Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->AHL20(2)                                                               --------->YAB1                                                          <-------TEIL                                                         --------->CCA1(2)       <----------DOF2                                                      <---------------AtSPL8  --------->ARR11(3)                                                    ---------->DOF2    --------------->AtSPL8   acttccaagactcgatgctccgttttaaaacatttatgtgaataaacacacataaaaagatacaaaaataaaacatgtactatctttttatcttcgtctt  17880400                        --------->TOE1(2)                        --------->TOE2(2)                --------->YAB1               <---------YAB1             -------->HAHB4             --------->YAB1<---------ANAC55(2)             <---------ICU4--------->ANAC46            <---------ATHB51         <-----------GT1            --------->ICU4 --------->ANAC58                                              --------->DAG2         --------->AHL20(2)--------->ANAC55(2)       --------->HSFC1(2)                 ---------->DOF2       --------->ANAC55(1) --------->ANAC58          <---------HSFC1(2)             <---------TOE2(3)       <---------ANAC55(2) --------->ANAC55(1) ---------->DOF2                      <---------TOE1(3)       --------->ANAC55(2)<-------TEIL<---------At5g28300       <---------YAB1<---------YAB1 <-------   caaaacaacacttaattatgataaaacatacgtaacaatttactgctaaaaaagaagcttagaattctaatacacaaattgttattgaggtaaagtgtca  17880500                                     --------->ANAC58                                     --------->ANAC58  --------->TOE1(3)                  <---------YAB1--------->ANAC58       --------->TOE2(3)      <---------AHL20(2)        --------->ANAC58       --------->YAB1      --------->AHL20(2)       --------->GLK1(1)     -------->P ---------->DOF2   <---------AHL20(2)         ---------->DOF2       ------->GAMYB--------->DAG2     --------->AHL20(2) <---------AHL20(2)    ---------->DOF2             <---------MYB55(2)          <-------TEIL --------->AHL20(2)  --------->CCA1(2)             --------->MYB46(3)      --------------->AtSPL3 ----HVH21--------->YAB1     <------ZmHOX2a(1)     <---------MYB111(2)     --------------->AtSPL8 ---   tatataaatttatcaaaatcaagataaaagaggaaagccaagcccatatttcaacaaccataaacaaaaagtcttaaaccgtacatttacatatgttttc  17880600                                                                                                    <                                                                                                    <              <XXXXXXXXXXXXXXXXXXXXMIR426                                                          <-          --------->YAB1                    --------->GLK1(2)    --------->ANAC58                 <XX          --------->ATHB12                 <XXXXXXXXXXXXXXXXXXXXXMIR4221                        <----   <---------ANAC58                      <---------TOE2(3)       --------->ANAC58              <-----   <---------ANAC58            --------->YAB1                  ---------->DOF2                ------- --->ZmHOX2a(1)<----------ID1 <---------ATHB51               <----------DOF2                 <-------   ctcttacttgaatcatagggacaaatttctcaattataagtttaagaatttgacataagaaaactttaagcaaaattccatataactactatgtcttcat  17880700                                                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                   *TSS                                                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <--------ATHB1                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  --------->ATHB12                 xxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ICU4                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ZAT18               -------->ATHB1                 <---------bZIP60(1)    --------->ZAT18               --------->ATHB51               --------->bZIP60(1) ---------REM1(1)                 --------->YAB1            --------->YAB1 -----------RAV1(1)              <---------ATHB51           <---------ICU4                       ---- --------TOE2(3)                 <---------YAB1             -------->HAHB4               <------NtERF2 XXXXXXXXXXXXXXXXXXMIR397A       --------->ICU4            --------->ICU4              <---------DEAR3(1) -----WOX13(1)                ------------>ATHB5           <---------ATHB51         --------->DAG2 -------CBF                  ------------>CBF         --------->YAB1          <---------ATHB12   ---- -->ATHB12       <---------AHL20(2)       ----------->GT1--------->YAB1     --------->MYB52(1)   ---- --YAB1          --------->AHL20(2)<------------CBF   ----------->GT1     xxxxxxxxxxxxxxxx>smallRNA(s)   tgatgttgcactaggtgattttaatatttgatacaattattgtatagttatacaaatagtaataatgacttcatggcccaatggataaggcgctggtcta  17880800                                                                        ------->MYC2                                                                        <-------MYC2                                                                        <-------MYC3                                                                        ------->MYC3                                                                        <-------MYC4                                                                        ------->MYC4                                                                       --------->O2                                                                       <---------ANAC55(2)                                                                       <---------O2                                                                       ==============================                                                                       --------->ANAC55(2)                                                                       ==============================                                                                       --------->TGA1a                                                                  ----------->HVH21                                                                 <-----------HVH21                                                                 <-----------TGA1                                                                <---------TGA1a                                                                --------->TGA1a                                                                <---------O2                                                                --------->TGA2(1)                                                                --------->O2                                                                <---------ANAC55(2)                                                                <---------TGA2(1)                                                                --------->ANAC58                                                                =====================================                                                                --------->ANAC58                                                                =====================================                                                                --------->ANAC46                                                                --------->ANAC55(1)                                                                --------->bZIP60(2)                                                                --------->bZIP60(1)                                                                <---------bZIP60(1)                                                                --------->ANAC55(2)                                                               <-----------STF1                                                            <-----------TGA1                                                           --------->bZIP60(2)                                                           --------->O2==============================                                                           <---------O2<---------TGA1a                                                           --------->TGA1a                                                           <---------TGA1a                                                           --------->ANAC46                                                           --------->ANAC55(1)                                                           --------->ANAC58           xxxxxxxxxxxxxxxx>smallRNA(fl3)                  --------->ANAC58         --------->GLK1(2)   --------->ZAT14               <---------ANAC55(2)         <---------ARR14(2)  <---------ZAT14               --------->ANAC55(2)        xxxxxxxxxxxxxxx>smallRNA(le3)                      ======================bZIP_bZIP        <---------GLK1(2)    <---------ZAT18               ==========================================       xxxxxxxxxxxxxxxx>smallRNA(fl3)               =============================bZIP_DOF      xxxxxxxxxxxxxxxx>smallRNA(s)                  ======================bZIP_DOF      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          =================bZIP_DOF      xxxxxxxxxxxxxxxxx>smallRNA(se3)               <----------DOF2  <---------ALFIN1              <-      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ----------------------->TaNAC69(2)                  <--      xxxxxxxxxxxxxxxx>smallRNA(i)    ===============================bZIP_DOF                    <---     xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <----------DOF2     <-----------STF1          --------->MYB52(1) ----->ANAC58        <------ZmHOX2a(2)====================================bZIP_DOF<---------MYB52(2)< ----->ANAC46       --------->ARR14(2)===========================================bZIP_DOF------->TEIL ----->ANAC58    xxxxxxxxxxxxxxxx>smallRNA(s) <---------ICU4<-----------HVH21 <-----------HVH21  <---   cgaaaccagagattctgggttcgatccccagtgaagtcgtctttttcatttttgctttaacacgtcacgtcacacgtgttcgtcacaaacgaatttgagg  17880900     <----------DOF2 ==========bZIP_DOF ======MYC_MYB ======MYC_MYB ==========bZIP_DOF         <---------YAB1 ==========bZIP_DOF      --------->ICU4 ======MYC_MYB        <---------AHL20(2) ------GAMYB----------->HVH21    <---------AHL20(2) -------MYB46(3)      --------->AHL20(2)                        ----------->HVH21            <------- ------DEAR3(1)       <---------ATHB51                          ------>ZmHOX2a(1)       <------------CBF ----------DOF2      <---------AHL20(1)                       ----------->RAV1(2)  ----------->GT1 ------RAP2.6(2)  --------->AHL20(2)        ------------>CBF<-----------GT1      <------------CBF   -   cggtttactttggtctgacataaaataattcttattttttctccaaaacaatatttgaaaattttcctgacctctcaaacagaaattgaaaattgaaatc  17881000                        *TSS                      --------->HSFC1(2)                     --------->AHL20(2)           <---------HSFC1(2)              ----------->GT1                     --------->ZAT2            --------->ZAT14                       <---------ZAT2   <------ZmHOX2a(1) <---------AHL20(2)       <---------ANAC58       ----------->HVH21 --GLK1(1)  <---------ZAT14      ------->TEIL <---------ANAC58     --------->ANAC55(2) -------->At4g35610  --------->AHL20(1)    --------->ALFIN1   <----------DOF2              <---------ALFIN1   tcagaggaacacagtatagaaaataaaataaaacgaatttttgcagtggcgaagcttggagcctctttcatgtgatggccttgaacttcttctccacttc  17881100                                                                                            <--------                                                                                            ---------                                                                                          --------->ZAT18                                                                                          <---------ZAT18                                                                                        <-----------HVH21                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                       ----------->HVH21                                                                                      ------->MYC2                                                                                      ------->MYC4                                                                                      <-------MYC4                                                                                      <-------MYC3                                                                                      <-------MYC2                                                                                      -------->ABF1                                                                                      ------->MYC3                                                                                     --------->O2                                                                                     --------->TGA1a                                                                                     <---------TGA1a                                                                                     <---------ANAC55(2)                                                                                     <---------O2                                                                                     --------->ANAC55(2)                                                                                    ------------>OsbHLH66                                                                                   <---------ALFIN1                                                           <---------HSFB2a(2)   ----------->RAV1(1)                                  =============================HOX2a_HOX2a    --------->ANAC58   --------->ANAC46               <------ZmHOX2a(2)        --------->HSFB2a(2)--------->ANAC58   --------->ANAC58         =============HOX2a_HOX2a    ------>ZmHOX2a(1)     --------->ANAC46   --------->ANAC58         ------>ZmHOX2a(1)    <---------ICU4            ------>ZmHOX2a(1)<------NtERF2   tcttcacccaatttcaaacccatcttcttcctctcgatccaaacagagccatcatctccttctgcaactctcttctcctccagcaacacgtgtccgctcc  17881200                       <---------ETT(2)                       <---------bZIP60(1)                    ----------->TGA1               ------>NtERF2                                            ----------->HVH21     <------               <-----------TGA1                                    <---------MYB52(1)   <---------MYB46(3)               <-----------HVH21                                  --------->LBD16      <--------P   ----------->GT1  ----------->HVH21                      <----------DOF2          <---------TOE1(3) <---------ZAT14<------NtERF2                         ---------->ID1 <-------TEIL   <---------TOE2(3) -At4g35610   --------->ANAC46               --------->HSFC1(2)  --------->ANAC46   <---------YAB1 >At4g35610   --------->bZIP60(1)            <---------HSFC1(2) <---------LBD16 <----------DOF2   gagcgaagtgaaatcggcgtcactgacgacaacaacaacaacaacgatacttcttcgtcttctttctccggtacatgacccgatttatggttgttcattc  17881300  Previous    Next  AGI:  At2g42970.1    Description:  pre-tRNA. tRNA-Arg (anticodon: ACG) Range:  from: 17880767    to: 17880839    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g42975.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO69996.1) Range:  from: 17881024    to: 17882013    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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