Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------At4g35610                 --------->O2                        <------------AtMYB77               --------->At4g35610                 <---------O2                      <-----------GT1                 <---------HSFB2a(2)                 --------->At4g35610              <---------YAB1                   --------->HSFB2a(2)               <-----------GT1             <---------AHL20(2)                <---------TOE2(3)             <-----------HVH21         <----------DOF2------->GAMYB          <---------TOE1(3)          ---------->DOF2      <---------REM1(1)--------->YAB1     ------>ZmHOX2a(1)    <---------At4g35610   tttcttcatcacaaaagtcacctcgcattcacgttgtagggctatattttttataactgtctatgtttcctccattgttaaggttttggaagctcaagag  17789000                                                                  ------>NtERF2                                                                 --------->ANAC46                                                                 --------->ANAC58                                                                 --------->ANAC58                                                                 <---------ETT(2)                                                                --------->SPL7                                                               ------>NtERF2                                                           ------->GAMYB                                                          --------->MYB46(3)                                                  --------->HSFC1(2)                                                 <---------ALFIN1----------->HVH21          --------->At4g35610                 --------->ANAC58 <---------ATERF1(1)          <---------At4g35610                 --------->ANAC58--------->DEAR3(1)  <-----------HVH21                        <------ZmHOX2a(1)  ----------->HVH21   <-----------RAV1(1) ----------->HVH21                 --------->ATHB12      -------->P              <---------YAB1   gctgtgtcagagagcggaagaccagacattaacttggttattggaggaacgacacttctaacccccgacgacatgtttgagttattgttgggacaattca  17789100                                                                                                    <                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                            <--------                        <---------MYB59                                                   --------->AHL20(2)                       <---------bZIP60(1)                                                <---------AHL20(2)             --------->AtLEC2                     <---------ANAC46                       <---------AHL20(2)           <---------ANAC58                       <---------ANAC58                       --------->AHL20(2)           <---------ANAC58                 <---------MYB46(3)                        --------->AHL20(2)         --------->ARR11(3)              <-----------RAV1(1)                          <---------AHL20(1)         <---------ARR11(3)        <---------ICU4 <---------ANAC58                    <---------AHL20(2)        <---------CCA1(2)          <---------GLK1(2)----------->GT1                   --------->AHL20(1)        <---------GLK1(1)       --------->YAB1<---------MYB52(1)                     --------->AHL20(2) --------->ICU4        --------->bZIP60(1)<-------GAMYB   --------->TOE2(3)      <---------ATHB12----   gccatttttgatatcttgcaaactgacctcactctcataatctctgttgttagcttgtaacattagaagaaacagaaatacccatgaataaattaatgat  17789200                                                                                                  ---                                                          <---------AHL20(2)                      <--  ----------->GT1                                   <------MYB83                         <---------ARR11(3) ----------->GT1                                    <---------MYB46(3)                   --------->ARR11(3) ---------TOE1(2)                                   <------MYB46(1)       --------->ARR11(3)     <--- ->HAHB4                                            ----------->GT1       <---------GLK1(2)      <--- -->ATHB12                                      --------->ATHB12          <---------ARR11(3)     ---- --YAB1 <---------ARR11(3)                     --------->ICU4   <---------YAB1          --------->CCA1(1) ->ICU4 --------->ARR11(3)                   ---------->DOF2  ----------->GT1           --------->RVE1(1) -TOE2(3)    --------->ANAC46           --------->CCA1(2) --------->AHL20(2)          --------->AHL20(2) -->ZmHOX2a(2)                        --------->CCA1(2)  <---------YAB1  <---------RVE1(1) --------->TOE2(3)   cgaatgttaaaatctacaaaacaatagttccattttcaagagataagaaaagattggttattaattgtgaataagagatttttcaaaaaaaaatctcaaa  17789300     --------->ARR11(3)     <---------ARR11(3)    <---------CCA1(2)  <---------AHL20(2)                                                     ---------->DOF2  --------->AHL20(2)                                                   ------>ZmHOX2a(1) ------>AHL20(2)                                                --------->GLK1(1)     <-----------GT1 -------AHL20(2)                                  ----------->GT1     --------->TOE2(3)          ---- ------AHL20(1)                                   <---------TOE2(3)   --------->TOE1(3)          ---- ------AHL20(2)                              <----------DOF2    <---------GLK1(1)    *TSS  <--------- ----->AHL20(2)   ---------->DOF2       ---------->DOF2     --------->YAB1     --------->LBD16   ----   ttatttatatctttggtccctaaagttttataacatttacagaaaagcttttaagttaaaaatcagaaatctccttaaacccccaaaatcacatttcaca  17789400                                                                    <---------ARR11(3)                                                               <------NtERF2                                                              ------>NtERF2                                                             --------->RAP2.3(3)                                                             --------->RAP2.6(2)                                                             --------->ATERF1(2)                                                             --------->RAP2.3(2)                                                             <---------ATERF1(2)                                                             --------->ANAC46                                                             --------->RRTF1(3)                                                             --------->DREB2C(2)                                       <---------At4g35610   --------->RRTF1(2)                                      ------->TEIL          --------->ERF1                               <---------ZAT2               --------->RAP2.3(1)         ---------->ID1                               <------NtERF2               <---------ATERF1(1)        <---------ANAC58 ----->ANAC58                  --------->At4g35610        <---------DEAR3(1)          <---------ANAC58 ----->ANAC58                  <---------At4g35610     <---------ZAT2             <---------DAG2 --HVH21             <<<<<<<<<<<<<<<<<LFY   ------>ZmHOX2a(1)--------->DEAR3(1)   <----------DOF2 ----->ANAC46   <---------ZAT14--------->ZAT2          --------->ZAT2     <---------ATHB12          -   cgaaaaacctcgagtgagtgaagaaacaatggcagctatgaagctcctactctctcaagctcgccgccaaggtctaatcaaacccttttcgtctccattt  17789500                                                                                                    -                                                                                                  ---                                                                                         --------->GLK1(2)                                                                                         <---------ARR14(2)                                                                             --------->LBD16 --------                                                                           <---------LBD16   --------                                                                   --------->ARR14(2)    ------->TEIL                                                                   <---------ARR14(2)    --------->ARR14(2)           xxxxxxxxxxxxxxxx>smallRNA(i)                      --------->ARR14(2)         <---------ARR14(1) -------->MYB46(3)                                           <---------ARR14(2)         <---------GLK1(2)   caacaaatcccaagactcttctcttcatcttcatcttcatcttcatcttcatcttcatcatccgattcgaatccatctcccgattcaaacgaatctcgca  17789600                                ------>NtERF2     <-------GAMYB              <------NtERF2                                         --------->TOE1(3)    ----------->GT1            --------->RAP2.6(2)                                   --------->HSFC1(2)    <---------MYB46(3)      --------->ANAC46                                         <---------HSFC1(2) ------------>MYB.PH3(1)   --------->SPL7                   ----------->GT1          <---------HSFB2a(1) -------->DAG2           <---------SPL7                   ------->TEIL       <---------LBD16        - ------->DOF2           <---------ANAC58           <---------GLK1(1)        --------->MYB52(1)   ---- ->ANAC58               <---------ANAC58           --------->GLK1(1)       ----------->HVH21    ----- ->ANAC58              --------------->AtSPL3 <------ZmHOX2a(2)           --------->DEAR3(2)    <----   aaaaggctgttacaatcgagccagtatcgtacgcggccaaacccaaggatcagaaatctgaaccgaaaaatgttgaatcgacggagaaccttcagtctcc  17789700                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    =                                                                                                  ---                                                                                             --------           --------->ZAT14                                                            <---------ALFIN1      --------->ZAT14                                                         --------->ALFIN1    ---      <---------ZAT14                                            <---------ANAC58  <---------TCP20<--    --------->At4g35610              ---------->DOF2         <---------MYB52(1) --------->ALFIN1 <---    <---------At4g35610       --------->ARR14(2)            --------->LBD16 <---------ANAC58<-------- -------->GLK1(2)             <---------MYB52(1)          <---------LBD16   <---------ANAC46--------- ----->LBD16                  <---------ARR14(2)       --------->WOX13(1)   <---------ANAC58<-------- ---->HSFB2a(2)         --------->GLK1(1)            <------ZmHOX2a(2)   ---------->CDC5   <---------LBD16 -----HSFB2a(2)         <---------GLK1(1)       ------>ZmHOX2a(1)<---------ANAC58  <---------TCP16(1)   agaatcagcgaactggactcgtgaagaaatccgatatgtgaaagactctccttcgatcaatccggtttcttacgctcagcgtgtggctccacttccggag  17789800       <---------LBD16       <------NtERF2       <---------------------WRI1       --------->ATERF1(1)      ------>NtERF2      <---------RAP2.3(1)     --------->ETT(2)     <---------DEAR3(1)   <-----------HVH21  <-----------RAV1(1) ----->ZmHOX2a(2) ---------ANAC58 ---------ANAC58 ============================HOX2a_HOX2a ------>ARR14(2) ->LBD16 <---------DEAR3(2) ------>ARR11(3) -------ARR14(2) ---ZmHOX2a(1) -ANAC46<---------DEAR3(1)         --------->LBD16 >HSFB2a(2)                       <-----------RAV1(2)         <------ZmHOX2a(1)            ---------- -HSFB2a(2)           <------ZmHOX2a(1)<------ZmHOX2a(1)<------ZmHOX2a(1)   --------->GLK1(2)   gatcgtgtcgccggtgagaatgaaggagatagaactccagaggagatggagagggagaggaagaggattgaattagagaatcgagctagaagaaggtttt  17789900  Previous    Next  AGI:  At2g42700.1    Description:  similar to hypothetical protein OsI_034052 [Oryza sativa (indica cultivar-group)] (GB:EAY80093.1); similar to hypothetical protein LOC_Os11g06810 [Oryza sativa (japonica cultivar-group)] (GB:AAX93012.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69888.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) Range:  from: 17785378    to: 17789214    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g42710.1    Description:  ribosomal protein L1 family protein. similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT3G63490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69889.1); contains InterPro domain Ribosomal protein L1, bacterial-type; (InterPro:IPR005878); contains InterPro domain Ribosomal protein L1, 2-layer alpha/beta-sandwich; (InterPro:IPR016094); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 17789385    to: 17792140    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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