Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------------->AtSPL8                                                                                 ------>MYB83     <---------YAB1                             ------>ZmHOX2a(2)                ------>MYB46(1) ---------ZAT2                                  ===============================HOX2a_HOX2a ---------At4g35610                             ===================================HOX2a_HOX2a -------->ZAT2           <---------HSFB2a(2)  <---------AGP1                   <---------MYB59 -------->At4g35610      --------->HSFB2a(2)  --------->ARR14(2)             --------->ARR14(2) ------NtERF2           <---------LBD16       <---------ARR14(2)            <------ZmHOX2a(1) -------RAP2.6(2) <---------ANAC58       <-------GAMYB                  <------ZmHOX2a(1)------->TEIL ---------RAV1(2) <---------ANAC58      --------->MYB52(2)   ----------->HVH21--------->At4g35610 ->ATHB12     <------ZmHOX2a(1)    <---------AtMYB61        <-----------HVH21<---------ARR14(2)     <   gcagctgaagattgtaggatgcgagttctggagcggtatggtgagttggatctgttccagcctgtgatgggcgaggaaggacctgcctctgtacctcttc  17901500                                                                                                -----                                                                                               <-----                                                         <---------WOX13(1)                   -------                                                       --------->ATHB12                       <------                                             --------->TOE1(3)                              <--------               --------->ANAC46           --------->ARR14(2)                               --------->ETT(1)            --------->ZAT14               <---------ARR14(2)                               <---------ANAC46       <---------CCA1(2)           --------->HSFB2a(2)--------->ICU4                     <-----------HVH21 <---------ARR11(3)                <---------HSFB2a(2)<---------YAB1                  <---------ANAC58 --------->ARR11(3)           --------->DOF5.7(2)--------->ANAC55(2)              <---------YAB1----- ---------CCA1(2)         <---------DOF5.7(2)--------->TOE2(3)         ------->TEIL   <---------ANAC58   ttatatctcgtctctaaactccatcagttatcgtttactagaaggaacctcaagtgatgattgtcttaatatgaaactaaaattattctcgtgtcggatc  17901600                                                                                            =========                                                                                            <--------                                                                                        --------->YAB1                                           <---------AHL20(2)                        --------->YAB1                                           --------->AHL20(1)                     --------->YAB1 ------>GT1                                <---------AHL20(1)                    <---------YAB1 -ZmHOX2a(2)                               --------->AHL20(2)              <---------AHL20(2) -->ARR14(2)                              <---------ATHB12             --------->AHL20(2) <---------YAB1 ---ARR14(2)                              --------->AHL20(2)          <---------YAB1<---------YAB1 -DEAR3(2)                            --------->AHL20(2)              <---------AHL20(2)<---------ICU4 ->ZmHOX2a(2)                     <---------AHL20(2)     <---------CCA1(2) --------->AHL20(2)   <----   gtttaaaacattcccagtcttattttctcagtgtttttaattcaataaattggaacattatatccttgtgatattatttatatatgataatcatctttaa  17901700                        <---------TGA1a                        ==========================================bZIP_DOF                        --------->TGA1a                ==================bZIP_DOF                  ----------->GT1                <----------DOF2                        ---------->DOF2   --------------->AtSPL8                          --------->YAB1                 ----------->GT1 =================================bZIP_DOF        <---------ATHB12         <---------------AGL15 --DOF2      <---------AHL20(2)                  ------>MYB83----------->GT1  --------->YAB1 -----TOE2(3)<-----------GT1 <---------At4g35610 ------>MYB46(1)    --------->AHL20(2)--------->AHL20(2)   gaattcaagtactattttcttttctcacttgtgctaactaatataaacaccaatcttgaaagaggttaaattgaatacaataagaagaaaaaatacaaaa  17901800                                                                                --------->ICU4                                                                                <---------YAB1                                                                              --------->YAB1                                                                             <---------YAB1                                                                <---------ARR14(2)                                                                <---------ARR11(3)  <---------AHL20(1)                                         --------->AtMYB61      --------->ARR14(2)  --------->AHL20(2)                                        <---------MYB55(2)      <-----------ARR10   <---------AHL20(2)                                  ----------->GT1               --------->GLK1(2)--------->YAB1                  <------ZmHOX2a(1)     --------->MYB46(3)      --------->ARR11(3)  --------->AHL20(1)              ---------->DOF2    --------->DAG2            <---------YAB1----------->GT1             <---------AHL20(2)---------->DOF2          --------->ICU4 --------->At4g35610  --------->AHL20(2)    <-----------RAV1(1)        ----------->GT1     <---------At4g35610--------->YAB1   tgaataaaatcagatttaaaggaccgatgttgcaaaaggtaaaccaccgtgttttgtaaatatgagtatcttcagcggtataataataaatttcataact  17901900                                                                                                 <---                                                                                                <----                                                                                                <----                                                                                              <------                                                                                           <---------MYB46(3)                                                                                          <--------P                                                                                          <---------MYB52(1)                                                                   ----------->RAV1(1)   <-------GAMYB                                                                   ------>NtERF2        --------->MYB55(2)                                                                  --------->ANAC46      <---------MYB46(3)                                                                  ----------->HVH21    <---------ANAC46                                                                  <---------ETT(1)     <---------ANAC58                --------->ALFIN1                             ------->TEIL              <---------DREB2C(2)              <-----------RAV1(1)                            <---------ARR14(2)        <---------RAP2.6(2)              --------->ALFIN1    ------>ZmHOX2a(1)          --------->ARR14(2)        <---------DEAR3(1)             *TSS          <----------DOF2            ------>ZmHOX2a(1)                <---------ANAC58        --------->CCA1(2)  <---------DAG2    <-----------ARR10<---------GLK1(1)      ------------>AtMYB77   ggagaagaagataagagtgtggcacagagctttatcctctctcagagtttcttctcctctgtgaatctccgacaatggcgatagctatggcggttgtttc  17902000                                                                      ------>ZmHOX2a(1)                                                                  --------->ARR14(2)                                                                 --------->GLK1(1)                                                             <------NtERF2                                                            --------->LBD16         <---------At4g35610      <---------ZAT14           ------>NtERF2    <---------CCA1(2)             --------->ZAT14          --------->LBD16 -------DOF2            <---------DAG2             <----------DOF2<---------ARR14(2)              --- -----ANAC58            --------->TOE2(3)<---------ZAT14  <---------LBD16                <---------ICU4 -----ANAC58            --------->TOE1(3)--------->ZAT14------>ZmHOX2a(1)                --------->YAB1 -----GT1--------->At4g35610   ------>ZmHOX2a(1)<---------ALFIN1 <---------GLK1(1)      <---------ATHB12   tttcccatctctgctcaacaaaacaaccttatcctcttcactcttcactcccactttcctcccggcgaaatcctcttcacttctcatcaaatcatcacca  17902100        <---------ANAC46                                                                            -        <---------ANAC58                                                                            <        <---------ANAC58                                                                --------->ZAT18       <-------TEIL           <---------ZAT2                                            <------NtERF2     <---------ARR14(2)       --------->At4g35610                                     --------->ANAC58     --------->ARR14(2)       --------->ZAT2               <---------LBD16            --------->ANAC46     <---------GLK1(2)   --------->AtLEC2                 <---------LBD16             --------->ANAC58 ------->DOF2   --------->YAB1<---------At4g35610----------->GT1--------->ICU4       --------->RAP2.6(3)   aaaaccagattcgtggtttcatcatccatggaagctggaatcggagtaatggggtcaaaactcgggatgatgagtttcttcgaagaagacggcacagtag  17902200                     <---------HSFB2a(2)                 --------->ARR14(2)                 <---------ARR14(2)                --------->ARR14(2)                                    ----------->HVH21                <---------GLK1(2)                                  --------->ARR14(2)                <---------ARR14(2)                                 <---------ARR14(2)             <---------TOE1(2)                                    <-------GAMYB            <------NtERF2                                     ------------>MYB.PH3(1)          <-----       ------->GAMYB --------->LBD16                      ----------->RAV1(1)                 <------      --------->ZAT6 --------->HSFB2a(2)               --------->ANAC58                      <-------      --------->MYB46(3)  ----------->GT1              --------->ANAC58   ------>NtERF2   <---------At5g28300 -------->HSFB2a(2) <---------ANAC46          --------->YAB1<-----------RAV1(2)           <---------DOF5.7(2) ---------HSFB2a(2)<---------LBD16           <---------ATHB12 ------------>AtMYB77 ------------>MYB.PH3(1)   ttccagtaacagtcgtcggattccgcgaaggtaacatcgtaacccaaatcaaaaccctagccacagacggttacgacgcggttcaaatcggttaccgtcg  17902300         ---------->DOF2    ----------->RAV1(1)             --------->At4g35610   <----------ID1                   <---------At4g35610   --------->ANAC46             <-----------HVH21 --------->ANAC58         <---------ARR14(2) --------->ANAC58         --------->ARR14(2)     <---------DEAR3(2) --------->ANAC46     <---------LBD16            ----------->GT1 ----ANAC46     <-----------------AGL1      --------->DAG2                                         <- ---MYB52(1)   --------->MYB52(1) <---------WRKY38(1)                --------->At4g35610           <- ----HVH21--------->DAG2--------->LBD16    ---------->DOF2    <---------ATHB12           --------->MYB46(3)   tgtacgcgacaaaaagctaactaaaccggaaaccggtcatctccaaaaagccggtacaatcccaatgagacatctccaagagttcagattaacaaacatc  17902400  Previous    Next  AGI:  At2g43020.1    Description:  ATPAO2 (POLYAMINE OXIDASE 2); amine oxidase. similar to ATPAO3 (POLYAMINE OXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G59050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69965.1); similar to hypothetical protein OsJ_015520 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32037.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) Range:  from: 17898580    to: 17901712    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g43018.1    Description:  CPuORF17 (Conserved peptide upstream open reading frame 17) Range:  from: 17898581    to: 17901710    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g43030.1    Description:  ribosomal protein L3 family protein. Identical to 50S ribosomal protein L3-1, chloroplast precursor (RPL3A) [Arabidopsis Thaliana] (GB:Q9SKX4;GB:Q8LEQ9); similar to RPL3P (ribosomal protein large subunit 3P), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G17465.1); similar to 50S ribosomal protein L3, chloroplast precursor (GB:O80360); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597); contains InterPro domain Translation elongation and initiation factors/Ribosomal, beta-barrel (InterPro:IPR009000) Range:  from: 17901913    to: 17902943    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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