Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           <---------ANAC55(1)                         <---------ANAC58                         <---------ANAC46                         <---------ANAC58                      <---------DEAR3(1)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->ALFIN1            <---------ANAC58                        <---------ANAC58            <---------ANAC46             <---------ANAC46         --------->ALFIN1            --------->ALFIN1             --------->ALFIN1       <---------ANAC58            <---------ANAC58           --------->ALFIN1         <---------ANAC46          <---------ANAC58           <---------ANAC46           <---------ANAC58                   --          <---------ANAC58           <---------ANAC58     ----------->HVH21                   <------          <---------ANAC46 --------->ALFIN1         <---------ANAC46                          -------       --------->ALFIN1 <------NtERF2<---------ANAC58 --------->ALFIN1               ----------->HVH21 ----->AtMYB77<---------ANAC46 ----------->HVH21    <---------ANAC58    <------ZmHOX2a(1)     -------   agttacaaggaggggtgtgtggagttggcgtgtgtgatggagtgtgtggagttggagtgtgtgatggagtggaaggagttggagtatgtgatggaggtga  17834200                                  --------->ZAT18                                 --------->ALFIN1                               <---------ANAC46                              <---------AtMYB61                              --------->DAG2                             --------->SPL7                            <---------MYB52(1)                    ----------->HVH21                            <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->ALFIN1                           xxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC58        <------ZmHOX2a(1)  <---------SPL7                   <---------ANAC55(1) --------->GT1        <---------HSFC1(2)                    <---------ANAC46 ---REM1(1)           <---------HSFB2a(1)                   <---------ANAC58--------->GLK1(1) -->ALFIN1            --------->HSFC1(2)                   <------NtERF2    <---------GLK1(1) ---->HVH21      <------ZmHOX2a(1)<---------ZAT18       <------ZmHOX2a(1) <------ZmHOX2a(1)        <-   agggtgagaaggagttgaaggagaagggtcgtaaggtggacttccacagttagaagaaggaggcgtgtgtgatggaggagttccatgtgagcctgcatga  17834300                                   ---------->DOF2                              <-----------GT1                       --------->GLK1(2)                      --------->ARR11(3)                               -------->P                      <---------ARR11(3)                   --------->ATHB12            --------->YAB1<---------YAB1             <-----------GT1<---------ANAC58     ---------->DOF2  <---------GLK1(2)           ----------->GT1   <---------ANAC58 <---------ANAC55(2)  <---------ARR14(2)         --------->DAG2 <XXXXXXXXXXXXXXXXXXXXMIR859 <---------ANAC46     --------->ARR14(2)        ---------->DOF2<------MYB83 --------ZAT14      ----------->ARR10       --------->AHL20(2) <------MYB46(1)    <------ZmHOX2a(1)   gttaagtgaaagaagcatagtgaagattcttattacatcaagcgaataaaaaaagttacaatgtttggtttcttaccagagggaggagataagtagtatg  17834400                               --------->ANAC58                            ------->GAMYB                      --------->ANAC58                      --------->ANAC58                  <---------HSFB2a(2)                                                     ------>MYB46(1)                  --------->HSFB2a(2)                                                     ------>MYB83                  --------->ANAC55(2)     --------->At4g35610                           --------->AtMYB61                  <---------ANAC55(2)     --------->ZAT2                                <---------ALFIN1                  --------->ANAC58        <---------At4g35610              --------->ANAC58                  --------->ANAC58     --------->At4g35610                 --------->ANAC46                  --------->ANAC46     <---------At4g35610                 --------->ANAC58                 <---------LBD16    ----------->ARR10                     --------->RAP2.6(3)                --------->MYB52(1)---------->DOF2            ---------->DOF2----------->GT1               <---------SPL7  --------->ANAC58            --------->At4g35610   <-----------ARR10        ------>ZmHOX2a(1)----------->RAV1(1)          --------->DAG2     --------->MYB52(1)       --------->TOE2(3) --------->MYB52(1)          ---------->DOF2--------->ZAT18  <-----------GT1   ttttggcatcctcaaaccttacggaagcaacagaagcaaagagctgctgtgagagtaaagcagcaaagagagcccaaacggcaaaactcaccatccctct  17834500                                                                  --------->MYB52(1)                                                   <---------ANAC58                                                   <---------ANAC46                                   <-------GAMYB   <-----------RAV1(1)        ----------->GT1         --------->ARR14(2)       --------->MYB52(2)          --------->YAB1 <---------TOE2(3)         <---------ARR14(2)       <---------MYB46(3)  ----------->GT1--------->LBD16     --------->YAB1            ------------>MYB.PH3(2)<---------ANAC46 <---------ARR14(2)    <---------YAB1   <-------TEIL <-----------RAV1(1)<---------AtMYB61 --------->ARR14(2) <---------AHL20(2) --------->GLK1(2)              <---------ANAC58<---------LBD16  <---------YAB1 --   cattttatgagaattcactgagattcagagagaagtttgttgcaaatggtattgtgtggtagaataaaaaccggatactagggtttataaatagagggaa  17834600                                                                                            <--------                                                                                          <----------                                                                                   ------->PIF5                                                                    <-------GAMYB --------->At4g35610                                                                   --------->MYB46(2)  <<<<<<<<<<PDF2                                                                   --------->MYB52(2)  <<<<<<<<<<ATML1                                                                 <--------P     <-----------RAV1(2)                                                                <-------GAMYB<<<<<<<<<<<<<<<<<<<<<ATML1                                                               ----------->GT1  <---------ANAC46                                                               <---------MYB46(3) <---------At4g35610             *TSS                                           --------->ALFIN1 <<<<<<<<<<<<<<<<<<<<<PDF2        --------->MYB52(1)                                --------->ALFIN1 <-----------RAV1(1)       ---------->DOF2                                  <---------ANAC46   --------->ALFIN1 ---------    --------->ANAC58                --------->AHL20(2) <------ZmHOX2a(1)   =================RAV    --------->ANAC58              ----------->GT1 --------->ALFIN1 <---------MYB46(3)<-------TEIL -------->DOF2           <---------TOE2(3)    <-----------RAV1(2)<---------MYB52(1)<-------PIF5   ggaaagaagcaaagggatttttgaattaagtttttgaagtaaatacaaacaggtggaggagtgtgtggttagttgatgtgttgcaggtgcatttacacta  17834700                                                                                              -------                   <---------WOX13(1)                                                    <----------DOF2                 <---------MYB46(3)                 --------->AHL20(2)               <-----------GT1    <---------AHL20(2)    --------->AHL20(2)   --------->AHL20(2)                   <---------AHL20(2)   --------->AHL20(2)     --------->YAB1     ----------->GT1        ---------->DOF2--------->AHL20(2) ---GT1          --------->ATHB12          ---------->DOF2 <---------TOE2(3)    --------->ATHB51 ---- -GT1           <---------YAB1      <---------GLK1(1)<---------AHL20(2)         <---------AHL20(2) >ZAT6     ----------->RAV1(2)      --------->GLK1(1)--------->AHL20(2)         --------->AHL20(2)   tcccatttaatacccctggtgattgcaataaaacttggaattctgcaaagtaaattaaaataagataagtgaaagagttgaattatttaatctttcatgc  17834800                                            --------->YAB1                 <---------TOE2(3)                                           <-------TEIL                    --------->MYB59                     --------->At4g35610--------->ATHB12              --------------->AGL15                     <---------At4g35610-------->HAHB4               <---------YAB1          <---------ANAC55(2)          --------->ICU4              <-----------GT1         <---------ATHB12 -->AtLEC2<---------ANAC46             <---------YAB1         <---------ANAC55(2)        --------->WOX13(1) ------>DOF2      ---------->DOF2      <---------ATHB12       --------->ANAC55(2)--------->ICU4<-----   aaaggcatggacgcgtatgagaaagctgtctcccatatgaaatgattcatcactctctctcagtccgtattactatttaggtcatgtttttcaatcaatg  17834900            <---------ANAC46            <---------ANAC58       --------->ALFIN1                                         --------->ARR11(3)       <-----------RAV1(1)                               <---------AGP1     <---------ANAC55(2)                                <------MYB83     <---------ANAC55(1)                                <------MYB46(1)     <---------ANAC58                                  --------->MYB59     <---------ANAC46      ----------->HVH21        --------->STY1(2)     --------->ANAC55(2) <---------AtLEC2           --------->ZAT2     <---------ANAC58    <---------ANAC58           <---------STY1(2)    <-------TEIL         <---------ANAC58           <---------ZAT2                            -------  <---------SPL7<---------ANAC46                   --------->ANAC58             <---------WOX13(1) ----ATHB12 <---------ANAC58                       --------->ANAC58 ----------->GT1 --------->ZAT6   actcggtacgtgttgcttatgtgtattgcatgacatgtttgtatcaaaaatgcaagctaggtctgagataatgtgaaacctgattaatactaagtaagta  17835000                      --------->DAG2       <---------YAB1---------->DOF2                       <------ZmHOX2a(1)  <----------DOF2      <---------TOE1(2)                                --------->TOE1(2)     <---------DAG2        --      <---------TOE2(3)--------->ANAC58              --------->GLK1(2)  --------->WRKY12          <--      <---------TOE2(2)--------->ANAC58             <---------GLK1(2)   ----------->ARR10     <------ -->ICU4<------ZmHOX2a(1)                      <---------ATHB12         --------->WRKY38(1)   -------   tcaactcttaggattgagacataaaaagcaagtggccatcaagactcaaatcaagaatctaggaagactaagcgtagacccttttgttttgtgcttctct  17835100  Previous    Next  AGI:  At2g42840.1    Description:  PDF1 (PROTODERMAL FACTOR 1). similar to Os01g0726700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044120.1); similar to hypothetical protein OsJ_003227 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13402.1); contains domain PRICHEXTENSN (PR01217) Range:  from: 17833193    to: 17834613    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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