Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <------ZmHOX2a(1)                                                         --------->ANAC58                                                       <-----------RAV1(2)                                                      --------->At4g35610                                                      --------->ZAT2                                -                                                     ----------->RAV1(1)                           --                                                ---------->DOF2                                    ==                                           ======================HOX2a_HOX2a                       --                                           ------>ZmHOX2a(2)                                    <----                                          =======================HOX2a_HOX2a                    <----                                          <------ZmHOX2a(2)                                     <----          --------->LBD16                --------->ARR14(2)         --------->ARR11(3)          -----    ----------->HVH21                    <---------ARR11(3)         <---------ARR11(3)         <-----   <---------MYB52(2)                    --------->ARR11(3) <---------GLK1(1)              --------->ANAC58 --------->GLK1(2) --------->CCA1(2)     <---------ARR14(2) --------->GLK1(1)              --------->ANAC58 --->DOF2<---------LBD16                <------ZmHOX2a(1)--------->ANAC58      <------ZmHOX2a(1)-----   gagaaactgaccctggaagagagatgggaacaagagtccaaaggatctacaaaagcagcaggaaatctaagagcttgatcaggaacagaaggcaaggcag  17921500                                                                                          ------>MYB46(1)                                                                                          ------>MYB83                                                                                        -------------        <---------At4g35610                                                             <---------MYB111(1) -------------->AGL15                            ==================================================== --------------->AGL3                            ------->GAMYB                          <------------ ==================================================================================================== --------------->AGL2       --------->HSFC1(2)   ----------------->AGL3                --------->ANAC46 -----ZAT2               <------ZmHOX2a(1)   --------->MYB46(3)                        <------------- -----At4g35610        <---------TOE2(3)     --------->AtMYB61                         -------------- --NtERF2    ---------->DOF2<---------HSFC1(2) -------->P     <----------DOF2          -------------- ---->At4g35610--------->ANAC58        --------->ANAC46    --------->ARR11(3) <------ZmHOX2a(2) ----ATERF1(1) --------->ANAC58     --------->REM1(1)      <---------ARR11(3)--------->ARR11(3)   --- ---->ZAT2  <---------MYB52(1)    ------>ZmHOX2a(1)   --------->AHL20(2)     <---------ARR11(3)  <---   ctccaaattgagcagttaagccagtaaggaagtctccttcaacaccatcaacccaatttaagacctttacctatatgaagatcatttccaccaaatatag  17921600                                                   --------->ZAT14                   --------->ANAC58 -->AGL15                                        --------->ANAC46      <-------TEIL--------->CCA1(2) ===MADS_MADS                                 --------->ZAT14         --------->CCA1(2) ---AGL15                                     <---------ZAT14         --------->ARR14(1) ===MADS_MADS                                 --------->ZAT18        --------->ARR11(1) ----AGL3                                   --------->ANAC46         --------->ARR14(2)           --- --->AGL3                               <---------ATHB12             <---------ARR14(2)--------->ARR11(3) --->AGL2---------->DOF2              --------->WOX13(1)           ----------->ARR10 --------->ANAC58 ------>GLK1(2)                     <------ZmHOX2a(2)          --------->ATHB12  --------->YAB1   --- ------GLK1(2)                     <---------ARR11(3)       ----------->GT1   ---------->DOF2   -----   aatctcattaacaaagagagagagagaaggaaaactagatcaatcaactccactgaaccagagagtgattagatacgaagtaaagataagaaattgaatg  17921700                                                                            --------->MYB52(1)                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                         ------>NtERF2                                                                        --------->RAP2.3(2)                                                                        --------->DEAR3(1)                                                                        --------->RAP2.6(2)                                                                        --------->RRTF1(3)                                                                       --------->RAP2.3(1)                                                                       <------NtERF2                                                                       --------->ATERF1(1)                                                                       --------->RRTF1(1)                                                                      ------>NtERF2                                                                     <---------ATERF1(1)                                                                     --------->RAP2.3(2)                                                                     <---------ATERF1(2)                                                                     --------->DEAR3(1)                                                                     --------->RAP2.6(2)                                                                     --------->ATERF1(2)                                                                     <---------DEAR3(1)                                                                    --------->ATERF1(1)                                                                    --------->SPL7                                                                    --------->RAP2.3(1)                                                                   --------->ATERF1(1)                                                                   <---------At4g35610                                                                   --------->At4g35610                                                                   <---------ATERF1(1)                                                                   <------NtERF2                                                                   --------->DREB2C(1)                                                                  <---------SPL7                                                                  <---------ATERF1(1)                                                      --------->ANAC58<---------At4g35610                                                      --------->ANAC58<------NtERF2                --                                                      --------->ANAC46--------->DREB2C(1)    <------ZmHOX2a(1)                                                   <---------WRKY12<---------DREB2C(1)    <----------                                                   <---------WRKY38(1)<---------ATERF1(1)--------->ZAT2                          <------ZmHOX2a(1)--------->HSFC1(2)     <---------DEAR3(2)    --------->ANAC58                       <-----------RAV1(2) <---------HSFB2a(1)    ------>NtERF2         ------>MYB46(1) ---->TEIL    <---------------AtSPL8       <---------HSFC1(2)    <---------DEAR3(1)     ------>MYB83 -------->RAV1(1) --------->SPL7           --------->HSFB2a(1) <-----------HVH21        --------->ANAC58 ---->ZAT18--------->ATHB12              <---------GLK1(2)<-------TEIL<---------DREB2C(1)<---------ZAT2   caccatttgaaacttattggtacagccaggagactcgaggctggaatcttcggtccacgatacatcgtcggccgccgctaccgaaaaaccaagcaggaga  17921800                                   <-----------ARR10                                  <------NtERF2                                 <---------MYB46(3) --------->ANAC46                               <---------------------WRI1                               <---------At4g35610  <---------ANAC55(2)                               <---------LBD16      --------->ANAC58                         >>>>>>>>                         <---------MYB46(3)         --------->ANAC55(2)             >>>>>>>>>TBF1                   <---------ARR14(2)               --------->ANAC58               xxxxxxxxxxxxxxxxxx  <-----------------------TaNAC69(2)<------ZmHOX2a(2)                            >>>>>>>>>TBF1  >>>>>  <---------ICU4   --------->ARR14(2)            ----------->TGA1               xxxxxxxxxxxxxxxxxxxxx ------->YAB1      --------->MYB52(1)        ------>NtERF2           <---------ARR14(2)   >>>>>>>>>TBF1 -RAV1(2) <---------TOE2(3)  <---------DEAR3(1)  ----------->HVH21   --------->ARR14(2)>>>>>>>>>TBF1   agaataagtactaaggctgaatatcggtgattcggcggatcaaacgacgacatgacgcaatcgactgagcaaatcggagagaagaagaagaagaagaaga  17921900                                                                                            <--------                                                                                           <---------                              --------->HSFB2a(2)                                  --------->YAB1                             <---------LBD16    --------->ETT(2)                   <---------ICU4                          <----------DOF2       <---------ETT(2)                   <--------ATHB1  <----------ID1----------->GT1            --------->SPL7                     ------------>CBF >TBF1---------->DOF2  --------->ARR11(3)----------->HVH21        <-----------GT1 <---------ATHB12 xxxxx>smallRNA(se3)   <---------ARR11(3)<---------SPL7      <----------DOF2  --------->AHL20(2) >>>>TBF1      <---------ANAC46--------->LBD16 *TSS   --------->YAB1   ------>ZmHOX2a(1)<----------DOF2 xx>smallRNA(se3)<-------GAMYB<---------HSFB2a(2)    <---------YAB1<-----------GT1<---------ATHB51   agaagagacaaagagttgctgttaaaatctttctgggatatatcggacggtcgatattatagtcttttttatcctctaaattcaataattcttttactgt  17922000                                                                                                <----                                                                                            ---------                                                     <----------DOF2               <---------AHL20(2)                                                 <---------At4g35610              --------->AHL20(2)                                                 --------->At4g35610              <---------AHL20(2)<                                            --------->ANAC46                   --------->AHL20(2)   -                                            --------->ANAC58                --------->YAB1<---------- <------------CBF <---------WOX13(1)        ----------->HVH21            --------->YAB1<---------AHL20(1) -At5g28300<---------DAG2--------->TOE2(3)  --------->ANAC58         --------->YAB1--------->AHL20(2) --GT1 ------------>CBF<-------TEIL     --------->CCA1(2)           <---------ATHB12--------->AHL20(2)   ttctattgtgccaatttttgagtgattcattaaaactatatgatatacgacagctctttttgctcaactaatcaaaaatcataaattaatatatgtcgca  17922100                                                <---------ALFIN1                                             ------>ZmHOX2a(2)                                            --------->GLK1(1)                                            <------ZmHOX2a(2)                                           <---------ARR11(3)                                           --------->ARR14(2)                                           <---------ARR14(2)         <---------AHL20(2)                <---------GLK1(2)        --------->AHL20(1)                 --------->ARR11(3)        <---------AHL20(2)                 --------->AGP1        --------->AHL20(2)                --------->At4g35610 ------DOF2                               <---------At4g35610 ->ID1  <---------AHL20(1)           <---------GLK1(1)         <---------ANAC58 ---------ANAC55(2)             --------->At4g35610            <---------ANAC58                    -- ---------->GT1     ---------->DOF2  --------->GLK1(1)       <-----------GT1                     <--- -RAV1(1)<---------YAB1         <---------At4g35610     ------->TEIL                           ------   ttatgtaaaatataatggtttcaaaagtattttgagcagaattcagatccccacgatgtattttgacttgtctagtatgtcaaacaaacaaatagaacag  17922200                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                             ----------->GT1                                             <---------DEAR3(2)                                           --------->SPL7                                         <---------SPL7                                        <---------ATERF1(2)                                        <---------RAP2.6(2)                                        --------->ATERF1(2)                                        --------->MYB46(3)                               --------->AHL20(2)                                      --------->SPL7                                     <---------AHL20(2)             --------->ATHB12         --------->MYB52(1)                                --------->AHL20(2)       <------ZmHOX2a(1) <---------YAB1--------->DEAR3(2)                               <---------AHL20(2) ------->MYB59>>>>>>>>>ARR2         <---------SPL7                                      <---------AHL20(1) ------MYB52(1) ----------->GT1    --------->TOE1(1)                        --------->ANAC58 ----->GT1  <---------YAB1         --------->TOE2(1)        --------->ATHB12--------->ANAC58   ttaagtagaggagtttgattgtaaattctaaatgtcatcgtaccggccggtttaaatgttcttcatttgataactatcaagaaaaactaaattatttaga  17922300                      <-----------GT1         --------->ARR11(3)             ------->TEIL               --------->YAB1               <------ZmHOX2a(1)      <---------AHL20(2)            --------->ZAT6            <--------ATHB1 <---------ALFIN1  <-----      --------->AHL20(2)          <-----------GT1 --------->ANAC58<-----------RAV1(2)          ------     <---------AHL20(2)      <---------AHL20(2)   --------->ANAC58<---------LBD16             -------   taactaatttatatgaactcgatttatctgtttatttaacaatagaaatatcaagaaaaacgaataattcaggagagaaacaccttcttggttatataaa  17922400  Previous    Next  AGI:  At2g43070.1    Description:  protease-associated (PA) domain-containing protein. similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G05820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45292.1); contains InterPro domain Protease-associated PA (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, signal peptide peptidase; (InterPro:IPR007369) Range:  from: 17917965    to: 17921947    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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