Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------>ZmHOX2a(1)                              ---------->ID1                             <-----------GT1                       --------->AHL20(2)                       <---------AHL20(2)                      --------->AHL20(2)                      <---------AHL20(2)              ----------->GT1                     -----------                      <---------AHL20(1)             --------->HSFB2a(2)      <---------At4g35610                  --------->AHL20(2)                 --------->HSFC1(1)       --------->At4g35610                  <---------AHL20(2)                 <---------HSFB2a(2)    <---------ANAC46      ---                 --------->AHL20(2)              <---------ANAC46      --------->YAB1   <---------TOE1(3)     --------->YAB1   --------->AHL20(1)<---------AHL20(2)            <---------YAB1    <---------TOE2(3)    <-------TEIL <---------AHL20(2)  --------->YAB1  <---------HSFC1(1)<---------ICU4  --------->MYB52(1)   ttcacattcatatttggaatttaatttattttttcctattaataaatggtgatgtctagaaaaaaaaaacttataatggctgatgaaattaagggtaaaa  18174900                       <---------ALFIN1                                                        <-----                     ------>NtERF2                                                             ------                    --------->ANAC58                                                      ------>NtERF2                    --------->ANAC58                                                      --------->LBD16                    --------->ANAC46                                                <-----------ARR10                 <---------MYB52(1)                                                 --------->ARR11(3)                <-------GAMYB                 <----------DOF2           --------->HSFB2a(2) <--------           <---------SPL7                 --------->LBD16               ------>ZmHOX2a(1)--------->DEAR3(1)          --------->ANAC46              <---------LBD16            --------->HSFC1(2)<---------GLK1(1)          --------->ANAC58          <---------ANAC58               --------->HSFB2a(1)   --------->ANAC46          --------->ANAC58          <---------ANAC58               <---------HSFC1(2)--------->GLK1(1) >GT1     --------->ANAC55(2)      <---------ICU4            ---------->DOF2        <---------ARR11(3) -------->GT1------->TEIL         --------->ICU4  <-----------GT1  <---------HSFB2a(1)  <---------LBD16   tagtaaacttgcacgtaccgttgcgccactggggcaattcttgccggactttttacaatcccataaagaagctcctcgagcgtcaagaactccgccgtat  18175000                                                                                          <---------ANAC55(2)                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                                       --------->ARR11(1)                                                                                       <---------ARR14(2)                                                                                 --------->DEAR3(2)                                                                          --------->AtMYB61    <-----                                                                         --------->MYB46(3)    ------                                                                        >>>>>>>>>>>>>>>>>LFY   ------           --------->HSFB2a(2)                                        --------->ATERF1(1) --------->ANAC58           <---------HSFB2a(2)                                        --------->MYB46(3)  --------->ANAC55(2)         <------NtERF2                                         <---------At4g35610     --------->ARR14(2)        <---------RAP2.6(3)                                    --------->At4g35610    <---------DEAR3(2)       <---------ANAC46                                        <---------ZAT2   <---------At5g28300 --------->ALFIN1                                              --------->ZAT2   ------->TEIL   ------ ----ARR14(2)     <---------HSFB2a(2)                          ----------->RAV1(2)<---------ANAC46--- --->ARR14(2)  --------->GLK1(2)                          --------->YAB1------>NtERF2<---------ETT(2) -ANAC46------>NtERF2      --------->GLK1(2)   ------>ZmHOX2a(1)     <---------ATERF1(1)  --------->ANAC55(1)   acggtgatgccgtcgagatgctggaagaaaatccaatagtcttcatttcctataactcgataatcagctggagccaccaatgtaccgtcgatacggaacg  18175100                                  --------->MYB52(1)                                  <-----------GT1          <---------ANAC58      <---------MYB52(2)           --------->HSFB2a(2)          <---------ANAC58     --------->ANAC58           <----------DOF2    <---------ANAC58           --------->ANAC58          <----------DOF2    <---------ANAC58         ---------->DOF2         --------->DEAR3(1) ------->GAMYB          --------->TOE1(2)           --------->DEAR3(2) ----ANAC55(2)         <---------HSFC1(2)          --------->MYB52(1) --->ANAC58            <---------HSFB2a(1)        <---------ARR14(2) --->ANAC55(2)         --------->MYB46(3)         --------->ARR14(2)     --------->YAB1 --->ANAC58            --------->HSFC1(2)       --------->ANAC58  --------->MYB46(3) ------>MYB52(1)       --------->HSFB2a(1)      --------->ANAC58--------->PCF2   <------ZmHOX2a(1)   taacgggcttgggcttgcatttggaaccatcgaaagtaacgcttcttaacaagaaccggcctttgggaaccacaatggtaacaggacgagacgatgcaca  18175200                        <----------DOF2        --------->SPL7                   ---------->DOF2      <----------DOF2            ------->GAMYB       <---------ANAC58            --------->RAP2.6(2) <---------ANAC46            --------->DEAR3(1)  <---------ANAC55(1)    --------->At4g35610            --------->ANAC46<---------ANAC58  <---------MYB52(1)           --------->MYB46(3)   <---------RAP2.6(2)    <---------At4g35610           --------->DEAR3(2)   <---------ANAC58 --------->LBD16         --------->ARR14(2) <-------GAMYB     <---------SPL1(1)                      <---------At4g35610         --------->MYB52(1) <---------ANAC58<---------ANAC58                         --------->At4g35610         <---------ALFIN1 <---------AtMYB61 <---------ANAC58                   <------ZmHOX2a(1)         <---------ARR14(2)<---------MYB46(3)<---------SPL7  ---------->DOF2 <---------TOE1(2)     --   agcggtttgccaaaccgccataaaagctttggttgcgtctgtctttccgtccggcttagctccaaaagacaatacattgtaggattgagcagaacaagaa  18175300                                                           <------------CBF                                                           >>>>>>>>>ARR1                                                           >>>>>>>>>ARR2                                                         <---------YAB1                                                        <---------TOE1(2)                                                        --------->SPL7                                                        <---------TOE2(2)                                                      --------->TOE1(2)                                                      --------->TOE2(2)                                                      <---------SPL7                               --                                                     <---------ANAC58                            <---                                                    <---------TOE2(3)                          <-----                                                   --------->MYB52(1)                          ------                                    --------------------->WRI1               --------->CCA1(2) ------                                --------->ANAC58   <---------DOF5.7(2)    <---------YAB1      -------                                --------->ANAC58 --------->DOF5.7(2)<---------ZAT6          <--------      >>>>>>>>>TBF1 <------ZmHOX2a(1)         ---------->ID1      ----------->GT1           --------- ------->CCA1(2)   <----------ID1>>>>>>>>>>>>>>>>>LFY<---------ANAC58   ---------->DOF2    <------ZmHOX2a(1)   gagatgaagaagaaaacgaagaggacaagaagtgaagccattgtgtttttcgctaacgtacgattgtttagtgataaagatagagagagaagaggagtgg  18175400         <---------MYB46(3)      <---------MYB46(3)     --------->ALFIN1     <---------DEAR3(1)     <---------AtMYB61   <---------MYB46(3)  <---------ZAT6  <---------AtMYB61  --------->ALFIN1     <-----------GT1  <-----------TBP ------->ALFIN1        --------->MYB52(1) ------ANAC46--------->ALFIN1       ----------->GT1 ----ZAT14 <---------ANAC58       <---------ANAC46 --->ZAT18 --------->ALFIN1       <------------CBF --->ZAT14 <---------ANAC46    <---------TOE2(3)                                 <------------------- -->ALFIN1 <---------ANAC58 <---------MYB52(1)          <---------ANAC46      <---------ANAC46 -ANAC46<---------AtMYB61   <---------ARR14(2)       <-----------RAV1(1) <---------MYB46(3) >ALFIN1--------->ALFIN1    --------->ARR14(2) <---------ZAT6            <-----------RAV1(1)       <-   agtagtggtggtggtgtgggagttttaacggttatggattgtatttatagtgtttgtgttgtatgcgaagggcatttgttgtttgttttgttttgtttga  18175500                                                <---------ANAC58                                                <---------ANAC58                                            <------------CBF                                           --------->ATHB12                                           <---------ICU4                                       -----                                          <---------YAB1             ----------->RAV1(1)      <------MYB46(1)                                          --------->ICU4          --------->ANAC58            <------MYB83                   --------->AHL20(2)   <---------ICU4            --------->ANAC58            <------       --------->AHL20(2)               -------->HAHB4          ---------->DOF2              --------       <---------AHL20(2)               --------->YAB1        --------->TOE2(3)      --------->YAB1 -----ANAC81   <---------AHL20(2)      --------->ICU4       ------->TEIL      <---------AtLEC2<------ --------AHL20(2)  <---------AHL20(2)  <---------ATHB12<---------AtLEC2     <---------YAB1   --------   tttttttgtttaattagtttattaattctctgaataaacaaatgattattgggtttggcatgaacctaaagcaacattttgaatgaataagaaattaggt  18175600                                                                                                <----                <---------YAB1                                                                  <----              --------->ATHB12                                          <---------AHL20(2)      -----  <------------CBF    <---------YAB1                                  <<<<<<<<<MYB98  <---------ANAC58 ------>GT1<---------AtLEC2         --------->ANAC58                ----------->GT1   <---------ANAC58 ---ANAC55(1)<---------YAB1         --------->ANAC58      --------->CCA1(2)       <---------ARR11(3) ->MYB59   <---------ANAC58         --------->ANAC46     <---------ARR11(3)      --------->HSFB2a(1) ---ANAC46 <---------ANAC58    --------->YAB1            --------->ARR11(3)      <---------HSFB2a(1) ->MYB111(1) --------->ICU4  --------->AtLEC2     ------->TEIL      <---------YAB1--------->ARR11(3)   gtaaaattgttttgcatgattattttcattcattcaaaacgcatcatatatgtatataagatatgttgttatgttaaaatggaagatttcgttcatatta  18175700             <----------DOF2            ------>ZmHOX2a(2)                                                            <---------At4g35610           <---------RVE1(1)        --------->ATHB12                                   <-----------RAV1(2)           <------ZmHOX2a(2)       <---------YAB1                                     <-------TEIL          --------->AGP1        <---------SPL7                                     <------MYB46(1)          <---------ARR11(3)   <---------ANAC58                              <---------TOE2(3)          --------->ARR11(3)   <---------ANAC46                           --------->AHL20(2)          <---------AGP1       <---------ANAC58                  ----------->GT1   <------MYB83   ------------>CBF       <------------CBF                 <---------ZAT2 <---------AHL20(2) -----AHL20(2)          <---------AHL20(2)                 <---------At4g35610    --------->MYB59 -----AHL20(1)          --------->AHL20(2)     <----------ID1  <------------CBF   --------->MYB111(1) ---->AHL20(1) --------------->AtSPL8        --------->YAB1--------->At4g35610    --------->MYB46(2)   tattttccaatagatcttttgtactattaattgtcgtatgagtggaattagaacaaaactcagctaattgtgaaaaataaatgttaggtccagttgagtt  18175800  Previous    Next  AGI:  At2g43870.1    Description:  polygalacturonase, putative / pectinase, putative. similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Pyrus communis] (GB:CAH18935.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 18173692    to: 18175341    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43871.1    Description:  unknown protein Range:  from: 18175781    to: 18175906    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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