Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ------>ZmHOX2a(1)                                           ---------->ID1                                       --------->At4g35610      <---------TOE2(2)                <---------At4g35610      --------->MYB59                <---------ANAC58                                  <----------DOF2      <---------TOE2(3)              <---------ANAC58 <----------DOF2          <---------YAB1      <---------TOE1(2)      ------>ZmHOX2a(2)<----------DOF2 <-----------RAV1(1)   <---------ALFIN1    <---------MYB52(1)       ========================HOX2a_HOX2a          <---------At4g35610   ttgtctcttaggtagtctattgctcaattgatcgaattggcttctgtccttttctcctttgtttttgttgtttgagagcttatcatccactttccataga  17792100                                        <---------ANAC58                 --------->CCA1(2)                                        <---------ANAC58          ------>ZmHOX2a(1)                       --------->AHL20(2)                   <---------MYB52(2)         --------->ANAC46                    --------->YAB1      <---------ANAC46 --------->REM1(1)            --------->MYB46(3)             --------->AHL20(2) ---------->ID1      --------->ANAC46   <---------At4g35610 --------->GLK1(2)  <-----------HVH21<---------YAB1<---------ZAT18<-----------GT1   <----------DOF2 --------->MYB46(3)   ggcccttcacttgaataaaacatcataaatttttgtccccttgtgtgttttttcccgttacaactatcctttcagataagagtaatcacccacaatctat  17792200                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                   ------->TEIL                                                                              --------->YAB1                  --------->ATHB12                                            -------->HAHB4               --------->YAB1                               --------->HSFB2a(2) <---------YAB1               <---------ICU4                         ------>NtERF2           <---------ICU4              <---------ATHB12                       --------->ANAC58        <---------ATHB51              <---------ATHB51                       --------->ANAC46        --------->ICU4              --------->ICU4       <---------YAB1    --------->ANAC58     --------->AHL20(2)            --------->WOX13(1)--------->YAB1         <---------ALFIN1     <---------AHL20(2)      --------->ALFIN1       <-------TEIL          <---------ALFIN1  <---------AHL20(2)   <---------ANAC58 ---------->DOF2 <---------YAB1  <---------ICU4    <---------ATERF1(1)   --------->AHL20(2)   aaccaaagttgtggcaattatgatttctagcttcataatcaatgtaatgaagcccacgccttcgcgagtgttttatttaattatgaaccgtgtcgtttag  17792300                   --------->ICU4                   <---------MYB52(1)      <---------ANAC46                                      <---                 ----------->GT1         ------>NtERF2                                          -----               ------>NtERF2----------->RAV1(1)                                                <-----              <---------ARR14(2)        --------->DEAR3(1)                                     <-----              --------->ARR14(2)   ------->TEIL                     <---------MYB52(1) --------->ANAC46         ------->TEIL       <---------ALFIN1       --------->YAB1   <------NtERF2      --------->ANAC58  <---------ALFIN1<---------RAP2.6(3)   <---------DEAR3(1)         ------>NtERF2       --------->ANAC58  ----------->RAV1(1)      <---------ZAT18<------NtERF2           --------->DEAR3(1)<---------ZAT18 <---------ZAT18<------NtERF2      --------->ARR14(2)     --------->ANAC46          --------->ZAT18   tagcccacatgaatcggagccgttattagcccacatgaatcggcgtcgtttaatagtcatacgactcgccgtcgttttagtagtagcacacgactaggcg  17792400                                                                                        -------------                                                                                        --------->TOE2(3)                                                                                        --------->TOE1(3)                                                                         <---------LBD16-------------        <---------YAB1             --------->ZAT14            <---------O2    --------->GLK1(1)     <---------YAB1                <---------ZAT14            --------->O2    <---------WOX13(1)     <---------AHL20(2)         <------------CBF              ====================bZIP_DOF <----------DOF2              <---------YAB1                  --------->TGA1a<------------CBF ---NtERF2                <----------DOF2 <-----------HVH21   <---------TGA1a--------->ARR14(2) ->NtERF2--------->AHL20(2)   <---------AHL20(2) ----------------------->TaNAC69(2)    ============== ----ANAC58               ==============================================bZIP_DOF       <------------- ----ANAC58     <---------HSFB2a(2)--------->ZAT18 <-----------GT1     <----------DOF2*TSS          <   cgtcttttttattatatactcgaagagtctttttaattgcactgcatcacatgttacattttcgacgtctcttctttcggattgccaaaaccctaattgg  17792500                                        <-----------RAV1(1)                                    <------NtERF2                                   <---------ATERF1(1)                                   ------>NtERF2                                   --------->ABI4(1)                                  <---------ATERF1(2)                                  --------->ATERF1(2)                                  --------->RAP2.3(2)                                  --------->RAP2.6(2)                                  <---------ALFIN1                                  --------->DREB2C(2)                                  --------->RRTF1(3)                                 --------->ORA47(2)                                 --------->ERF1                                 --------->RAP2.3(1)                                 <------NtERF2                                 --------->ATERF1(1)                                 --------->RRTF1(1)                                 --------->DEAR4(2)                                 --------->RAP2.6(1)                                <---------DEAR4(2)                                <---------RAP2.3(1)                                <---------DREB2C(1)                                <---------ATERF1(1)                                --------->At4g35610                                --------->DREB2C(1)                                ------>NtERF2                               --------->RAP2.6(2)                               <---------DEAR3(1)                               --------->RAP2.3(2)                               --------->DEAR3(1)                               --------->ANAC46                              --------->ERF1                             <---------ATERF1(1)                  <---------ANAC58--------->RRTF1(2)                  <---------ANAC58--------->DEAR3(1)                                             <<<<                  <---------ANAC46--------->RAP2.3(3)                                         ------- ---->AG       <----------DOF2--------->RAP2.3(1)                                   <---------ANAC58 ---->AGL1  --------->ARR11(3)--------->DEAR3(2)                         <---------ANAC58   <-------- =================MADS_MADS  <---------At4g35610                         <---------ANAC58 --------->ZAT6 ----AGL3   <---------ARR11(3)--------->ATERF1(1)    ---------->DOF2 <----------DOF2<---------ANAC46 -----------------AGL3    ---------->DOF2<-------GAMYB          <----------DOF2     <---------ANAC58   ggactgaatttggagagctttcgtgaattgaagccgccgcctctgttgcaattagcaaaggtatctcttttctttgggtatcgatggcttgatcactata  17792600                                                                <---------GLK1(2)                                                          <---------MYB52(1)                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                        <---------ANAC58                                                        <---------ANAC58                                                      ------>NtERF2                       --------->ANAC58             <---------RAP2.6(2)                       --------->ANAC58            <---------At4g35610 <<<<<<<<<<<<<LFY    --------->MYB52(1)            --------->At4g35610  <---------MYB46(3) -->ZAT14        ---------->DOF2                <-------GAMYB ------>ZmHOX2a(1) -YAB1      ----------->GT1  <----------DOF2   <-----------RAV1(1)    <---------At4g35610     -------   gacaatggatggaacagcaaaaagaacgaaactttgaagcttatcaactctgttgctgccgttcctgattctagctgttgaaaatttagttttttgttca  17792700                                                         --------->GLK1(2)                           <---------TOE2(3)            <---------GLK1(2)    <----------DOF2                         <---------ICU4               ----------->ARR10      ------>ZmHOX2a(1)                         -------->HAHB4           --------->At4g35610    <-----------GT1                        <---------YAB1       <-----------GT1            <-----------GT1             <                        <---------ATHB51   <----------DOF2             <---------AHL20(2)           -                        --------->ICU4 <---------At4g35610      <---------At4g35610      ---------->DOF2 -->ZAT14          ----------->GT1     --------->At4g35610      <---------ZAT18        --------->ANAC46   gtctgtgtttgagggtgtttagagtaattatggatagaatcagctctttaccagatgagattcttgagcacattttatcctttctctccacaaaagaggc  17792800                                                                                                   --                                                                     --------->ANAC46     --------->LBD16      --------->TOE2(3)                                              <---------YAB1   --------->ARR14(2)   <-----------GT1       --------->ALFIN1                       --------->ATHB12      --------->GLK1(2) ----------DOF2     <---------TOE1(1)                 <---------ZAT6 --------->ANAC58 <---------ARR14(2) -------------------->WRI1      --------->GLK1(2)  ------>ZmHOX2a(1) --------->ANAC58<---------GLK1(1)   tgctttaacctcatcgctctctacgaggtggaagaatgtgtttgtttttgttcctagtcttcaccttgattacgctagacaacatgaaaatccgagagaa  17792900                                                                    <----------DOF2                                                                   <---------ANAC58                                          --------->ANAC58     <---------ANAC58         <---------ARR11(3)                                          --------->ANAC58     <---------ANAC58         --------->ARR11(3)             <---------ARR14(2)          --------->DAG2       <---------HSFC1(2)<---------At4g35610             --------->ARR14(2)         ---------->DOF2       --------->HSFC1(2)--------->At4g35610        <---------ANAC46               ---------->DOF2  ---------->DOF2      <-------TEIL     ------- <---------WOX13(1)                 --------->YAB1   ------>ZmHOX2a(1) ---------->DOF2 --------->YAB1 ------->ATHB12  ----------->GT1   XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B<---------ANAC58 ---------->DOF2   ttcattgattttgtggattttgtgaatactttgttcaatcggaaaggcaattctcctataaagaagcttgctttaaagattcatctcaaagataatcaat  17793000  Previous    Next  AGI:  At2g42710.1    Description:  ribosomal protein L1 family protein. similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT3G63490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69889.1); contains InterPro domain Ribosomal protein L1, bacterial-type; (InterPro:IPR005878); contains InterPro domain Ribosomal protein L1, 2-layer alpha/beta-sandwich; (InterPro:IPR016094); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 17789385    to: 17792140    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g42720.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At2g42720 [Arabidopsis Thaliana] (GB:Q6DR13;GB:Q8H1M3;GB:Q9SJI4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 17792486    to: 17794498    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version