOE2(2)  <---------------AtSPL3                                                 <-----------GT1 <-----------GT1  --------------->AtSPL3                                              --------->YAB1    <---------YAB1  --------------->AtSPL8                                            <-----------HVH21 <---------ICU4  <---------------AtSPL8                                           --------->ANAC46   <--------HAHB4 ---YAB1 --------->DOF5.7(2)                               <---------AHL20(2)        --------->ICU4 -----------GT1                                            ----------->TBP           <---------YAB1 --------AHL20(2)                     --------->ZAT6       --------->AHL20(2)   <---------DOF5.7(2) --AHL20(1)              --------->RVE1(1)             <---------ANAC55(2) <------------MYB.PH3(1) ->AHL20(2)   <---------DAG2     --------->YAB1      --------->AHL20(2)  --------->MYB52(1) --AHL20(2)   <----------DOF2   <---------ATHB12------------>CBF--------->MYB52(1)<---------YAB1 >YAB1<---------TOE1(2)  --------->CCA1(1)     --------->ANAC46<-----------GT1--------->DOF5.7(2)   <   tttaaacgtacgtttactttttaaaaaatatccaaacataccactatctacacaattacatataaatacccgtcataaccgtttacgattattacttcac  18183900                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                         --------->ARR11(3)                                                         <---------AGP1                                                         <---------ARR11(3)                                                         --------->AGP1                             -                                                     ---------->DOF2                        ---------               <----------ID1                  --------->GLK1(2)                 --------->ICU4    --  <---------ALFIN1              <----------DOF2<---------ARR11(3)         <----------DOF2 --------->TOE2(3) ---------ALFIN1        --------->TOE2(3)      --------->ARR11(3)   <----------DOF2 <---------TOE2(3)   cctcacacttcaacaaaaaaacaaaacataaatactttacaaaatccaaaatctacaaagatctattactctttctctttgtaattaagaaacattaaac  18184000      <---------ICU4      --------->YAB1                                                    <---------At4g35610        <-     <---------YAB1                                                     --------->At4g35610        <-     --------->ICU4                                          --------->YAB1                       <--   --------->YAB1                                           --------->ICU4                    ------- -------->YAB1                      <----------DOF2         <---------ATHB12                  <------ >AHL20(2)                <---------At4g35610  <---------ANAC58    --------->MYB46(3)         ------- --------->GT1    <---------At4g35610          <---------ANAC58  --------->MYB52(1)           <------   atggataataataagcttgtagctgttttgctgatgttcttttcaagtttcttgctgatgaaatcatcaacggctgcttccaactacaatgttgtcagct  18184100                                                            <---------ANAC58                                                           --------->At4g35610                                                           <---------ZAT2                                                       --------->ANAC58                                                       --------->ANAC58                                                 ------->MYC2                                                 ------->PIF5                                                 <-------PIF5                                                 <-------MYC2                    <---------ARR14(2)                                                 <-------MYC3                <---------At4g35610                                                 ------->MYC3          --------->At4g35610                                                --------->ALFIN1       ----------->RAV1(2)                                                =========================================MYC_MYB                                                <---------ANAC58       <---------At4g35610                                                <---------ANAC46       <---------ZAT2                           --------->ZAT14      <------NtERF2          --------->ZAT2       <--------                           --------->ZAT18      <---------TGA1a    <-----------HVH21       ------->GAMYB            --------->SPL7 <---------ZAT14      <---------ANAC58   <---------MYB52(1)   --------->MYB52(1) --------ANAC58         ------>MYB46(1)       <---------ANAC58    <---------SPL7--------->At5g28300 --------ANAC58       --------->DEAR3(1)      <---------ANAC46   <---------ANAC58<---------MYB52(1) -------DEAR3(1)     --------->DEAR3(2)       <---------ANAC58   <---------ANAC58--------->ARR14(2) -->At4g35610        --------->MYB46(3)  <---------ANAC58  --------->ZAT2 --------->At4g35610-------- ---At4g35610     <---------SPL7==========================bZIP_DOF<---------RAP2.6(3)<---------ZAT6 -->ZAT2   --------->MYB52(1)   ---------->DOF2------>NtERF2<---------ANAC58------------>AtMYB77----- ---ZAT2  <---------SPL7------>MYB83     <---------ANAC58  <---------At4g35610 <---------MYB46(3)   tcggtgctaaaccggacggtcgaaccgactccactaaagccttccttggcgcgtggcaagcagcttgccgttcagctgcagcggttactgtaacggtccc  18184200                                                                  ------>ZmHOX2a(2)                                                                  ============================HOX2a_HOX2a                                                                 =============================HOX2a_HOX2a                                                                 <------ZmHOX2a(2)                                                                --------->ARR11(3)                                                                <---------AGP1     --------->HSFB2a(1)                                        <---------ARR11(3)     <---------HSFB2a(1)                               <---------TOE2(3)     <---------HSFC1(2)                               --------->MYB52(1)     --------->HSFC1(2)                      <------NtERF2      <---------ARR14(2)                ---     <---------At4g35610                    ------>NtERF2       --------->AGP1                    <--  <------ZmHOX2a(1)                         --------->LBD16     --------->ARR14(2)      <---------LBD16 ---HVH21                                  ----------->RAV1(1) <---------CCA1(2)       ------>ZmHOX2a(1) ->PCF5                              <-------TEIL     <-----------GT1      --------->ATHB12    <----- ---->LBD16            --------->ALFIN1 --------->ANAC46   <-----------HVH21      <---------At4g35610   gagaggaagcttcttgctcaaaccggtggagtttcgaggtccatgccgcagtagaataacgtttcagatctatggaacgattgtagctccttcggattac  18184300                                                        --------->ATHB51                                                        --------->ATHB12                                                        <---------ICU4                                                        <------------ATHB5                                                        <--------ATHB1                                                        -------->ATHB1                                                        --------->YAB1                                                       --------->ICU4                          ------>ZmHOX2a(2)            <---------ATHB12                        <---------AGP1            ------>ZmHOX2a(2)                        --------->ARR11(3)        =====================HOX2a_HOX2a                        <---------ARR11(3)       ======================HOX2a_HOX2a                        <---------ARR14(2)       <------ZmHOX2a(2)                        --------->ARR14(2)       --------->GLK1(1)                  --------->ATHB12              <---------ARR11(3)                <---------MYB52(1)              --------->ARR14(2)           --------->GLK1(2)                    <-----------ARR10           <---------ARR14(2)                   <---------AGP1         <---------HSFB2a(1)                    <---------ARR14(2)         --------->HSFB2a(1)                   <---------CCA1(2)         <----------TaMYB80                    <---------ARR14(1)  <---------ARR14(2)   <---------CCA1(2)      --------->LBD16  --------->ALFIN1<---------MYB46(3)        <---------LBD16         <----------DOF2      <----------DOF2 ------>LBD16  --------->LBD16            --------->MYB52(1)     <---------ARR14(2) <-------TEIL <--- -------LBD16<---------LBD16              <-----------GT1       <------ZmHOX2a(1)  --------->ALFIN1 ----At5g28300<---------ANAC46      ---------->DOF2  --------->WOX13(1) <---------At4g35610      <---   cgcggtttgggaaattccggttattggatcttgttcgtgaaagttaaccggatctcaatcattggaggaactttagatgctagaggtgcttctttttggg  18184400                                                                     <---------ARR11(3)                                                                     --------->AHL20(1)                                                                     <---------ICU4                                                                     <---------AHL20(1)           --------->LBD16                                      <---------AHL20(2)          <---------HSFB2a(2)    --------->ATERF1(1)        <---------DAG2         <---------LBD16         <------NtERF2              <----------DOF2 --------->ALFIN1       <---------ARR14(2)       ------>NtERF2          <------------MYB.PH3(2)           --------->At4g35610       --------->GLK1(2)      <------NtERF2            <---------MYB46(2)  <---------LBD16       --------->ARR14(2)     --------->RAP2.3(1)      <---------MYB52(2) <---------ANAC46    -------      --------->GLK1(1)      <---------ATERF1(1)       <---------MYB59    <---------ANAC58    <------      <---------GLK1(1)   <-----------HVH21          <-----------GT1 --------->ARR11(3)  <---------At4g35610 ------ANAC58            <-----------RAV1(1) --------->MYB52(1) --------->AHL20(2)    <---------AHL20(2) ------ANAC58---------->DOF2<---------DEAR3(1) <------------MYB.PH3(1)    <---------ANAC58 ----------   cttgtcgaaaatccggaaagagttgccctgttggcgccagagtaagataaccgtttaactaacttttttaatattttcgtgggggtttttaatctgacat  18184500  Previous    Next  AGI:  At2g43890.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G05650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68140.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 18184001    to: 18185467    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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