Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     --------->DAG2 ----------RAV1(2) ->PIF5 --PIF5 ------HVH21 -->ANAC58 -->ANAC46 ---O2  <---------AtLEC2                                           --------->LBD16 -->O2 <-------TEIL  <------MYB83                                 <-----------RAV1(2) -->TGA1a            <------MYB46(1)      ---------->DOF2         --------->HSFB2a(2) -->ANAC58          <---------AtMYB61   <---------MYB52(2)        <---------HSFB2a(2) -->bZIP60(2)      <--------P      ----------->GT1      --------->AHL20(2) ---TGA1a     <-------TEIL  ----------->RAV1(1)        <---------ATHB12           <------ZmHOX2a(1)   cgcagaaggtgcaaggctcgtgttggtatccaacacagagtaactaaagacgatgcaatgaaatggttccaggtgaaatacgaaggagtcattctcaaca  17800000                                                                                        --------->YAB1                                                                                        --------->TOE2(3)                                                                                     <---------CCA1(2)                                                                             <---------ANAC58   --------->LBD16                    <----------DOF2               <---------MYB52(1)------->TEIL <-  <---------HSFB2a(2)           ------>ZmHOX2a(1) --------->HSFB2a(2)        <---------ANAC58   -----  --------->HSFB2a(2)        ------>ZmHOX2a(1)    <---------HSFB2a(2)      <-----------GT1    <------   agtcccagaacatcactggctaaaacaattcctcctaactctttcttctgttttagaaaaccctgtctcagttttgtttacttgtctgaatcttaatctt  17800100                                                                                                <----                                                                                           <---------REM1(1)                                                                                         ============                                                                                         <-------GAMYB                                                                                        --------->MYB55(2)                                                                                        <---------MYB46(3)                                                                                        --------->MYB111(2)                                                                                        --------->MYB111(1)                                                                                        --------->MYB52(2)                                                                                        --------->MYB46(2)                                                                                       <--------P                                                                                     <------NtERF2                                                              --------->ANAC58      --------->MYB55(2)             -------->ATHB1                       <---------ANAC58                  <---------MYB46(3)             --------->ATHB12                     <---------ANAC58                 <---------ANAC46             --------->ATHB51                     <---------ANAC55(1)              <---------ANAC58 -  <---------DAG2                           <---------MYB59    --------->ANAC58     <---------ANAC58--  <----------DOF2   <----------DOF2      --------->GLK1(2) --------->ARR14(2)     <---------LBD16 --- ----------GT1     <---------ANAC58   --------->ANAC55(2)  <---------ARR14(2)     <<<<<<<<<E2Fc <---- ---------->AtSPL8 <---------ANAC58 <---------AHL20(2)    <------ZmHOX2a(1)       <<<<<<<<<E2Fd <---- ---ICU4    <---------YAB1     <---------MYB52(1) <---------ANAC46   --------->CCA1(2)<---------MYB52(1)   tgtactttatatgcattattggctttagtttcagttatttaagtatctaatttcgtgtgaggataagcaagataagaaaattttggcgggtagttgaagc  17800200                                       <---------DEAR3(1)                                      --------->SPL7                                      --------->RAP2.6(3)                                    ----------->HVH21                                    <---------SPL7                                   --------->ANAC58                                   <---------MYB52(2)                                  <---------LBD16                              ----------->HVH21                             <-------MYC2                             ------->MYC4                             <-------MYC4                             <-------PIF4                             ------->PIF5                             <-------MYC3                             ------->MYC3                             ------->MYC2                             ------->PIF4                             <-------PIF5                                 <---------MYB52(1)                            --------->O2                                 ------>NtERF2                            <---------ANAC55(2)                      ================================HOX2a_HOX2a                            ===================================bZIP_DOF--------->RAP2.3(1)                            <---------TGA1a                          ------>ZmHOX2a(2)          --------->AHL20(2)--------->TGA1a                 <---------ARR14(2)          <---------AHL20(2)--------->ANAC55(2)             --------->ARR14(2) --------->REM1(2)          <---------O2                  --------->DEAR3(1)              --------->GLK1(1) -----ANAC46              <------------OsbHLH66  --------->ANAC58   =================================HOX2a_HOX2a =====================================MYC_MYB    --------->ANAC58   <------ZmHOX2a(2)     <---------GLK1(1) -------->ALFIN1        <-----------HVH21       <---------ZAT18    --------->ARR14(2)    <---------GLK1(2) ------->REM1(2)       ----------->HVH21        --------->ZAT18  --------->DEAR3(1)      <---------ARR14(2) ------>ALFIN1       <---------At4g35610     --------->ANAC58 ------>ZmHOX2a(2)          --------->ARR14(2) -----ANAC58         --------->At4g35610     --------->ANAC58<------ZmHOX2a(2)  <-------TEIL  ------>ZmHOX2a(1) -----ANAC58         --------->ZAT2--------->ANAC58 <----------DOF2<---------ARR14(2)<---------LBD16   gtgtggagacatataaatccactagctgacacgtgccacggacggctaagcacgctttcgccgatcgccgatcgccgctagattcatctcggattcctcc  17800300                             --------->TGA2(2)                            <-----------TGA1                            <-----------HVH21                           --------->ANAC58                           --------->ANAC46                           --------->bZIP60(2)                                      *TSS                           <---------bZIP60(1)                                     <---------AHL20(2)                           --------->O2                                         --------->TOE2(3)                           --------->bZIP60(1)                                --------->AHL20(1)                    <---------ANAC58                                          <---------AHL20(1)                    <---------ANAC58            --------->ANAC46           --------->AHL20(2)                 <---------CCA1(2)              --------->ANAC58          --------->YAB1          <---------TOE1(2)<---------O2         --------->ANAC58          --------->AHL20(2)        ----------->RAV1(2)<<<<<<<<<<AtbZIP1   --------->SPL7          --------->YAB1             <--   <---------HSFC1(2)      --------->TGA1a   <---------SPL7          --------->AHL20(2)    <---------AHL20(2)   --------->HSFC1(2)      --------->ANAC58 --------->TOE2(1)        --------->AHL20(1)    --------->AHL20(2)   --------->At4g35610     <---------TGA1a  --------->TOE1(1)       --------->YAB1--------->AHL20(2)   aaataagcttccctggttcttatcttgccacgtcagcatttctccctcgtacgccttaaattcttcacaaaaataataaaaatattaattcaaataaatg  17800400                                                              <----------DOF2                                                             ------>ZmHOX2a(2)                                                            <---------RVE1(1)                                                            <------ZmHOX2a(2)                                                           <---------ARR14(2)                                                           --------->ARR11(3)                                                           --------->ARR14(2)                                                           <---------ARR11(1)                                                           <---------ARR11(3)                                                      <-----------HVH21                                        ===============HOX2a_HOX2a                     <---------RVE1(1)                                        ------>ZmHOX2a(2) <---------CCA1(2)           --------->ARR14(2)                                       <------ZmHOX2a(2)--------->ETT(1)              <---------GLK1(2)                                       ================HOX2a_HOX2a                    <---------ARR14(2)                            <---------AHL20(2)     ------>ZmHOX2a(2)  <---------ARR14(2)                           <---------AHL20(1)    <---------ARR14(2)   --------->ARR14(2)         ------>ZmHOX2a(1) --------->AHL20(2)    --------->ARR14(2)   <---------ARR11(3)         =====================================HOX2a_HOX2a <---------ARR14(1)        ----------->ARR10        --------->TOE2(2)  --------->AHL20(1)   <------ZmHOX2a(1)     --------->ARR11(3)    ---------        --------->TOE1(2) --------->AHL20(2)    ====================HOX2a_HOX2a    <------NtERF2 -----TEIL<---------TOE1(2)<---------AHL20(2)   ===================HOX2a_HOX2a   <---------ANAC46   <   ttcatcttctcctacgaatgaaattgaaattaatttgagcgatcggaacaggatcgggtcggatcttttgaagttcttcaatggcgcagatactttcccc  17800500                                                             <---------DEAR3(1)                                                             <------NtERF2                                                            ------>NtERF2                                                            <------NtERF2                                                            --------->LBD16                                                           --------->DEAR3(1)                                                          <------NtERF2                                                          <---------LBD16                                                          --------->ATERF1(1)                                                         <---------RAP2.3(1)                                                        --------->DEAR3(1)                                                        <---------DEAR3(1)                                                       --------->ATERF1(1)                       --------->LBD16                <-----------HVH21                      <---------HSFC1(1)              <---------ATERF1(1)           <----------DOF2                           <---------ANAC58          ------>ZmHOX2a(2)                          <---------ANAC58         <------ZmHOX2a(2)                       --------->ZAT2         <---------RVE1(1)                       --------->At4g35610        --------->ARR14(2)                       <---------At4g35610        --------->ARR11(3)            --------->At4g35610------>NtERF2         --------->MYB52(1)        <---------ARR14(2)     <---------At4g35610  <-------TEIL      <------NtERF2        <---------ARR11(3)     --------->At4g35610 --------->ALFIN1 <---------DEAR3(1)        ------->TEIL  --------->HSFC1(1)       <-----------RAV1(2) <---------HSFB2a(2)       <---------CCA1(2) <-----------ARR10    <------ZmHOX2a(2) <-----------ARR10    <---------LBD16   <---------HSFB2a(2)    <---------ARR14(2) --------->ARR14(2)  <---------SPL7   <---------ARR14(2) <---------At4g35610<---------ATERF1(1)  --------->AtMYB61  ---- -------------->TaNAC69(2)     <---------ZAT2<-----------HVH21<---------MYB46(3)     --------->ABI4(2) ---------------AtSPL3--------->HSFB2a(2)    --------->ARR14(2) <---------ARR14(2) <---------MYB52(1)   tgtttgtacggatcttttgaagttccagaactcagctcttagctccagatcaggtgcgtcgccgcggttctcggcgaagaccaccggtgcttcttcatct  17800600                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                             <-------                    ---------->DOF2                                                         ---------                  --------->ANAC58                                   --------->HSFC1(2)     <--------                  --------->ANAC58                                   <---------HSFC1(2)     <--------              --------->ANAC58                                       <---------HSFB2a(1)    <--------              --------->ANAC58                                       --------->HSFB2a(1)    <--------             --------->SPL7                                       <------ZmHOX2a(1)      ----------->HVH21           <---------SPL7                                       <---------TOE2(3)       <-----------HVH21     -------->P  <---------TOE2(2)                          --------->At4g35610        --------->LBD16 ----------->AtSPL8<------ZmHOX2a(1)     --------->YAB1     <---------At4g35610<----------DOF2  -----   tggtacttacctcggtacgcaggaaagaggcgaaccgattcaatcggaagattgagagttgcaactgaggatgcttcttctctttccaccggtgatgtcg  17800700  <---------ICU4  --------->YAB1  --------->ATHB12 <---------ATHB12 --------->ICU4 <---------YAB1 ------>DEAR3(1)         --------->ANAC58 ---NtERF2         --------->TOE1(1) ------------------WRI1  --------->ANAC58 ----HVH21        <---------LBD16 >bZIP60(1)       <---------HSFB2a(2) -bZIP60(2)       --------->HSFB2a(2) -REM1(1)      <---------MYB52(1) ---RAV1(1)   <---------RAP2.6(3)                                                         <---------AHL20(2) -bZIP60(1)  <---------ANAC58                                      <---------ARR14(2)--------->ICU4 ->NtERF2    <---------ANAC58                 --------->WOX13(1)   --------->ARR14(2)<---------YAB1   ccgatgattactatgccgttctcggactcgtaagaaccaaggctatttcaatccgatttgatatatgcatatagggattttgaagtgatgattttttttt  17800800                     <---------WOX13(1)                   --------->ATHB12                  <---------YAB1              <---------ANAC46              <---------ANAC58                                                       <----------DOF2              <---------ANAC58                                                  <-------TEIL          <---------ANAC58                                           <---------MYB46(3)          <---------ANAC58          <---------CCA1(2)                <---------REM1(1)   ---------->ID1   ttggtttaagttgtttgcttatgattgaaacttcttgtgtatcatggaaaaatactctgcatttcatatggttgtagctagattcatctttgtcgaaatt  17800900  Previous    Next  AGI:  At2g42740.1    Description:  RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome. Identical to 60S ribosomal protein L11-1 (RPL11A) [Arabidopsis Thaliana] (GB:P42795;GB:Q9SJI2); similar to 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana] (TAIR:AT3G58700.1); similar to 60S ribosomal protein L11 (RPL11D) [Arabidopsis thaliana] (TAIR:AT5G45775.2); similar to RPL16B (ribosomal protein L16B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G18730.1); similar to unknown [Picea sitchensis] (GB:ABK22492.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132) Range:  from: 17798806    to: 17800159    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g42750.1    Description:  DNAJ heat shock N-terminal domain-containing protein. similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69912.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain 3Fe-4S ferredoxin; (InterPro:IPR001080); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain 4Fe-4S ferredoxin, iron-sulphur binding; (InterPro:IPR001450) Range:  from: 17800384    to: 17802757    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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