Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->At4g35610                                                 <---------YAB1                                                 <---------AHL20(2)                                                <---------AHL20(1)                                              --------->AHL20(1)                                             --------->YAB1  ------>MYB83               --------->YAB1  --------->AHL20(2)  ------>MYB46(1)        ---------->DOF2   --------->AHL20(1) ----------->RAV1(1)--------->TOE2(3)      --------->AHL20(2) -------->AtMYB61   --------->TOE1(3)     --------->YAB1 -ICU4            --------->ARR11(3)    --------->AHL20(2)                        <---------GLK1(2) >YAB1            <---------ARR11(3)----------->GT1 <---------YAB1 --------->ATHB12   caccaacatactaaacttgaaatcttaaaaagcataaacagaaaaaataatattattatctgaatcaattgattaagttcaaaagaatatcaaactgttt  18179700                              ----------->GT1                  <---------AHL20(1)                  <---------ARR11(3)                  --------->AHL20(1)                  --------->ARR11(3)                --------->ARR11(3)                                                <---------ANAC46                <---------ARR11(3)                                                <---------ANAC58                <---------AHL20(1)                                                <---------bZIP60(2)             --------->AHL20(2)                               --------->YAB1      <---------ANAC58     <----------ID1     <---------YAB1           <------ZmHOX2a(1)              <---------DOF5.7(2) ---------->DOF2--------->AHL20(1)             <---------TOE2(3)                --------->MYB52(1)   atgtaaagagacaaaaaaaatattttctgattcagtgaattaagttgataaggaaactgatcaataagcatttgcatatagataacgtggaaactgagag  18179800                            <---------ANAC58                        <---------ANAC58                                              <-------TEIL                        <---------ANAC58                                          <---------ICU4                --------->ATHB51                                                 --------->ICU4                <---------ICU4                                                 --------->YAB1                <--------ATHB1                                              --------->ANAC58     <---               <---------ATHB51                                             --------->ANAC46    -----               <---------ATHB12   <---------DAG2                            --------->ANAC58  -------               --------->ICU4     <----------DOF2--------------->AtSPL3 --------->ANAC46     <-------           ------------>CBF <---------ANAC58     --------------->AtSPL8 --------->ANAC58     --------   <----------DOF2    --------->AtLEC2           <---------------AtSPL8 --------->ANAC58    <--------   tacaactttgttttgcaataattcatgcatgcgtcgctttatcgactaatattcgtacataacaagttgtactcacacaagtcataagtacattatcatt  18179900                                                                                              <------ZmHOX2a(2)                                                                                       ------>ZmHOX2a(2)                                                           ----------->HVH21          <------ZmHOX2a(2)                                                          <---------MYB52(2)         <---------ARR14(2)                                                         <---------At4g35610         --------->ARR14(2)                                 <---------ZAT18         --------->At4g35610      --------->ANAC55(2)                                <-----------HVH21       ------->TEIL              --------->ANAC46                              --------->MYB59        <---------ALFIN1             --------->ANAC58 ------AHL20(2)               <---------TOE2(3)      --------->DEAR3(1)           --------->ANAC55(1) ---->AHL20(2)      --------->ANAC55(2)             --------->ANAC46              --------->ANAC58 -->TOE2(3)         --------->ANAC58               ------->TEIL                  <---------LBD16   -- -HAHB4             <---------ANAC55(2)          --------->ZAT18           <---------ICU4 --------->SPL7 ->YAB1             ----------->GT1         --------->AHL20(2)            <---------YAB1<---------SPL7 -YAB1              --------->ANAC58        <---------AHL20(2)            --------->ICU4--------->TOE1(2)   aaataacatagactatggaatcaagtaacatttaggtcacttatattttaatgcaccgcatctaacgcgattagtcattaatacacggatcgtccgatct  18180000                                                                       --------->YAB1                  <---------AHL20(2)                                   <---------ICU4   <---------AHL20(2)                          <---------ICU4         <---------ATHB12  <---------AHL20(1)                           --------->ATHB51   ------------>CBF  --------->AHL20(1)        ----------->GT1   --------->ICU4  --------->YAB1  --------->AHL20(2)     <-----------GT1      <---------YAB1  <---------ICU4   --------->ANAC58  <---------AHL20(2) ----------->TBP       <---------YAB1     --------->ATHB12 --------->ANAC58 ------->YAB1 <---------AHL20(2)   <-----------GT1           <---------ATHB12---------->DOF2   aaaataaaatttgtttttattttatatatacagtatataacctttctcattatttcttcttaaatcattacaatcatcacaaagccatcgcaaattagaa  18180100                                                                                    --------->ANAC55(1)                                                                                    --------->ANAC55(2)                                                                                    --------->ANAC58                             <---------ANAC58                                       <---------ANAC55(2)                             <---------ANAC58                             --------->ANAC58                         <----------DOF2                  <---------AHL20(1)        --------->ANAC58                   <---------ARR11(3)         <-----------GT1<-----------GT1        --------->ANAC46               --------->MYB46(3) ------>NtERF2           <---------ARR11(3)   <---------At4g35610             ----------->RAV1(1) --------->ANAC46         --------->AHL20(1)   --------->At4g35610  < --------->CCA1(2) --------->ARR11(3)  --------->YAB1 --------->YAB1      --------->ANAC58          <   gagatttaagatggccaacaacatctcctttccttgcgccatcatatttttctctatcaatattttcttcttaatcaagtcatcacacgcaatgccatcg  18180200                                                                                     --------->MYB52(1)                                                                                 <---------RAP2.3(1)                                                                   <------MYB46(1)  ----------->HVH21                                                                   <------MYB83  ------>NtERF2                                                               <---------At4g35610--------->At4g35610                  <---------ZAT2                      ------>ZmHOX2a(1)         <---------DEAR3(1)             --------->SPL7                           <---------DAG2            <---------RAP2.3(2)             <-------TEIL               --------->ARR14(2)     <---------ZAT2  <---------At4g35610             <---------LBD16            <---------ARR14(2)     --------->At4g35610<---------At4g35610            --------->CCA1(2)          --------->At4g35610 <-----------GT1     <---------LBD16           <---------SPL7 ----------->HVH21           <----------DOF2       <---------ANAC58           --------->ARR11(1)          <---------At4g35610 >>>>>>>>>WRKY18  ----------->RAV1(2) -----------GT1   --------->ZAT2    <---------At4g35610   ----------->HVH21 <---------ANAC58 ---------DOF5.7(2)       --------->ALFIN1 ----------->HVH21   --------->ZAT2 <---------ATERF1(1)   tttaacgtccaaaggtacggagctagaggtgatgggagagcagatgcgaccaagtcctttttgacagcttggtcattagcctgcggctcacgggctcgag  18180300                                                                                              <------                                                                                              <------                            <------MYB83                                                      -------                        <---------ARR14(2)              --------->AtLEC2                      -------               <-------PIF5 ----------->GT1            ------>ZmHOX2a(1) <----------DOF2  <---------ALFIN1               ------->PIF5--------->MYB59            <---------ANAC58   ============================               --------->LBD16                        <---------ANAC58<-----------GT1     --------->ZAT6             <---------LBD16<------MYB46(1) <----------DOF2       <---------YAB1          <---------HSFB2a(1)   ccatggtctacgttccccgtggaacatatttggtcaaaaacctagtcttttggggtccttgcaagaacattataactttcaaaaacgatggaacactcgt  18180400                                                                               ------>NtERF2                                                                          <---------At5g28300                                                                  ------>ZmHOX2a(2)                                                                 <---------GLK1(1)                                                                 <------ZmHOX2a(2)                                                                 --------->GLK1(1)                                                                --------->ARR14(3)                                                                <---------ARR14(3)                                                                --------->ARR11(3)                                                                <-----------ARR10                                                                <---------ARR11(3)                                  <---------MYB46(3)            <---------ARR14(2)  --------->ATHB12                                  --------->ATHB12              <---------AGP1 <---------ATERF1(1)  <    <---------At4g35610         <---------MYB52(1)              --------->ARR14(2) <------NtERF2    - ---TGA1a                      --------->LBD16                 <---------CCA1(2)<------NtERF2       < ---O2<---------ZAT18         <---------ANAC46                 <---------ARR14(1) ------>NtERF2     - -->O2--------->ZAT14 --------->ANAC55(2)           ---------->DOF2    <----------DOF2             <- -->TGA1a--------->MYB46(3)  <---------LBD16<----------DOF2   --------->LBD16  --------->ABI4(2)   -- ===bZIP_DOF      --------->CCA1(2)     <---------GLK1(2)   <---------LBD16   --------->ALFIN1    <--   ggctccagcgaactactgggatataggtaattccggttattggattcttttcgctaaagtaaaccggatctcggtttacggtggcaccattgatgctaga  18180500      --------->ATHB12 ---------At4g35610 -------->ZAT2 ---------ZAT2                                                                                <------ -------->At4g35610       --------->DAG2                                      --------->ARR14(2)   <- --------ARR14(2)       ---------->DOF2                                       <---------ARR14(2)   -- ------->ARR14(2)--------->HSFB2a(2)            <-------TEIL             --------->MYB52(1)  <------- ----ZmHOX2a(1)  <---------HSFB2a(2)     ------>ZmHOX2a(1)      --------->TOE2(3)            --------   ggagctggttattggtcttgtagaaagaaaggtagtcattgtcctcaaggtgcaagggtatgtttacatcaaaactagcggatttgatttgttcatttat  18180600  Previous    Next  AGI:  At2g43880.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT2G43890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68140.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 18180111    to: 18181559    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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