Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             XXXXXXXXXXXXXXXXXXXX>MIR868                           ------>ZmHOX2a(1)                       --------->ARR14(3)                       <---------ARR14(3)                       <---------GLK1(2)                       <---------ARR11(3)                       --------->AGP1                       <---------ARR14(2)                       --------->ARR14(2)                       --------->ARR11(3)               <----------DOF2            --------->ARR11(3)            <---------ARR11(3)     ----------->GT1           <---------CCA1(2)  --------->ANAC58                                                <------           <---------GLK1(1)  --------->ANAC58                                                -------     <---------At4g35610 ------>ZmHOX2a(2)                  --------->MYB52(1)              <-------PIF5     --------->At4g35610<------ZmHOX2a(2)                --------->At4g35610                ------->PIF5   <-----------RAV1(2)<---------At4g35610                <---------At4g35610      --------->ANAC46  --------->LBD16     <---------GLK1(1)             --------->WOX13(1)      --------->TOE2(3) ------- --->GT1   --------->GLK1(1)---------->DOF2        --------->ZAT6           --------->TOE1(3)--------   aaaccgcagatggatatcttttgcagatcctcaagcactgaaaatacttcttatcactcagataactgagagagaaaaccataaacacaatgcaagtgca  18105800                                                          <---------ARR11(3)                                                          --------->ARR11(3)                                                     --------->TOE2(3)              ---------->DOF2                     ----------->RAV1(1)           ------>ZmHOX2a(2)                   --------->ANAC46          <------ZmHOX2a(2)                    --------->ANAC58        <---------CCA1(2)                      --------->ANAC58       ----------->ARR10                       --------->ANAC55(1)       --------->MYB59                         --------->ANAC55(2)   <---------ZAT6                   <---------AHL20(2)    <-----------ARR10 ---ZAT14--------->ARR11(3)         --------->AHL20(2) --------->AHL20(2)                         <-- -->ZAT14<---------ARR11(3)    --------->ETT(2)<---------ANAC55(2)                        --------->ATHB12 -->ZAT18<---------AGP1       ---------->ID1<---------ARR14(2)                           <---------ATHB12 ->ALFIN1--------->AGP1   <----------DOF2   --------->ARR14(2)   --------->YAB1 <---------ARR11(3)---   gggaagagttagatcttaaagtttagaactttgtcgatataaatggaatacgcaacataaaatctaagcacaattgaaacaatttcttcaaatcattcgg  18105900                                                                         --------->ANAC58                                                          ----------->HVH21         <---------AHL20(2)                                                        --------->At4g35610        --------->AHL20(2)                                                     <---------HSFC1(2)  --------->ANAC46                                               <-----------HVH21         --------->ANAC58                                              ------>ZmHOX2a(2)          <---------ANAC55(2)     ----              --------->ANAC58              <---------ARR14(2)           --------->ANAC55(1)  -------              --------->ANAC58              <---------ARR11(3)        <---------REM1(2)       -------              --------->ANAC46              --------->ARR14(2)      --------->ANAC46<---------YAB1 --    --------->ANAC46                        --------->ARR11(3)    <-----------GT1  <---------AHL20(1) -------GLK1(1)                        ------->GAMYB --------->HSFC1(2) <---------LBD16       ------- ------>GLK1(1)                  <-----------GT1  ---------->DOF2 --------->YAB1   --------->AHL20(1)   atttctactcaattctacgctaagacaccattgatatacaaccctagatcgtcaaagcttctgacaaatcacaacacggaaacaatataattcaattcgc  18106000            <------NtERF2         --------->ATERF1(1)         --------->RAP2.3(1)                  --------->ANAC58         <------NtERF2<------ZmHOX2a(2)--------->At4g35610        <---------ATERF1(1)            <---------At4g35610      <------ZmHOX2a(1)         ------->GAMYB --------->ANAC46      =======================HOX2a_HOX2a      --------->ANAC58 ------->RAV1(1)--------->ARR14(2)     <---------ZAT2          --------->GLK1(2) -->ANAC58 <-----------HVH21   <---------MYB52(2)   ------->PIF5     --------->GLK1(1)          <---- -->ANAC46----------->GT1      --------->MYB46(3)   <-------PIF5 --------->YAB1               ------- ------->ICU4   <---------ARR14(2)     --------->ZAT2   <----------DOF2                    <---------YAB1 -->ANAC58<---------ANAC46 >>>>>>>>>>WRKY63 ---------->DOF2 <---------TOE2(3) <---------------------WRI1   aacaattaggaggcgtcaaatccgatcaagtcaacaaacccagctcaaaagccacgagctttaagaatcagaattcaaacttagaaaaaaactatgaaac  18106100                                <---------ANAC58                            --------->At4g35610                           --------->ARR14(2)                           <---------ARR14(2)           <------ZmHOX2a(1)                           --------->ARR11(3)        <------NtERF2                         <---------YAB1             <------NtERF2                       --------->YAB1               --------->LBD16                      --------->ICU4           --------->DEAR3(1)                --------->ARR14(2)            --------->At4g35610                --------->GLK1(2)<---------SPL7--------->MYB46(3)                <---------ARR14(2) --------->SPL7 --------->SPL7                            ---------             --------->ANAC58------>ZmHOX2a(2)<---------At4g35610                  ----------->RAV1(1)             --------->ANAC58==================================HOX2a_HOX2a      --------->RAP2.6(2)         --------->CCA1(2) <---------ARR11(3) --------->DEAR3(2)       ---------->DOF2    --------->YAB1 -----MYB52(2) <---------GLK1(2)<---------ANAC58<---------SPL7     --------->At5g28300   <---------ATHB12 >TEIL  <----------ID1<---------YAB1         --------->MYB52(1)   ----------->GT1 <------NtERF2  <---   tgaccagagagagacaagaatctgatgatgatctgcgtccgaaaactcaccggccggaggagtctcttcggtaaaaaggaagtcgccacaaatcaaaaga  18106200                                                           --------->ICU4                                                         ----------------->AGL1                                                         <-----------------AGL1                                                   <---------ICU4  <---------ZAT14                                  --------->YAB1                           <--------  --------->ARR14(2)       --------->AHL20(2)      -------->HAHB4                    --------->TOE2(3)  --------->ZAT14          <---------AHL20(2)     <---------YAB1            --------->AHL20(2)      <  <---------ARR14(2)<------ZmHOX2a(1)             --------->ICU4            <---------AHL20(2)  <---- ->DOF2*TSS     ---------->DOF2                   <---------ATHB51    ----------->GT1<---------MYB59< ------ANAC46   --------->MYB52(1)              --------->YAB1  --------->MYB59   <-----------GT1  <-   cgggtatactcttagtactaaaggaccatttaaatatgggcttatttagataataatgggccttattaggcccagtaatttataaaaccttactagggtt  18106300                                                              ------>ZmHOX2a(1)                                                          --------->ARR14(2)     <-------TEIL                                         --------->ARR11(3)               <---------TOE2(3) -TOE2(3)                               <<<<<<<<<TBF1     <---------ARR14(2)               --------->MYB59 ---------TOE1(3)                  <---------GLK1(2)      <---------ARR11(3)            <----------DOF2 ------DOF2                       <---------ZAT2         --------->GLK1(1)     <---------ANAC46 ---------TOE2(3)                 --------->At4g35610    <---------GLK1(1)   <-----------HVH21    <-- ----------GT1 *TSS<----------DOF2<---------At4g35610  --------->YAB1       --------->ANAC46---------   ttaacgatacgttctcgttctctttctctgaaactcagcttcttcttcagacaccattgatatcctctaaattgttccccgtcgtagaaactttaggtaa  18106400          <---------ZAT2                                                           --------->GLK1(2)          --------->At4g35610                                                     --------->ARR14(2)          <---------At4g35610                                                     <---------GLK1(2)          --------->ZAT2                                                          <---------ARR14(2)      <------NtERF2              --------->TOE2(3)                             --------->HSFB2a(2)     ------>NtERF2               --------->TOE1(3)                             --------->ANAC46     <---------RAP2.6(3)      --------->GLK1(1)                               --------->LBD16    <---------ANAC46          <---------GLK1(1)                               <---------LBD16 -------ICU4            <---------ANAC46              ---------->DOF2  <---------ANAC58            << >ANAC55(2)          ----------->HVH21             ----------->GT1     <---------ANAC58       -------   tcgttgccgtcgagctgatatttgtgaaggggaaaccctaattcgataagggattgtaaagttgcacaagtttgcttatccccagaacctgctctgcaac  18106500                                                              --------->GLK1(1)                                                              <---------GLK1(1)            ---------->DOF2                                  <---------ARR11(3)       <----------ID1                                 --------->ANAC58       ----------->GT1                                --------->ANAC58                     <---------WOX13(1)      ----------->GT1                      <----------ID1    --------->ARR11(3)     ------>NtERF2 <<<<<<<<<<<<<<<LFY    <----------DOF2  ---------->DOF2  ---------->DOF2           --------->DEAR3(1) ---->RAV1(1)--------->DAG2      <---------REM1(1)    --------->ANAC46     --------->AtMYB61    -----   acaacaatggggaaaaaaggagggactttgaagagaagtagcaaaagcacaaaaactcgcaaagatatcgtcgaagaccaatacgacgacgagattgacg  18106600                                                             <---------ICU4                                                             --------->ATHB12                                                            --------->ICU4                                                            <---------YAB1                   <-------                                                         <---------AHL20(2)        --------->ICU4                                                        <---------WOX13(1)      --------->ICU4              ------>MYB46(1)       <----------DOF2--------->TOE1(3)            <---------YAB1              ------>MYB83      <----------DOF2---------->DOF2                  ------>ZmHOX2a(1)             <---------ALFIN1---------->ID1   ------>ZmHOX2a(1)              ---------->ID1  <------- ->NtERF2   --------->MYB46(3)  ------>ZmHOX2a(1)  --------->TOE2(3) --------->ICU4<---------YAB1   cctgtaaacttctacccacttcgaaaaatttgtcctttcttttgtttcctaaagcttaattgattattggaatgactatgtccttattattaagtgctta  18106700  Previous    Next  AGI:  At2g43640.1    Description:  signal recognition particle 14 kDa family protein / SRP14 family protein. Identical to Signal recognition particle 14 kDa protein (SRP14) [Arabidopsis Thaliana] (GB:O04421;GB:O22839;GB:Q53YG7); similar to unknown [Populus trichocarpa] (GB:ABK93883.1); contains InterPro domain Signal recognition particle, SRP14 subunit; (InterPro:IPR003210); contains InterPro domain Signal recognition particle, SRP9/SRP14 subunit; (InterPro:IPR009018) Range:  from: 18104483    to: 18106207    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43650.1    Description:  EMB2777 (EMBRYO DEFECTIVE 2777). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28230.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46275.1); contains InterPro domain Small-subunit processome, Utp3; (InterPro:IPR007146) Range:  from: 18106315    to: 18110422    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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