Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>MYB83                            ------>MYB46(1)                   ------>ZmHOX2a(2)                   =================================HOX2a_HOX2a                  ==================================HOX2a_HOX2a            --------->ATHB12                  <------ZmHOX2a(2)                                  --------->ANAC58                 <---------AGP1--------->YAB1                        --------->ANAC58                 --------->AGP1<---------ICU4                        --------->ANAC46                 <---------ARR11(3)                  <---------At4g35610  --------->ICU4           --                 --------->ARR11(3)                  --------->At4g35610  <---------YAB1    --------- ---YAB1   <---------YAB1 <---------MYB59    <------ZmHOX2a(1)--------->YAB1    ---------->DOF2  ----   ttgctcatcaattttcatagatctaataccaaattatcacacatataggagagtcatctaacaattagcacaagtcatgagtgaaagagactaagcatga  18126600           ----------->HVH21     <---------ICU4     --------->YAB1  <---------ICU4  --------->YAB1                                   <---------YAB1 --------->ICU4                       --------->AHL20(2) <---------YAB1                  <---------ATHB12<-----------GT1 ------->YAB1               --------->YAB1     <----------DOF2              <---------AHL20(2) >YAB1 <---------YAB1--------->At4g35610       <---------DAG2     ---------->DOF2                <--- --->TEIL<----------DOF2  ---------->DOF2<-----------GT1         --------->AHL20(2)      <----------DOF2   atcataatcatctttgacataggtgctcaaaagtaatcaattttttcaactttactattcaactcaataaaagaatttttaatcaacaattcttttcaag  18126700                                                                                              <------                                                                                              -------                                                 --------->ZAT18                             <-------                                                 <---------ZAT14                             --------                                                 --------->ZAT14                           --------->YAB1                                          <---------ICU4                                   <---------ICU4                                        <---------TOE2(3)                                  <--------HAHB4              <---------ANAC58         --------->AHL20(2)                                 <---------YAB1      <---------DAG2                   <---------AHL20(2)                               --------->YAB1      <----------DOF2                  --------->YAB1                               --------->ATHB12 ------->TEIL <---------ANAC58       --------->AHL20(2)                            <---------YAB1   - <-----------GT1      <---------DAG2--------->YAB1                            <---------TOE2(3) <---- ------ARR11(3)       <----------DOF2<---------AHL20(2)       <---------At4g35610 ------->TEIL-------   atgtatcccttttttttcttgcaactttttctcaactatattaatatttagtatactgctacttagctactcgatgttttgatgtatcattgatcattat  18126800           --------->ATHB51           --------->ATHB12           <---------AHL20(2)           --------->AHL20(2)        --------->YAB1        <---------ICU4        --------->ATHB51        <--------HAHB4        <--------ATHB1       --------->ICU4                                                                               <       <---------ATHB51                                                                             <       <---------ATHB12                                                                             -     --------->YAB1              ----------->RAV1(1)                                                - ---ICU4-------->HAHB4           <---------DDF1                                                <----- -->ATHB12 <---------ICU4      --------->DEAR3(2)                                             ------- --YAB1<---------YAB1         <---------At5g28300                                             ------- ->ICU4--------->AHL20(2)    <-----------GT1                                                --------- -------->WRKY38(1)      --------->AHL20(1)               --------->ICU4                   <---------ARR14(2) -----YAB1<---------YAB1 <---------AHL20(1)          ----------->GT1                       --------->ARR14(2) -->ATHB51--------->ICU4 --------->AHL20(2)          <---------ZAT6  --------->At4g35610   <---------GLK1(2)   tgttgactaataattatttgatacaaatattttaccgacatatgtaagaacaatagtgtcaaaattgaagcatctcaagggtattttagaacagataccc  18126900                                                        --------->TGA2(2)                                                       <-----------TGA1             <---------YAB1                           >>>>>>>>>>HY5         --------->AHL20(2)                           <<<<<<<<<<HY5       <---------YAB1                                 <---------ANAC55(2)     --------->AHL20(2)                               <---------bZIP60(1)     <---------AHL20(2)                               --------->bZIP60(1)    <---------AHL20(2)                                --------->ANAC55(2) <---------AHL20(2)                                   --------->O2 --------->AHL20(2)                                   <---------O2             <---------AHL20(2) ---------AHL20(1)                                    <---------TGA2(1)        --------->AHL20(2) ---------AHL20(2)   <-----------GT1                <---------TGA2(2)         --------->AHL20(2) -------->AHL20(1)  ---------->ID1                 ----------->TGA1           <---------AHL20(1) -------->AHL20(2) <-----------HVH21         ------------>CBF    ------>ZmHOX2a(1) ----MYB59   <---------AHL20(2)             --------->YAB1      --------->TOE2(3)                  -- -->ANAC58 --------->YAB1            --------->ANAC58 --------->TGA2(1)       <---------AHL20(2)   -- -->ANAC58<---------YAB1             --------->ANAC46----------->STF1   --------->YAB1      --------- >GLK1(1)<---------AHL20(2)          --------->ANAC58<-----------STF1--------->YAB1 <-----------GT1<-   aatttatttatttttataatttgtcaccttgtttttcacacacaaatgacaatatgacgtcattttccttattagaataatttttttaacaaaaaaaaga  18127000           <---------CCA1(2)           ---------->ID1         <---------ANAC58         <---------WRKY12                            --------->TOE2(2)         <---------ANAC58         <---------WRKY38(1)              --------->ANAC46   <---------AHL20(2)             ---------->CDC5                  --------->ANAC58      --------->ANAC58   --------->AHL20(2)            *TSS                        <---------ANAC46 --------->TOE1(2)  <---------AHL20(2)            --------->ANAC46             ============================RAV ------->AHL20(2)      <---------ANAC58                      <-----------RAV1(1)         --------->ANAC58 ------->ATHB51        <---------ANAC58                  <----------DOF2     ----------->RAV1(2) ->DOF2<-----------GT1 <---------ANAC46         --------->ANAC58   --------->ANAC58     --------->DAG2 --------AHL20(2)  <------------CBF             --------->ANAC58<---------ETT(2)       ---------->DOF2   attatttattttcgtctctcttattgcttgctacgctcaacgctgtgcataagcattctctttctgtggacgaaactaaacctgagagaaaaagccagaa  18127100                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                            --------->LBD16                                                                           --------------->AGL15                                                                           <---------HSFB2a(2)                                                                          ----------------->AGL2                                                                          ----------------->AGL3                                                                        --------->ARR14(2)                                                                        <---------ARR14(2)                                                                       <---------CCA1(2)                                                                     --------->YAB1                 <   ------>MYB83                           <---------AGP1     <-------TEIL <-----------------AGL2    <   ------>MYB46(1)                 --------->ZAT18 ---------->DOF2--------->YAB1        ---------->DOF2 <---------MYB59                   --------->At4g35610    <------ZmHOX2a(1)--------->HSFB2a(2) <-----   gaaccaaactcagaccgagagatagagattgagggagagctctagctctgtagaaaagaaggattcattcatcatatccagaaatggctctaaagtttaa  18127200                                                                             ------>ZmHOX2a(1)                                                                         <---------ARR14(2)                                                                      <---------TOE1(2)                                                                 ===================HOX2a_HOX2a                                                                <------ZmHOX2a(2)                                                                <---------GLK1(1)                                                                --------->GLK1(1)                                                                ====================HOX2a_HOX2a                                                      ==================HOX2a_HOX2a                                                      =================HOX2a_HOX2a                                                ------>NtERF2  <---------ARR11(3)                                               <---------ALFIN1<---------AGP1<---------At4g35610                                               --------->DEAR3(1)------>ZmHOX2a(2)                                             --------->LBD16   --------->ARR11(3)                                             <------NtERF2     --------->ARR14(2)                                             ------>NtERF2     <---------ARR14(2)                                            --------->ANAC58   --------->ARR14(3)          --------->At4g35610               --------->ANAC46   --------->AGP1--------->At4g35610       <------NtERF2                        --------->ANAC58  <---------CCA1(2) ------>NtERF2  <---------AtMYB61                        --------->SPL7<----------DOF2 <---------ARR11(3)        -- ----------DOF2                          <-----------HVH21    <---------At4g35610                  -- ---------MYB52(1)                ------>ZmHOX2a(1)   ------>ZmHOX2a(1)  --------->ARR14(2)      <--- ------GT1<---------At4g35610     =====================================HOX2a_HOX2a         <<<<<<<<<TBF1   ccctttggtggcatctcagccttacaaattcccttcctcgactcgtccgccaactccttctttcagatctcccaagttcctctgcctcgcttcttcttct  18127300                   --------->ANAC58                   --------->ANAC58                   --------->TGA1a                   --------->O2                   =====================bZIP_DOF                 <---------ALFIN1                <------NtERF2               ------>NtERF2              <---------TCP20             ------>NtERF2            <---------ATERF1(1)           --------->DEAR3(1)          <---------LBD16        <---------ARR14(2)       --------->At4g35610       <---------At4g35610       --------->ZAT2                                                                        <-------       <---------ZAT2                                                                        -------- <-----------ARR10 --------->ANAC46                             <---------GLK1(2)       <---------At5g28300 ------->LBD16--------->PCF2                                   <------------------------ANAC81 ---->NtERF2--------->LBD16             --------->YAB1     <----------DOF2            <---------ZAT14 ------LBD16------>NtERF2    <----------DOF2        <---------CCA1(2)            <----------DOF2<----   ccggctctcagctccggccccaagtcagtctctttctctccatcatcgtctctcttatctactttcgattctctctgtttcatctttgtttactgtgttc  18127400                                      --------->HSFB2a(2)      <---------ANAC46      ------>ZmHOX2a(2)      <---------ANAC58    <---------AGP1                     <---------ANAC58                    ----      <---------ANAC58    --------->ARR14(2)                 <---------ANAC58                    ----      --------------------->WRI1     <-----------GT1    --------->MYB52(2)                       <---    <---------YAB1        <---------ARR14(2)        <---------ZAT6                               <--- --ZAT14                  <---------ARR11(3)      <---------ANAC46                              ----- ->ZAT14  ---------->ID1  --------->ARR11(3)    --------->ZAT14        <---------ANAC58        ------ -----LBD16  <---------YAB1<---------GLK1(1)    <---------ZAT14        <---------ANAC58   -----------   tgggttttgcttgttcttatcgatattggatctacgttttctcgattttgttcagtgttatttgcttacatttgcttaatctcgagtgtgatttcaataa  18127500  Previous    Next  AGI:  At2g43710.1    Description:  SSI2 (fatty acid biosynthesis 2); acyl-[acyl-carrier-protein] desaturase. similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to stearoyl-ACP-desaturase [Brassica napus] (GB:AAT65205.1); similar to Stearoyl-acyl carrier protein desaturase [Brassica napus] (GB:CAA52786.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:P29108); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Stearoyl-ACP desaturase, conserved site; (InterPro:IPR005803); c Range:  from: 18127033    to: 18129966    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version