Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>ZmHOX2a(2)           --------->YAB1         --------->ARR11(3)         <---------ARR11(3)    --------->ARR14(2)    <---------ARR14(2) <---------ANAC58 <---------ANAC58 <---------ANAC46 ---------TOE1(2)                                                            ------->MYC3 --------ANAC46                                                   <---------At4g35610 ------ANAC58                                                     --------->At4g35610          ------ ------ANAC58                                                ----------->HVH21     <---------ZAT14--- ------MYB46(3)                                             <------NtERF2 <---------ALFIN1     ------ ------HVH21                    --------->ARR14(2)        <---------DEAR3(1) <-------MYC3      ------ ----MYB52(1)              --------->AtLEC2          <----------DOF2    ------>ZmHOX2a(1)  <---------AHL20(2)   cgtgcgtattcgatcttaatttgacttccattcaaatttgctccttgaagagcctctttggctgcgactgcttcctccacatgtctgtagtatataaacg  18037900                                                                            <---------ANAC58                                                                          <-----------HVH21                                                                         <-----------RAV1(1)                                                                   ----------->HVH21                                                                 --------->CCA1(2)              -----                                                                 <------ZmHOX2a(2)              -----                                                                <---------ARR11(3)              -----                                                                --------->ARR14(2)              <----                                          <---------ARR14(2)    <---------ARR14(2)             ------                                          <---------ARR11(1)    --------->AGP1         <---------MYB52(1)     --------->O2                         <---------ARR11(3)    --------->ARR11(3) ------>NtERF2<----     <---------O2                         --------->ARR14(2)    <---------AGP1--------->ATERF1(1)     <---------ANAC46                     <-----------ARR10     <-----------ARR10 --------->ANAC46--- --->ANAC46                   --------->YAB1      --------->ANAC46------>ZmHOX2a(2)--------->LBD16--- ------->DOF2        <---------MYB52(1)   ------->TEIL         <---------CCA1(2)  <---------DEAR3(1) --->ANAC58         --------->At5g28300  <---------CCA1(2)    ----------->ARR10  <---------LBD16<---- --->ANAC58      <---------At5g28300     <---------ARR14(1)<-----------HVH21<---------ANAC58  -------   caaagcctcgtgaagaatacaccgtgattctatcaatatcgccgtatcttccaaacaactcggtcagatctgactctgtcgtctccggcgttaggctacc  18038000                                                                                             <------ZmHOX2a(2)                                                                                            ---------                                                                                            ------->TEIL      <---------GLK1(2)                                                                     <--------    <---------ATHB12                                                                   =============HOX2a_HOX2a ---->DEAR3(1)                                                                         ------>ZmHOX2a(1) -->GAMYB                                                                              ==============HOX2a_HOX2a ---->MYB46(3)                                                                      <<<<<<<<<ARR2 -----MYB111(1)              --------->ATHB12            --------->ANAC58           <------ZmHOX2a(2) --->DEAR3(2)                --------->YAB1              --------->ANAC58           <<<<<<<<<ARR1 -----MYB59                 <---------HSFC1(2)         --------->MYB52(1)          <---------ARR11(3) --->MYB83                  <---------HSFB2a(1)        <---------DOF5.7(2)         <---------ARR14(2) --->MYB46(1)           --------->LBD16      <---------ANAC58                      --------->ARR14(2) -----MYB46(2)        <---------LBD16        <---------ANAC58                   <---------TOE2(3) -->MYB52(1) <---------WRKY18(1)        <---------AtLEC2 --------->ANAC46      <-----------GT1------>ZmHOX2a(2)   gacccaaagattgtttgactggaaaccggaatcatcggctctgaatggcttcatagataacgccatcgggattgtttcaattgacgatcctatggatcca  18038100                                                           --------->MYB52(1)                                                          ----------->HVH21                                                          ----------->TGA1                                                         <-----------HVH21                                                         ------->MYC2                                                         ------->PIF5                                                         <-------MYC2                                                         ------->MYC3                                                         <-------PIF5                                                         <-------MYC3                                                        --------->O2                                                        --------->ANAC55(2)                                                        --------->ANAC46                                                        <---------O2                                                        --------->TGA1a                        <-----------GT1       <---------YAB1                  <---------WOX13(1)      --------->ARR11(3) <---------ANAC46         --------->HSFB2a(2)          <---------YAB1    --------->bZIP60(2)                    ------         <---------HSFB2a(2)<----------DOF2--------->GLK1(1) <---------ANAC55(2)       <---------YAB1 >ARR14(2)      --------->ATHB12   --------->ICU4       <---------TGA1a  --------->CCA1(2) <-------TEIL -ARR14(2)--------->LBD16   ======================================bZIP_DOF             ----------->ARR10   aaattccaatcccagaattgattgttttacctttgggattatgagatttcgattatccacgtgacggaaaacgagagacgaattgtgcgatgatacgttg  18038200                                       ------>MYB46(1)                                       ------>MYB83                                       -------->P                                  <---------ARR11(3) --------->ANAC58       <---------ANAC46           <------ZmHOX2a(1) --------->ANAC58       <---------ANAC58   ------>MYB46(1) ----------->GT1        <---------ANAC58   ------>MYB83 --->WRKY38(1)      --------->CCA1(2) ------>ZmHOX2a(1)   agcaagaaaaattcgatgagagatttgggtgttcaaaatcctacctacagagaggagaagagaaccctagattgagtttgaagacgaagaagattagatt  18038300                                          <---------TOE2(3)                                        ---------->DOF2                                     <-----------TBP                                    <----------DOF2                                   <---------ANAC46                                  <------NtERF2                                 <---------RAP2.3(1)                                <---------ANAC46                                <---------RAP2.6(2)                                <---------RAP2.3(2)                                --------->DEAR3(1)                                <---------DEAR3(1)                               --------->DEAR4(2)                               --------->ATERF1(1)                               <------NtERF2<------ZmHOX2a(1)                               --------->RAP2.3(1)              <----------DOF2                              <---------RAP2.3(1)          <----------DOF2                              <---------DEAR4(2)       <---------ARR14(2)                              <---------ATERF1(1)      --------->ARR14(2)                        ----                             <---------DEAR3(1)       <------ZmHOX2a(1)  <----------DOF2     <------ZmHOX2a(2)              <-----------RAV1(2)------>NtERF2      <---------TOE1(3)  ---------->ID1     --------->LBD16    ---------->DOF2 *TSS     <---------RAP2.3(2)    <---------TOE2(3) <-----------GT1   <---------LBD16   gtgagagaaagagaggccagggaatatcgaagcggcggcttttaaaggatatataaggatactttccttttttttcttttttttttggaaaccggatcaa  18038400                                        --------->YAB1                              ----------->GT1         <---------YAB1      <-------TEIL   --------->GLK1(1)                         <---------YAB1   --------->ABI4(2)       --------->ARR14(2)                              ------>ZmHOX2a(1)   <-------TEIL            <---------ARR14(2)<-----------GT1               <---------YAB1   <---------ZAT18 <---------ICU4    --------->YAB1             <---------YAB1        --------->ICU4 ----->MYB52(1)   --------->ICU4    <---------AHL20(2)          --------->ICU4   --------->YAB1   aacggtgcattttgatagtagttatggcaaattcgtaaataatcatatatccatcccctctcagtgaagattacatcctgatagcataatgtttgtacat  18038500                                              <---------ANAC46   <-----------HVH21                                   <------MYB46(1)             --------->HSFC1(2)                                   <------MYB83                <---------HSFC1(2)                                  <---------AtMYB61     <----------DOF2   ------->TEIL                               <-----------RAV1(1)      --------------------->WRI1                               <---------MYB46(3)    <------ZmHOX2a(1)    <---------YAB1                 --------->ICU4<XXXXXXXXXXXXXXXXXXXXMIR827     --------->At4g35610            -------         <---------ICU4 <---------LBD16    <---------MYB52(1)  <---------HSFB2a(1)     <---------REM1(1)   aagacatctaataactgcaattagtctctgggattgttggtgttcgtttagtggaggactttggaagcttcacatgaacattggtttagatgaagcatca  18038600                                                          <---------MYB46(3)                                                         --------->ALFIN1                                                       <------MYB83                                                       <------MYB46(1)                                                     <-----------RAV1(2)                                                 --------->LBD16                                                <---------LBD16                                               <---------LBD16                                             --------->ARR11(3)                                             <---------ARR14(2)                                             --------->ARR14(2)                                            --------->GLK1(1)                                            <---------HSFB2a(1)                    --------->YAB1          <----------TaMYB80                  --------->AHL20(2)        <---------KAN4(1)                <----------DOF2             <---------GLK1(1)                   <---------ANAC58                ------>ZmHOX2a(1)           --------->HSFB2a(1)                 <---------ANAC58             ------>MYB46(1)                --------->KAN4(1)                   <---------ANAC46   --        <-----------GT1<---------AHL20(2)  ---------->TaMYB80   --------->At4g35610               --- -->At4g35610------>MYB83<---------TOE2(3) <---------KAN4(2)    <---------At4g35610            ------   gaaacaggtatcaccatccttttaataaatgttaagcattcgacgaatatccgggctaggtggtagagctcaagctcgtattgctcgtagatgaagaaac  18038700                         --------->AtLEC2                         --------->ANAC58                         --------->ANAC46                         --------->ANAC58           ----------->RAV1(1)                                        --------->ICU4       --------->ICU4          --------->ANAC58                                            <---------YAB1       <---------YAB1          --------->ANAC58  ---------->DOF2                         --------->YAB1       <---------ICU4     --------->YAB1------->GAMYB                             ----------->GT1             --------->YAB1 ------->At5g28300<------------AtMYB77               ---------->DOF2<---------ICU4----------->GT1   < ------>LBD16   --------->MYB52(1)              <---------TOE2(3)  <---------ATHB12     <---------ATHB12 --->MYB52(1) <---------MYB59                   <---------TOE1(3)--------->WOX13(1)   --------->WOX13(1)   cggtgaatgagaacgacataactgtccaagcaaagcgtagagaaaatgttatggataaagaagttgttaatcatgtttatgaagttgttaatcatgttta  18038800  Previous    Next  AGI:  At2g43410.1    Description:  FPA; RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G12640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16948.1); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18032324    to: 18038320    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43420.1    Description:  3-beta hydroxysteroid dehydrogenase/isomerase family protein. similar to AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2), 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT2G26260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16949.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Reticulon; (InterPro:IPR003388) Range:  from: 18038345    to: 18042175    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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