Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->YAB1                                                             <---------ATHB12                                                            ------>MYB46(1)                                                            ------>MYB83                                                           --------->WOX13(1)                  --------->AHL20(2)                     <---------MYB55(2)                  <---------AHL20(2)                     --------->MYB46(3)                        <-             --------->YAB1                              <---------ATHB12                         <--       --------->TOE2(3)                                -------->P                           --------     --------->ICU4--------->WOX13(1)                   ------>MYB46(1)                <---------ARR14(2)     <---------ATHB12     --------->YAB1                --------->ANAC58     <---------YAB1  <------- <------NtERF2   --------->AHL20(2)              --------->YAB1            <---------ANAC55(2)    --- <---------At4g35610   --------->WOX13(1)        <---------ICU4   ----------->GT1  --------->At4g35610 --------->At4g35610 <---------ATHB12           <---------ATHB12---------->DOF2    <---------At4g35610 --ANAC58 --------->YAB1 <---------ATHB12   <-------TEIL--------->ANAC58   --------->ANAC55(2)  ----- --ANAC58 --------->WOX13(1)    --------->AHL20(2)      ------>MYB83  --------->WOX13(1)     --------   ggctgcaaacattaatcaaattaatcaatcaaaattcaatacaagattcaataatcccaaccaatcaaaagttaatcacatgataagcagacacgagctc  18054100                                                                 <-----------GT1                                                             <-------MYC3                                                             ------->MYC3                          -- --------ALFIN1                                             --------->ANAC46    ---------->DOF2------ -------At4g35610                                         <---------ALFIN1 <---------------AGL15  --- ->ZAT2                       <---------TOE2(2)          <---------REM1(2) ------>ZmHOX2a(1)   <----- --ZAT2        --------->ANAC58                          ------>MYB83  <---------ARR11(3)--------->ANAC58 ------>At4g35610       ----------->HVH21                -------->P   <---------CCA1(2)  --------->ANAC58 ----->CDC5    --------->ANAC58       ----------->GT1    ------>MYB46(1)  --------->TOE1(3)   ------- ->At4g35610 ---------->DOF2  <---------TOE1(2)        --------->AtMYB61  --------->TOE2(3)   <------   agcacatcaaacacattaagcaaactctgacctaggtttttggttaattcactaaaacctacacgtttcactatatcctaaacaaagtaagaagcaataa  18054200                                                                                <---------WOX13(1)                                                                              --------->ATHB12                                                                              <---------ICU4                                                                             <---------YAB1  <---------At4g35610                                              <---------ZAT18  --------->At4g35610                                              --------->ZAT14 -------->DOF2                                              --------->AGP1   --------->ICU4 --->YAB1                                                  --------->At4g35610<--------ATHB1 ------>YAB1                                          <------ZmHOX2a(1)  <---------YAB1 ----ICU4           <---------ARR11(3)            <-------TEIL   --------->ANAC46                  >> -->ICU4            --------->GLK1(2)            --------->CCA1(2) <---------ZAT14             ------ ---ATHB12          --------->ARR11(3)          --------->ARR11(3) --------->ZAT18            <------   tcaaagctgaaaatgatacaaaaatctacattttttgagaaaactcttaagatacaggaacagctctactacactatgaatgattgcaaacgagctatga  18054300                                                                                                -----                                                                                                <----                                                                                               ------                                                                                              -------                                                                                              <------NtERF2                                                                                              -------                                                                                <-------GAMYB------>NtERF2                                                                                <---------ANAC46-----                                                                               --------->MYB55(2)  --                                                                               <---------MYB46(3) ---                                                                               <------MYB46(1)-------                                                                              <---------AtMYB61------                       <------NtERF2                                         <---------MYB52(1)------                      ------>NtERF2                                     ------->TEIL         <-------                      <---------RAP2.3(1)                               <---------ARR14(2)  ---------                     <---------DEAR3(1)                                 --------->ARR14(2)  ---------                     <---------ANAC46                                   --------->GLK1(2)   ---------      --------->YAB1--------->RAP2.6(3)                                 <---------ARR11(1)  ---------     <---------ATHB12<---------RAP2.3(3)                               <---------CCA1(2)   --------->RAP2.3(1)   ------>MYB83    --------->MYB52(1)                               --------->HSFB2a(2)    --------->DEAR3(2)   ------>MYB46(1)----------->TGA1--------->ANAC58                  <---------HSFB2a(2)    --------->MYB46(3) >>>>>>>MYB2      ----------->HVH21       ---------->DOF2   <-----------GT1<-----------RAV1(1)------- --->YAB1 --------->ANAC58        --------->ANAC58       <---------------AtSPL8<------MYB83--------->ERF1 ---YAB1  --------->ANAC58 --------->CCA1(2)             --------------->AtSPL8--------->MYB52(2) <--   aaaccaaatcataagcatccatgacggcgatatgaaacgaaatcgaaagaccgagaaatattgtaccattctcgaatctgttggttgaaactagccgccg  18054400 ---->ORA47(1) -----SPL7 --->RAP2.6(2) -->DEAR4(2)                       --------->CCA1(2) -->RAP2.3(1)                     <---------ARR14(2) ->NtERF2                         --------->ARR14(2) --------->RAV1(1)               ===================HOX2a_HOX2a ------>ETT(2)                   <------ZmHOX2a(1) -->ATERF1(1)                    ====================HOX2a_HOX2a --->RAP2.3(2)               <---------ANAC46 ------>ZmHOX2a(2) --->DEAR3(1)             <------NtERF2      <---------GLK1(1) --ATERF1(1)             ------>NtERF2       --------->GLK1(1) >DEAR3(1)               <---------ATERF1(1) <------ZmHOX2a(2) >ANAC46                 <-----------HVH21  <---------ARR11(3) >RAP2.6(2)             <---------DEAR3(1)  --------->ARR11(3) >RAP2.3(2)             --------->DEAR3(1) <---------GLK1(1)                                      <-- -->ORA47(2)      --------->ARR14(2)       --------->GLK1(1)                          --------->TOE1(3) -------ETT(2)    <---------ARR14(2)  ---------->DOF2                         *TSS    --------->TOE2(3)   tccacagagagagtcgagcgaattcgccgtcgcgaggatataaagagatctcttaaaaactttgtatcaagaagccctaattcgtaaacctgaaattcca  18054500                                             --------->YAB1        --------->HSFB2a(2)                 <---------ATHB12        <---------HSFB2a(2)        ---------->DOF2                                            -------  <---------At5g28300           <----------DOF2        <----------DOF2                    <---------MYB52(1) <-----------GT1       ------------>CBF ------------>CBF                              <---------At5g28300 -------ICU4          <<<<<<<<<<<<<<<<<LFY--------->WOX13(1)       <---------REM1(2) <-----------GT1-   tatttaccctctggacgatttatcaaacaatgggctttaaggcccaatcatatatcgctttaatgtcccttcacagttttgcccaatttacagtttgtct  18054600                                                         <---------ARR11(3)                                                        XXXXXXXXXXXXXXXXXXX>MIR866-3P                                                   ----------->RAV1(1)                                              <------ZmHOX2a(2)                                              ======================HOX2a_HOX2a                                             --------->ARR11(3)                                             <---------ARR11(3)                                   <---------ATHB12--------->TOE2(3)                         <-------                     <----------DOF2--------->YAB1 ------->GAMYB             <---------AHL20(2)   <----------DOF2<-----------GT1  <---------YAB1-------->P  ------>ZmHOX2a(1)         <---------AHL20(2) --->ID1   ------>ZmHOX2a(1)  --------->TOE2(3) --------->WOX13(1)           --------->AHL20(2)    -- -------->ZAT6    <---------AHL20(2)<---------ICU4--------->MYB46(3)        --------->AHL20(2)     --   taacactttggtcctcatattttcttttcataccctaatcataacaagatcaaccacaaaatccttcttagaaaaaaaaaaaatttgattttttttgtca  18054700                                                                                                    <                                                                                                   <-         ----------->GT1                                                                          ---  ---------->DOF2                                                          ---------->DOF2      <---- ----HVH21                                                         ---------->DOF2     --------->ARR11(3) ------->ANAC58       --------->ZAT6                           --------->ZAT18         <---------ARR11(3) ------->ANAC58     <-----------GT1    --------->MYB52(1) ---------->DOF2 ------>ZmHOX2a(1)   <------   caagaaaagaagcgttacaaatttacacttgttgaaagaaaaaacgattcaactacaagagaaagttcacaaagtcctaaagacacagagatgtttacag  18054800                           ----------->HVH21                         <---------ANAC58                                   --------->YAB1                 --------->ANAC58                               --------->At4g35610   ----------->RAV1(1) ---------RAP2.6(2)      <---------ANAC58             --------->GLK1(1)   --------->AHL20(2) ------TEIL      --------->ANAC58------>MYB46(1)   --------->ANAC58      --------->AHL20(2) ------>ALFIN1   --------->ANAC46------>MYB83      --------->ANAC58      --------->YAB1 -----At4g35610--------->HSFB2a(2)      --------->AtLEC2     <---------ATHB12 --------->AHL20(2) -----RAV1(2)  <---------HSFB2a(2)  ------>ZmHOX2a(1) <---------GLK1(1) <---------ATHB12            <   gtgcggtcttaatgcttccaggccatggagtgaccatcctccatgtaaggctcaagaaatccaatgaactgccaataaaaataaacagcaacaaaacaat  18054900                     --------->CCA1(2)                ---------->DOF2          --------->bZIP60(2)          --------->TGA1a          <---------O2          --------->ANAC58                                                <-------MYC3          --------->ANAC58                                                ------->MYC2          =================bZIP_DOF                                       <-------MYC2          <---------TGA1a                                                 ------->MYC3          <---------ANAC55(2)                                           ------>MYB83          --------->O2<-------TEIL                    <---------MYB46(3)------>MYB46(1)         <-----------------------TaNAC69(2)        <----------DOF2     --------->MYB52(1)          <- ---------YAB1----------->HVH21              <-------TEIL             --------->AtMYB61    <---------At4g35610   tgatgatcagacacgtctgaaagatacatacttcaagtctcaaaatatacatactttggttccatctcgagaccaacgtgctccatagccttgagctact  18055000  Previous    Next  AGI:  At2g43460.1    Description:  60S ribosomal protein L38 (RPL38A). Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38B) [Arabidopsis thaliana] (TAIR:AT3G59540.1); similar to unknown [Populus trichocarpa] (GB:ABK92931.1); contains InterPro domain Ribosomal protein L38e; (InterPro:IPR002675) Range:  from: 18053081    to: 18054478    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43470.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46227.1); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain ProFAR isomerase-like (InterPro:IPR010759) Range:  from: 18054670    to: 18058295    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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