Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <------NtERF2                                                                         <---------RAP2.6(3)                                                                         --------->LBD16                                                              <---------TOE2(3)                                                              <---------TOE1(3)                                                              <---------YAB1                               <---------YAB1              <---------MYB52(1)                           <---------GLK1(2)               <---------ARR14(2)                      --------->MYB52(1)           --------->ARR14(2)  <---------LBD16         <-----                  --------->DAG2       <-----------GT1     --------->ARR14(2)                  <-----                 ---------->DOF2    <---------ICU4 <---------ARR14(2)--------->ANAC46 --------->DEAR3(1)   tggcaaaaatttctacttataaagtaacagattattagttattaccaattctaaatctgcagttatggttcaagccggaagggaatcgccgaagttggct  17991800                                                                                          --------->ARR14(2)                                            <------ZmHOX2a(2)                             <---------ARR14(2)                                           <-----------ARR10                   --------->ATERF1(1)                                           <---------ARR11(3)                  <------NtERF2                                          --------->At4g35610                 <---------ATERF1(1)                                 <---------LBD16                              <-----------HVH21                                <---------LBD16                              <---------ANAC58                               <---------LBD16           --------->ANAC58    <---------ANAC58    ----                              <---------ANAC58           --------->ANAC58    <---------DEAR3(1)  XXXX        <-------TEIL          <---------ANAC58 <---------ALFIN1       <---------ANAC58<---------ZAT18 ----ANAC58              <---------ATHB12 <---------At4g35610         <---------ANAC46<---------ZAT14 ----ANAC58          ------>ZmHOX2a(2) <---------At4g35610            <---------ANAC58--------->ZAT14   agtcgatgggttcaaaacgatgatccaatcttgctcggggaagcagatcacaccttggcaagtcatcgagggtcgtgaggcgtcgcagtgcagatagaca  17991900                                                   <------NtERF2                      --------->At4g35610                                                  --------->At4g35610                 <---------At4g35610                                                  --------->LBD16                     <-------GAMYB                                                  --------->ZAT14                     <------NtERF2                                                  <---------At4g35610                <---------ATERF1(1)                                                  ------>NtERF2                      <---------RAP2.3(1)                                                  <------NtERF2                      <---------ERF1                                                 --------->RRTF1(2)                  <---------MYB46(3)                                                 --------->RRTF1(3)                 <---------ATERF1(2)                                                 ----------->RAV1(1)                <---------DEAR3(1)                                                 --------->DEAR3(1)                 <---------RAP2.3(3)                                                --------->RRTF1(1)                  <---------RAP2.3(2)                                               <---------At4g35610                  --------->ATERF1(2)                                               <---------ATERF1(1)                ------>NtERF2                                  --------->At4g35610                             <---------RAP2.3(1)                                  --------->ZAT2--------->RAP2.3(1)               <---------ATERF1(1)                                  <---------HSFB2a(1)                             --------->LBD16                                  --------->HSFB2a(1)                            <---------DEAR3(1)                                  --------->HSFC1(2)                            <---------LBD16                                  <---------HSFC1(2)--------->DEAR3(1)      --------->GLK1(2)                                  <---------At4g35610                      --------->ARR14(2)                                <------ZmHOX2a(1)--------->RAP2.3(2)       <---------ARR14(2)                               <------MYB46(1) ------>NtERF2               --------->ARR11(3)                               <------MYB83    --------->At4g35610         <---------GLK1(2)                        <---------LBD16        <------NtERF2             <---------TOE2(3)                   --------->At5g28300       --------->SPL7          --------->At4g35610           <-----------HVH21 <--------P    <---------SPL7            --------->ZAT2--------->ATERF1(1)      ---------->ID1----------->HVH21      <-----------HVH21         <---------At4g35610<----------DOF2 ----->GLK1(2)     <-----------HVH21    ------>ZmHOX2a(1)  <-------GAMYB ----------->ARR10 XXXXXXXXXXXXXXXXX>MIR831   <---------MYB52(1)--------->ANAC46    <---------At4g35610------>NtERF2   atctcttcgtccccttcaaaccgtgactcgggtaggagcttcctccgtccgccgcagtcgcagttgtaagcagctaagattctccggcggctgttttgaa  17992000                      ------>MYB46(1)                      -------->P                      ------>MYB83                    <---------MYB111(1)                    <---------MYB59                                         ------>ZmHOX2a(2)                   --------->HSFB2a(1)<---------ZAT18                     <---------ARR14(2)                  ------->TEIL  --------->LBD16                           --------->ARR14(2)                  <-----------ARR10   --------->ZAT18                    <------ZmHOX2a(1)       <---              --------->HSFB2a(2)    ----------->HVH21                 <---------TOE2(3)       <-----              --------->LBD16  <---------LBD16              <---------ARR14(2)           --------->WOX13(1)              ------>NtERF2    <---------HSFB2a(2)          --------->ARR14(2)    <---------ANAC46              <---------HSFB2a(2) <------ZmHOX2a(1)         --------->GLK1(2)     <---------ANAC58  <             --------->ANAC46  --------->HSFB2a(2)         <---------ARR14(2)     <---------ANAC58  -            <---------LBD16    <-----------RAV1(2)         <---------GLK1(2)=========================   gactcatatgcctctccgcgaacctactcgattccaggagtgacctccattgttttgagacgattctgcatttgaggatcgatttcgtgggcaatctaag  17992100                                                                                    <---------ZAT14                                                                                    --------->ZAT18 ---ZmHOX2a(1)               <---------ETT(2)                                       --------->ZAT14 ----TOE2(3)  --------->ZAT2 --------->ETT(2)                                    *TSS ---------ARR11(3)--------->HSFB2a(2)                                  <---------ANAC58 -------->ARR11(3)<---------HSFB2a(2)               <<<<<<<<<TBF1      <---------ANAC58   <---------MYB52(1) ===HOX2a_HOX2a  <---------LBD16        <---------TOE2(3)   <---------ALFIN1    <---------ICU4     --   gagaacttcttcaagtagctcgggaagaatgtcgatcgaattagggttctcttcttcttcccccatttttgaagcttgttgataactacactgtttgttt  17992200                                                                                       --------->AHL20(2)                                                                                   -------->ATHB1                                                                                   <--------HAHB4                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                   --------->ATHB51                                                                                  <---------ATHB51                                                                           --------->TGA2(2)                                                                         --------->ANAC58                                                                         --------->ANAC58                      --------->YAB1                                     --------->ANAC55(2)                      <---------ICU4                                <------ZmHOX2a(1)  <---------AHL20(2)                     --------->ICU4                              <---------ICU4   <---------ATHB12                     <---------YAB1<---------AHL20(2)            --------->YAB1   --------->ICU4                    --------->AHL20(1)                       <---------AHL20(2) --------->WOX13(1)                    <---------AHL20(1)                      <---------ATHB12  <---------ATHB12                    --------->AHL20(2)                      --------->AHL20(2)------------>CBF                    <---------AHL20(2)        <----------DOF2--------->AHL20(2)--------->AHL20(2) ------->YAB1      --------->YAB1  --------->AHL20(2)   ------------>CBF <---------ANAC55(2)   atcatcttcgatatttgtgaattataattagacacatttatttaaggcctttttatggcccaattaataaggacgacgtaatcaattatttaaatttgca  17992300                                        <---------ANAC58                                        <---------ANAC58                                          <--                                  <---------AHL20(2)                                              ---                                  <---------AHL20(1)                                              ---                                  --------->AHL20(2)          --------->DAG2                      ---                            --------->ANAC58            <<<<<<<ZML2                            ------                            --------->ANAC46     --------->AHL20(2)<-------TEIL      <------NtERF2<--                            --------->ANAC58  --------->YAB1 ---------->DOF2<---------MYB52(2) <-----   atagtggcattcttcacattgtggtcataaacgcattttatttcttactaataaactagaacataaaggtccatggcaactaatgcccgcttggcaataa  17992400                                                                                           <---------                                                                                        --------->YAB1                                                                                        <---------ICU4                                                                                       --------->ICU4                                                                                     --------->YAB1                                                                                    <---------YAB1                                                                                   --------->AHL20(2) -------ARR11(3)                                                                --------->AHL20(2) ------>ARR11(3)                                                                --------->AHL20(1) ------>GLK1(2)                           <---------ZAT6                        <---------AHL20(1) ------>ARR14(2)                   <---------AHL20(2) ----------->GT1       <---------AHL20(2)  ----- --->AHL20(2)                 <---------YAB1        ---------->DOF2        --------->AHL20(2)<------- -------ARR14(2)              --------->ICU4   <-------GAMYB        <----------DOF2<---------AHL20(2) ----AHL20(2)                --------->TOE2(3)----------->GT1  <----------DOF2 <---------AHL20(2)   aatctgccaatacattatctagtcgataaaacattattaacttagagtcagttacaaagtaaaaacttttctttctattaaatattttaataatcacacc  17992500                       <---------YAB1                     <-----------GT1                    --------->ICU4                                                    <---------ICU4                  --------->YAB1                                                      -------->HAHB4                  <---------ICU4                                                     --------->ICU4                 <---------YAB1                                                      <---------ATHB12                 --------->ICU4                                                      <---------YAB1                --------->AHL20(1)                                                  <---------TOE2(3)                <---------AHL20(1)                                                --------->AHL20(2)                <---------AHL20(2)                                                <---------AHL20(2)                --------->AHL20(2)                                               <---------YAB1           --------->AHL20(1)                                                  --------->YAB1           <---------AHL20(1)                                 <---------YAB1   --------->ATHB51           --------->AHL20(2)                                <---------TOE2(3) <---------ICU4  ------           <---------AHL20(2)                               --------->MYB52(1) <--------HAHB4  <xxxxx          --------->AHL20(2)                               ----------->TGA1   --------->ICU4  xxxxxxx      --------->AHL20(2)                               --------->ZAT14        --------->AHL20(2) <--- --GT1<---------AHL20(2)   --------->YAB1              <---------ZAT14  ----------->GT1  <---------MYB46(3) ---->TOE2(3)  --------->YAB1      <<<<<<<<<GATA-1   --------->ANAC46   <---------ANAC46<---------YAB1 --ALFIN1 <---------AHL20(2)    <---------AHL20(2) --------->ZAT6   --------->ARR11(3)--------->YAB1   ttagttatataaataaattataattactatcaaatttatctatgggaatatgaacactaaactgacgatagatgttgtgaataattaatgatggttccaa  17992600                                          <---------------AGL15                                          ===========================================================MADS_MADS                                          ----------->RAV1(1)                                        ------>MYB46(1)                                        ------>MYB83                                       --------->ANAC58                                     <--------                                       --------->ANAC58                                   -----------                                       --------->ANAC46                                <---------ARR14(2)      <---------ANAC58                --------->MYB46(3)  <---------DAG2               --------->ARR14(2)      <---------ANAC58             --------->ANAC58       <----------DOF2          ----------------->AGL1 --->WOX13(1)                      --------->ANAC58    <-----------GT1         <---------ANAC58 xxxxxxxxxxxxxsmallRNA(si3)    --------->AtLEC2        <---------AHL20(2)      <---------ANAC58<----- xxxxxxxxx>smallRNA(i)  <---------At4g35610      ----------->GT1    <-----------GT1----------------->AG ------ATHB12     <----------DOF2  --------->ANAC46--------->AHL20(2)  <---------ALFIN1--------->GLK1(2)   tcaatttgccttgttcaatactttggagcaaacatgcacaccagccacaagaagtaattactttttgttttctccactcgtacttgccaaatctgttata  17992700  Previous    Next  AGI:  At2g43260.1    Description:  F-box family protein / S locus-related. Identical to F-box/LRR-repeat protein At2g43260 [Arabidopsis Thaliana] (GB:Q8S8Q9;GB:Q8GYT2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43445.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 17990768    to: 17992181    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g43261.1    Description:  contains domain RING/U-box (SSF57850); contains domain ARIADNE RING ZINC FINGER (PTHR11685) Range:  from: 17992324    to: 17993852    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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