Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <--------P                  <---------ANAC58                  <---------ANAC58      ------>ZmHOX2a(2)           ===================================HOX2a_HOX2a           ====================================HOX2a_HOX2a           --------------->AGL15       <------ZmHOX2a(2)           <---------------AGL15      <---------ARR11(3)           ------>ZmHOX2a(1)--------->DOF5.7(2)                                               <------          --------->TOE2(3) --------->At5g28300--------->At4g35610                   <---------ANAC58         <-----------------AGL1       --------->ARR11(3)                             <---------ANAC58         <-----------------AGL2       <---------ARR14(2)                             <---------ANAC55(1)         ----------------->AGL1       --------->ARR14(2)                             <---------ANAC46         <-----------------AG <---------DOF5.7(2)                                   <------NtERF2         <-----------------AGL3      <------ZmHOX2a(1)                            --------->ARR14(2)       --------->ARR14(2) --------->ANAC58     <---------At4g35610               <------ZmHOX2a(1)---       <---------ARR14(2) --------->ANAC58   --------->REM1(1)                   ==================== --------->ANAC46--------->MYB59    --------->HSFC1(2)                   ===============HOX2a_HOX2a<- --->ZAT14--------------->AGL15     <---------HSFB2a(1)                  <------ZmHOX2a(2)   -------- ---ZAT6 ----------------->AG --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       -------- ---AtSPL8<---------------AGL15     --------->HSFB2a(1)                 --------->ARR11(3)   -------- ---AtSPL3<-----------------AGL1    <---------HSFC1(2)                  <---------ARR11(3)   --------   tctcagccatttcctcaattgggtagccacggtaacgaaggatcccttcatctccatcgatgtaagaaatcgaagatcgaacaggagccgtgttcaagta  17812700                                                                           <---------ARR14(2)                                                                 ----------->RAV1(1)     ----------->GT1                                          --------->ANAC46     ------>ZmHOX2a(2)                                        <---------ANAC55(2)   --------->ARR14(2)                             --------->ANAC58    --------->ANAC58 ---MYB52(2)                               <---------ARR14(2) --------->ANAC58    --------->At4g35610 -------->RAV1(2)                    <-----------HVH21        --------->ANAC55(1) --------->ZAT2 ===========HOX2a_HOX2a              <-----------TGA1         --------->ANAC58    <---------At4g35610 --------LBD16                      --------->O2  --------->ANAC46    --------->ANAC58 ->ANAC58                           --------->bZIP60(2)--------->ANAC58    --------->ARR14(2) ->ANAC58                           --------->ANAC46   --------->ANAC58    <---------GLK1(2) ->ANAC46                          --------->LBD16--------->ANAC58  ---------->DOF2          -------- ->ANAC55(2)             ---------->ID1    --------->ARR14(2) --------->ANAC55(2) <---------ZAT2   --   acctggatcgtataacttaagccccttgtcttccttccccgtcactatctgcaagccaaacaacacgcaacaaagcaaattctcagctcaaaatcccaca  17812800                                                                    ----------->RAV1(2)        <-----                                                             --------->SPL7           <---------AHL20(2)                                                          ------->GAMYB               <---------YAB1<                                                         --------------->AtSPL3   <---------DAG2    <                                                         --------------->AtSPL8   <----------DOF2   -                                   <----------DOF2     --------->MYB52(1)      <---------ARR14(2) <--                                  --------->TOE2(3)    <---------DOF5.7(2)     --------->ARR14(2)----          ----------->GT1      <-----------GT1         <-----------GT1       --------->LBD16 <-------    <------ZmHOX2a(1)     ----------->GT1            --------->DOF5.7(2)   <---------LBD16<---------ICU4 --->RAV1(1)           --------->DAG2               <----------DOF2 --------->At4g35610   <---------AHL20(2) ------->ATHB12       ---------->DOF2         --------->MYB52(1)    <---------At4g35610   --------->AHL20(2)   gtgataggaaaatggtcatttagaaaaagggttaaacctttttgaaatcaacggctttaacggtaccatcatctgagaccggaactttataattttttcc  17812900                                                                         --------->DEAR3(1)                                                                         <---------ALFIN1                                                                     --------->ZAT18                                                                     <-------TEIL                                                                     <---------ZAT18                                                                   <-------PIF5                                                                  <---------ANAC46                                                                  <---------O2                                                                  --------->TGA1a                                                                  --------->O2                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                 <------NtERF2                                                                ------>NtERF2                                                               --------->RAP2.3(3)                                                               ----------->HVH21                                                               --------->DEAR3(1)                                                               --------->At1g77200                                                               --------->DREB2C(2)                                                              --------->RAP2.3(1)                                                              --------->DEAR3(2)                                                              --------->ERF1                                                              --------->ATERF1(1)                                                              --------->ORA47(2)        --------->DEAR3(1)                                   --------->LBD16     --------->MYB52(2)                         ----------->RAV1(1)------->PIF5    --------->SPL7                             ----------->HVH21<---------DDF1    <-------TEIL                    <------ZmHOX2a(2)        --------->At4g35610 <---------ANAC58                   --------->CCA1(2)        ------>NtERF2 <---------ANAC58                  <---------ARR11(3)      --------->MYB46(3) ----LBD16    <------ZmHOX2a(2)    --------->AGP1 <---------ALFIN1<---------TGA1a -------TEIL <---------ARR14(2)    --------->ARR14(2)    <---------ARR14(2)                      ---- ---------ZAT18------>ZmHOX2a(2)   <---------ARR14(2)    --------->ARR14(2)                  -------- -------->ABI4(2)                  --------->ARR11(3)   <---------CCA1(2)--------->AtMYB61   -------- -------MYB52(1)      --------->ZAT14        --------->ALFIN1<---------ATERF1(1)             <------- ----->LBD16 --------->ARR14(2)=============================================bZIP_DOF------>ZmHOX2a(2) ----GT1<---------DEAR3(1)     ---------->DOF2--------->SPL7--------->ANAC46        =================   ggtgcgttcgtcgacgatcgtcagtgttcccttcaaagatccaagcggtgcgacactcgtatccgccgacgtgcaccatcgctcgatcgctggagaatcc  17813000                                                                      ------->GAMYB                                                                      --------->TOE2(3)                                                                      --------->YAB1                                                                     --------->MYB46(3)                                                                --------->AtLEC2                                                           <-----------GT1 -->ZmHOX2a(1)                                           --------->ARR11(3) ->ARR14(2)                            <---------ZAT2    <---------ARR11(3) ->GLK1(2)                             --------->ZAT2   --------->GLK1(1)               ------------- --ARR14(2)                   --------->At4g35610       <---------GLK1(1)           ---------->DOF2>> ===HOX2a_HOX2a               <---------At4g35610       <---------CCA1(2)   --------->YAB1 <------ZmHOX2a(1)   tgttttccttccgataaatgacctgagagaacagctaatcgagctcgaactctctctgatatctccattcaaccaaaatcaaaattcaaagaaggagaga  17813100                                                               <---------ANAC58                                                           <-------MYC2                                                           ------->MYC2                                                           ------->MYC3                                                           ------->MYC4                             <-----------GT1               <-------MYC4                             <                          *TSS                             -------->ABF1                            <                        <---------YAB1                     <-------MYC3                             -                      --------->ATHB51                    <---------TGA1a                           -                      -------->ATHB1                      --------->O2               <------------CBF                      --------->ATHB12                    --------->ANAC55(2)    ====================                      <---------ICU4                      --------->TGA1a   <-----------HVH21  ------     ---------->DOF2 --------->AHL20(2)        <---------MYB52(1)        --------->ZAT14       <-----  >>>>>>>>>TBF1      <---------AHL20(2)       --------->TOE2(3)<---------ANAC58  <------ZmHOX2a(1)  < ----------->ANAC81  <---------ATHB51 <-----------GT1     <---------O2----------->RAV1(2)  --------->ZAT6 >>>>>>>TBF1         --------->ICU4<---------ICU4         <---------ANAC55(2) <-----------RAV1(2)   =   agaagaagaaagggagcgaagaaattattagaaaccattcttactcttcgttaatataacacgtgtcttatcccctgcggtcaggagtattgaacagtat  17813200           <------ZmHOX2a(2) <-------MYC4 <-------MYC2 ------->MYC3               <---------GLK1(1) ------->MYC4               --------->GLK1(1) <-------MYC3        <---------ARR14(2) ------->MYC2        --------->ARR11(3) ------->PIF5        <---------ARR11(3) <-------PIF5       --------->GLK1(1)                   ------>MYB46(1) ---------TGA1a     <---------CCA1(2)        --------->TOE2(3) ---------O2        <---------RVE1(1)     --------->ANAC58 -------->TGA1a     <---------GLK1(1)     --------->ANAC58       ----------->HVH21           <------- -------->O2       --------->ARR14(2)    --------->SPL7 ------>MYB83                         <------- =================HOX2a_HOX2a          <---------SPL7 <---------MYB59         ------>ZmHOX2a(2)     - --->ARR14(2) --------->MYB52(1)    ------->GAMYB    <-----------------AGL1 --------->ARR11(3)    --- ----ARR14(2)----------->HVH21   --------->MYB52(1)  --------->ANAC46       <---------ARR11(3)  <---- ---------ANAC46   <---------ARR14(2) <---------ANAC46--------->MYB46(3)    <-----------ARR10-------- ===========================================MYC_MYB<-----------GT1--------->MYB52(1)         --------   ccacgtgtatgcgatctaacggatatcttgatatccaacggcgtaagccttattgacccaacttggactaacggtgatgatcttctccatctctaagctg  17813300                     <---------YAB1                ------>MYB46(1)                ------>MYB83               <---------ALFIN1           --------->TCP20           --------->TCP15(1)           <---------PCF2          <---------TCP23      <-----------RAV1(1)      <---------ANAC46--------->ZAT6                                                      <---------YAB1 --ZAT2   <---------TCP15(2)                                                           --------->ICU4 --At4g35610<---------TCP20                                                       <---------ANAC55(2) -------->ICU4--------->MYB46(3)                                                  --------->ANAC58 ------>YAB1<---------TCP15(1)                      ------>ZmHOX2a(1)             --------->ANAC58  < -------HVH21--------->TCP15(2)                <----------DOF2                    --------->ANAC46  < ->ZAT2 --------->ALFIN1                      <---------ANAC58                    --------->ANAC55(2) ->At4g35610--------->PCF2                    <---------ANAC58              <---------WOX13(1)  <----   tcagaattatgtgggacccacttatcagtattatctagttagtcaattgctttcctcgatttgctaaatatcaattcgattgctacgcaatgctgaatgg  17813400                                                            <---------AHL20(2)                                                        <---------DAG2                                                        <----------DOF2                                                 --------->ZAT14 ------NtERF2                              ----------->RAV1(1)                             <---------DAG2 ---------RAP2.6(3)               <----------DOF2<---------ZAT14                --------->ARR11(1) ------ID1                   <-------TEIL  --------->MYB52(1)         <----------DOF2      <---------   gccgaattgtcttaatatgggcttctgtatattcatctttaggcccaacagtataccactttttatttgggccttttttgttgatacggctcgctttacc  17813500                <-------TEIL           ------>MYB83           ------>MYB46(1)           ----------->RAV1(1)         ------->GAMYB                                                           <---------ANAC46         --------->MYB46(3)                       <---------AHL20(2)             <---------ANAC58        --------->ANAC46                          --------->AHL20(2)             <---------ANAC58       ------>MYB83                            --------->AHL20(2)          ------->TEIL       -------->P                              <---------AHL20(2)    >>>>>>>>>>AGL20     <---------MYB111(1)                      --------->AHL20(2)     >>>>>>>>>>AGL22     --------->AtMYB61                   --------->TOE2(3)        <---------------AGL15    --------->DEAR3(2)                 <---------ARR11(3)        <-----------------AGL3    --------->MYB46(3)                 --------->ARR11(3)        <-----------------AGL2    <---------MYB52(2)         <---------YAB1<---------YAB1  ---------->DOF2<-----------RAV1(1) -DOF2 ------>MYB46(1)<-----------GT1 --------->GLK1(1)  ------->TEIL>>>>>>>>>>AGL24   atcggaaccaacccaacattcatttttcgaactatgactgaaatcttattaaaaaaatgaatgtaaagctaaatatggatgttgcgttcaaaataaaact  17813600  Previous    Next  AGI:  At2g42790.1    Description:  CSY3 (CITRATE SYNTHASE 3); citrate (SI)-synthase. Identical to Citrate synthase 3, peroxisomal precursor (CSY3) [Arabidopsis Thaliana] (GB:Q9SJH7;GB:Q56YQ7); similar to CSY2 (CITRATE SYNTHASE 2), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58750.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); similar to citrate synthase [Oryza sativa (japonica cultivar-group)] (GB:ABL98204.1); conta Range:  from: 17808548    to: 17813126    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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