Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------AHL20(2)                          <<<<<<<<<EIN3         --------                        <---------AHL20(1)                       --------->ANAC58          --------->YAB1                        --------->AHL20(1)                  --------->ANAC46               --------->AHL20(2)                        --------->ARR11(3)                <-----------GT1------->TEIL --------->ZAT18                        <---------ARR11(3)      ----------->GT1  --------->AtLEC2     <---------ZAT18              --------->ATHB12                <-----------RAV1(2)--------->ANAC58 --------->ALFIN1             <---------AHL20(2) --------->AHL20(2)   --------->ICU4   ----------->GT1----------->GT1 ------->At4g35610----------->GT1      --------->AHL20(2) --------->MYB52(1)   <------ZmHOX2a(1)  ---   tagctaaatattggtttaattggaaatattttttttatatataaaatgccaggtaaatattaacgacatgcaatgtatataggagtagggcaataaaaag  17826900                                      --------->HSFB2a(2)                                      <---------HSFB2a(2)                     <---------------AGL15                     --------------->AGL15                    <-----------------AGL2                    ----------------->AGL2                    <-----------------AGL3                    ----------------->AGL3                    ----------------->AGL1           --------->DAG2     ---------->DOF2       <---------At4g35610     ----------->GT1<-----------------AGL1         <---------YAB1                 <-----------GT1 ----------->GT1    <-----------------AG   ----------->GT1                    <----------DOF2 -->DOF2  ---------->DOF2---------->DOF2  --------->DAG2              <---------ALFIN1------>ZmHOX2a(1) ------->DOF2       ----------------->AG---------->DOF2               <---------CCA1(2)         -----   aaaaggagaataaaaagggattaccaaaaaaggaaagtttccaaaaggtgattctgatgagaaacagagcccatacctctcttttttcctctaaacatga  17827000                                                   --------->MYB52(1)                                                   ------>MYB83                                                --------->ANAC58                                                --------->ANAC46                                                --------->ANAC58                                      --------->MYB46(3)                                      <---------MYB55(2)     <----------DOF2                                     --------->ANAC46 ------->GAMYB                                     --------->ANAC58<------------AtMYB77                ------>ZmHOX2a(1)    --------->ANAC58<<<<<<<<<TAC1             <----------DOF2           <------MYB83            <---------ALFIN1------>MYB46(1)       <-----------GT1   --------->DAG2  ------>ZmHOX2a(1)------>NtERF2<---------MYB59 <----------DOF2 ----->DOF2<------MYB46(1)        --------->MYB46(3)--------->ZAT2   <----------DOF2              <--   aagaaaaattggatggtcctccttcaatgctctctccccacccaatccaaacccaactgtcttctttctttcttttttcttctttctaatttgatatttt  17827100                                                                     <------MYB83                                                                     <---------ANAC58                                                                     <------MYB46(1)                                                                     <---------ANAC46                                                                     <---------ANAC55(1)                                                                     <---------ANAC58                                                                    --------->MYB59                                                                    --------->MYB111(1)                                                            ---------->DOF2                                                          --------->AHL20(2)                                        ------->TEIL      <---------AHL20(2)                                >>>>>>>>>RAP2.2       <---------AHL20(2)                             --------->WOX13(1)       --------->AHL20(2)            --------->WOX13(1)  --------->YAB1       --------->AHL20(2) ---------GT1 <---------ATHB12  --------->TOE2(3)    <---------AHL20(2)--------->ALFIN1             -   ctaccacttaattccaatcaatttcaaatttcaatctaaatgtatgcatatagaatttaattaaaagaattaggtgtgtgatatttgagaaaatgttaga  17827200                                                                 --------->HSFB2a(1)                                                               ------>MYB83                                                             <---------MYB46(2)                                                             --------->AtMYB61                                               ----------->GT1 ------>MYB46(1)                                --------->HSFB2a(2)          <---------MYB59                          ---------->ID1 <---------ZAT14     --------->MYB46(3)                      <----------DOF2    --------->ZAT14     <---------MYB111(1)           <---------AHL20(2)              <----------DOF2   <---------HSFB2a(2)          <---------MYB111(2)           --------->AHL20(2) -------->MYB52(1)<----------DOF2    --------->ZAT6        -------->P                    <-----------TBP   agtaatggtccatgttctttctttctttttccttctataacacttcagtttgaaaaaaaactaccaaaccttctgttttctgcaaatgggtttttaaata  17827300                                                                               <---------ANAC46                                                                             --------->ZAT14                           --------->AHL20(2)                           --------->At4g35610                           --------->YAB1                               <---------At4g35610                          --------->ICU4                               ----------->RAV1(1)               ------>ZmHOX2a(1)*TSS                              ---------->DOF2<---------------AtSPL8              <---------------AGL15                              <---------REM1(1)              --------------->AGL15                          --------->DAG2  <---------ZAT14       --  ---------->DOF2  ---------->DOF2--------->AtMYB61         ---------->DOF2 <---------MYB52(1)  -----   cttccaaagaaatattcctctaaaagaaattataaaccaaaacagaaaccaaaaacaaaaaataaagttgaagcagcagttaagtggtactgagataata  17827400                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                <--------HAHB4                                       <---------ICU4                           <---------ICU4                                      <---------YAB1                           <---------YAB1        <----------DOF2               --------->ICU4                           --------->ICU4     --------->ARR11(3)       --------->ZAT6                         <----------DOF2     <---------ARR11(3)     <-----------GT1              <---------ALFIN1    --------->YAB1   ------- ------->YAB1              --------->AHL20(2)<---------At4g35610 <----------DOF2--------->ATHB51 <--- ---->YAB1        <---------ATHB12  --------->YAB1      ------>ZmHOX2a(1)   <---------YAB1    -------   agaatagtatctttaggccaatgaacaaattaactctctcataattcatcttcccatcctcacttctctttctttctgatcataattaatcttgctaagc  17827500                                                              <---------YAB1                                                            --------->ATHB12                                                            --------->ATHB51                                                            -------->ATHB1                                                            <---------ICU4                                                           <---------AHL20(2)                                                           --------->AHL20(2)              --------->ATHB12                             <---------ATHB51             <---------YAB1                            --------->YAB1      <---------YAB1   <----------DOF2                 --------->AHL20(2)               <-----------GT1    ----------->GT1    <---------DAG2                 <---------ATHB12             ------>ZmHOX2a(1) -->ANAC58  <---------TOE2(3)                       --------->WOX13(1)           <---------ICU4 --------RAV1(2)  <-----------GT1               <-----------GT1  <---------TOE2(3)--------->TOE2(3) -->ANAC58 --------->YAB1                   <----------DOF2--------->ICU4   <---------MYB52(1)   <---   caggtatggttattgatgatttacacttttttttaaaagtttcttccttttctccaatcaaattattagggttcttcagttaatccttataaaccatttc  17827600                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                      <---------ANAC46                                                                                    <------MYB46(1)                                                                                    <---------MYB46(3)                           <---------ARR14(2)                                       <------MYB83                           --------->ARR14(2)                                      --------->ALFIN1                          <------ZmHOX2a(1)                                        <---------DEAR3(1)                      ---------->DOF2                                 --------->HSFB2a(2)                   --------->ZAT18                         --------->ZAT2          <---------AtMYB61                <---------ANAC46                           <---------ZAT2       --------->MYB55(2)                <---------ANAC58              <---------ANAC46        <---------HSFB2a(2)          --------->ALFIN1===============HOX2a_HOX2a       --------->At4g35610  <---------MYB46(3) -------DOF2    <---------ANAC58  ------>ZmHOX2a(2)        <---------At4g35610 <---------ANAC46   ttttaatccaaggtgtttgagtgcaaaaggatttgatctatttctcttgtgtttatacttcagctagggcttatagaaatggagggtggtgcgagtaatg  17827700                                                                               <---------DAG2                                                                  --------->ARR14(2)                                                                  ------->TEIL <----------DOF2                    <---------ARR14(2)            <---------ARR14(2) <-----------HVH21           <---                    --------->ARR14(2)           <------ZmHOX2a(1)<---------ARR14(2)        ---------         --------->At4g35610               ---------->DOF2--------->ZAT6 --------->O2       ---------         <---------At4g35610        --------->CCA1(2)    --------->ZAT18 --------->ANAC58   ---------  --------->At4g35610--------->CCA1(2) <---------ZAT6    <---------ZAT14 --------->ANAC58--------->ANAC46   aagtagcagagagcagcaagaagatagggagagggaagatagagataaagaggatagagaacactacgaatcgtcaagtcactttctgcaaacgacgcaa  17827800  Previous    Next  AGI:  At2g42830.1    Description:  SHP2 (SHATTERPROOF 2); transcription factor. Identical to Agamous-like MADS-box protein AGL5 (AGL5) [Arabidopsis Thaliana] (GB:P29385;GB:A0JQ83;GB:Q84WG7;GB:Q9SJH3); similar to SHP1 (SHATTERPROOF 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G58780.1); similar to SHATTERPROOF2 [Arabidopsis lyrata subsp. petraea] (GB:AAU82080.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 17827332    to: 17831090    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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