Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     ---------->DOF2                                ----------->RAV1(1)                               <----------ID1                                             --------->At5g28300                             <<<<<<<ZML2                                                 ----------->GT1                        --------->STY1(2)                                               ----------->GT1 -----DOF2              <---------STY1(2)                                          >>>>>>>>>TBF1<----   tctacttcaaatttgtgatttagagtagctagaacaacaaagagaagagtaagtgagagagagagagagagagagagagagagaagaagaagggtaaatt  18020000                                                                           <---------HSFB2a(1)                                                                           --------->HSFB2a(1)                                                                           <---------HSFC1(2)       =                                                                      <---------HSFB2a(2)           <                                                                      --------->HSFB2a(2)         <--                                                                     <---------LBD16            -----                                                                     <---------ANAC46           -----                               --------->YAB1                      <---------ARR14(2)      ------>ZmHOX2a(1)               --------->WRKY18(1)                                 --------->ARR14(2)    <---------ZAT18   --------->AtLEC2      <------ZmHOX2a(1)                     <---------ATHB12   <---------YAB1<---- -------GT1<------ZmHOX2a(1) --------->GLK1(2)           --------->ANAC46  --------->HSFC1(2)   <----   actccatggaagaggaggtcaagaagaggagaatcataaacagacttgatttcatctctactccaatcgtttctgggaccttctctgatagtcctctcag  18020100           --------->At4g35610    ----------->HVH21  --------->At4g35610  <---------At4g35610  <---------ZAT2  ----------->RAV1(2)  ====================RAV  --------->ZAT2                                      ----------->HVH21 =====================RAV                            --------->LBD16        <------ZmHOX2a(2) -----------RAV1(2)                                 --------->ANAC46 <---------ZAT2                 - ---------HVH21                                   ------>MYB46(1)    --------->At4g35610         ---- ---->At4g35610                                   ------>MYB83       <---------At4g35610       ------ ---->ZAT2 <---------At4g35610                  --------->AtMYB61    --------->ZAT2            ------ -----ZAT2----------->RAV1(1)                   <---------ALFIN1 --------->ANAC58              ------ -----At4g35610--------->ARR11(3)              --------->MYB46(3)--------->ANAC58       <------ZmHOX2a(2)   cttcagctgaagcagcagataatgaagaatagcaagaagcagattgcagaccacccgagacagagggtcgcaactgagatcgaaatacagatcgaacaag  18020200                                                                <------MYB46(1)        ------>ZmHOX2a(2)                                   <---------MYB46(3)       <---------At4g35610                               <------MYB83 -------->ATHB12                                         <------MYB46(1)                 --------->ZAT14 ----->YAB1                                >>>>>>>>>TBF1<---------AtMYB61                <---------ZAT14 --->ANAC58                             >>>>>>>>>TBF1 --------->CCA1(2)            <-----------GT1 --->ANAC46                          >>>>>>>>>TBF1 ----------->ARR10           <----------DOF2 --->ANAC58     --------->YAB1---------->DOF2  --------->CCA1(2)<------MYB83<---------ARR11(3)   catcatttgatctgctaatcagaaaatgtggaaaaagaagaagaagaagaaatgagatttggtgtttggtttgtgctagagcttttcactcttcagtgag  18020300                     ------>NtERF2                   <---------ABI4(2)                   <---------MYB55(2)                  --------->At4g35610                  <---------ATERF1(1)               *TSS--------->MYB46(3)            ---------->DOF2        >>>>>>>>>MYB98       ------>MYB83--------->ATERF1(1)       ------>MYB46(1)       --------->MYB52(1)                       <---------PCF2      --------->MYB55(1)                        --------->TCP15(1)     <---------MYB52(2)           <---------LBD16      --------->HSFB2a(2)     <---------MYB46(2)         <---------ARR14(2)   ------>MYB46(1)     <---------MYB111(2)        --------->ARR14(2)   ------>MYB83      --------->TOE2(3)     --------->AtMYB61<------NtERF2      <---------ANAC46              <----------DOF2     <---------MYB59<---------ALFIN1------>NtERF2--------->PCF2    <---------CCA1(2)              ---     <---------MYB111(1) <---------MYB52(1)  --------->ALFIN1 <---------YAB1         --------->YAB1    --------->ANAC46--------->DEAR3(1)   <---------ANAC58    --------->ARR11(3)    --------->At5g28300    --------->ANAC55(2) --------------------->WRI1 --------->TOE2(2)<---------ARR11(3)          <----    <---------At4g35610 <-------GAMYB    <---------ANAC58    <---------ARR11(3)   ----------->GT1 <--  <-----------GT1--------->RAP2.6(2)--------->LBD16--------->TOE1(2)--------->ARR11(3)      ---------   tgattcacctaacccaaagcagccaccgttggagtttccgccttcgtgtgggacctacgagaatatcatatatctttaactgggctgtaataagcccaat  18020400                                                                            ----------->HVH21                                                                           <-----------HVH21                                                                           --------->LBD16                                                                          <---------TGA1a                                                                          <---------ANAC46                                                                          --------->O2                                                                          <---------O2                                                                          --------->TGA1a                                                                       --------->RAP2.6(2)                                                                       --------->RAP2.3(2)                                                                       --------->DEAR3(1)                                                                       --------->RRTF1(3)                                                                       --------->RAP2.3(3)                                                                      --------->ORA47(2)                                                                      --------->DEAR3(2)                                                                      --------->RAP2.6(1)                                                                      --------->RAP2.3(1)                                                                      --------->ERF1                                                                      --------->DEAR4(2)                                                                      --------->MYB46(3)                                                                      <------NtERF2                                                                      --------->ATERF1(1)                                                                      <---------ABI4(2)                                                                      --------->RRTF1(1)                                                                     --------->ZAT2                                                                     --------->At4g35610                                                                     --------->ABI4(2)                                                                     <---------ATERF1(1)                                                                     <---------At4g35610                                                                     ------>NtERF2                                                                     <---------RAP2.3(1)                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                   <------NtERF2                                                                   --------->ATERF1(1)                                                                  --------->LBD16                        <---------ICU4         <----------DOF2    <---------ATERF1(1)              <---------AHL20(2)               =====================================bZIP_DOF  <-----------RAV1(1)  ------------>CBF        *TSS     ------>ZmHOX2a(1)<------NtERF2       <------NtERF2 ------>AHL20(2)       <---------ATHB12     <---------YAB1      <---------LBD16             <-------- -------TBP  --------->AHL20(2)          <---------MYB52(1)  --------->MYB46(3)            <---------ANAC46 -------AHL20(2)  --------->YAB1     ------>NtERF2     --------->TOE1(3)------>NtERF2     --------->ALFIN1 --->CBF  <----------DOF2           --------->DEAR3(1) --------->TOE2(3)<---------RAP2.6(3)<---------DEAR3(1)   ttatatgttgggctttttaatagtaatcaattcaaacgacgacgttattctttatttccttaaacagccggagccgccgtgagagagagagagtcggggg  18020500                                                   <-----------HVH21                                                  --------->DEAR3(1)                                                  <---------bZIP60(1)                 <------ZmHOX2a(1)                --------->O2              <------NtERF2                       --------->bZIP60(2)            <---------ANAC46                      <---------bZIP60(2)                        <-------            --------->ALFIN1                      --------->bZIP60(1)               --------->ANAC58            <---------DEAR3(1)                    <---------TGA1a                   --------->ANAC58           <------NtERF2                          <---------O2                      --------->ANAC46           --------->ATERF1(1)                 --------->ANAC46                    <---------LBD16           <---------LBD16                     ----------->HVH21                 --------->ETT(2)          <---------RAP2.3(1)                --------->ANAC46                --------->HSFC1(2)         <---------RAP2.3(2)           --------->ZAT18 <---------CCA1(2)     <---------HSFC1(2)         <---------DEAR3(1)       ==========================bZIP_DOF      <------NtERF2      <-------        --------->At4g35610       ---------->DOF2 --------->TGA1a        --------->LBD16    <--------   --------->CCA1(2)  --------->MYB52(1)     --------->ANAC58          <---------LBD16 <---------ARR14(2) -LBD16 <---------At4g35610<---------ANAC46  --------->ANAC58        --------->ANAC46  --------->ARR14(2)   agaagaaatgagcggcggaggaaacaacgtcgtgaacaaagtgttctacgcgacgtcgtatcatccgattcaagccggaagtatcgacggaactgatgtt  18020600                <------NtERF2               ------>NtERF2               <---------SPL7               <-----------HVH21              --------->DEAR3(1)              <---------ANAC58                                                             <---------DAG2      --------->YAB1                                      --------->ARR14(2)               <---------     <---------YAB1                            <---------ANAC58                         <-----------GT1 <---------ALFIN1--------->SPL7                <---------ANAC58                     <----------DOF2 ----RAV1(1)  <---------ANAC58                 <---------ANAC46                   ------>ZmHOX2a(1) --REM1(1)  ------->GAMYB<---------ARR11(3)  ------>NtERF2--------->ZAT14    <---------At4g35610 -TOE2(3)--------->MYB52(1)         --------->YAB1    ------->TEIL           --------->At4g35610   <-   gctccacatgataacggcgtccgtcgagctcttctctgttataacgctggcttatgtatgtatactctctcgttctctctgctcctcttttcacttttat  18020700                                                                                      <---------ZAT18                                                                                      --------->ZAT14                                                                                      <---------ZAT14                                                                                 ------>ZmHOX2a(1)                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             <---------ARR14(3)                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(3)                                                          <---------MYB46(3)<---------GLK1(1)                                                   ------>ZmHOX2a(1)        --------->GLK1(1)  <------MYB46(1)                                  ===================================HOX2a_HOX2a  <------MYB83                   <---------MYB46(3)==================================HOX2a_HOX2a   <- <---------AtMYB61              <--------P       ------>ZmHOX2a(2)    <-------GAMYB --------------->AtSPL8 -DOF2                  --------->ATHB12       --------->ARR11(3)    <-----------RAV1(1)        <---- --------MYB52(1)  <-------TEIL<-------GAMYB   <---------ARR11(3)    <---------MYB46(3) --------->ZAT14   cgtttggtttctgaattcaaatacattgatttgggttgttttgaaagatgatccttctggtgattcgaaggctgttggagatccttactgtactctcttc  18020800                                                  <---------WOX13(1)                                                <--------ATHB1                                                -------->HAHB4                              <-------TEIL      --------->ATHB12                             --------->CCA1(2)  <---------ICU4                            <---------ARR14(2) <---------YAB1                     <---------LBD16           <---------ATHB12                    --------->MYB52(1)   ----------->GT1                 --------->ZAT6      <---------HSFB2a(2)                        --------->REM1(2)     <---------CCA1(2)      --------->ARR14(2) --------->ICU4                <---------ANAC46 --------MYB46(3)--------->ANAC46    --------->HSFB2a(2)                     <---------ANAC58 -----ANAC46--------->YAB1 <------ZmHOX2a(1)  <---------TOE2(3)              <---------ANAC58      <-   gtgggtcgtctctctcatcacactacggaggatacacttcgagaggttaatgattgaaatttcacttagtttttgattttcgtgtagactatgttttgaa  18020900  Previous    Next  AGI:  At2g43360.1    Description:  BIO2 (BIOTIN AUXOTROPH 2); biotin synthase. Identical to Biotin synthase (BIO2) [Arabidopsis Thaliana] (GB:P54967); similar to biotin synthase [Brassica rapa subsp. pekinensis] (GB:ABI63585.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Biotin synthase; (InterPro:IPR002684); contains InterPro domain Biotin and thiamin synthesis associated; (InterPro:IPR010722); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 18017828    to: 18020315    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43370.1    Description:  U1 small nuclear ribonucleoprotein 70 kDa, putative. similar to U1-70K (SPLICEOSOMAL PROTEIN U1A), RNA binding [Arabidopsis thaliana] (TAIR:AT3G50670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64769.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18020447    to: 18022531    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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