Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------WOX13(1)  <------------CBF <--------ATHB1 --------->ATHB51 -------->HAHB4 <---------ICU4 --------->ATHB12                             --------------->AGL15 ---------AHL20(2)                           ----------------->AGL2 -------->AHL20(2)                           ----------------->AGL3 ---------YAB1                              ------>ZmHOX2a(1)     --------->YAB1     --------->ARR11(3) ---------ATHB51                      <---------ICU4             --------->ICU4      <-----------ARR10 -------->ICU4                     --------->YAB1 --------->AHL20(2)         <---------------------WRI1 --------AHL20(1)               --------->YAB1<---------------AGL15     ------>ZmHOX2a(1) ---->AHL20(2)     --------->AHL20(2) --------->YAB1             <---------YAB1--------->TOE2(3) ---->AHL20(1)     <---------AHL20(2)<---------ATHB12            <---------ATHB12    <---------ARR11(3) -----AHL20(2)   <---------ANAC55(2) <---------YAB1        ----------->GT1  XXXXXXXXXXXXXXXXXXXX>MIR780.2 >AHL20(2)       --------->ANAC55(2) --------->ICU4---------->DOF2<---------ICU4<---------MYB52(1)   aaataattgataaaccaatacttaattagactaaaaataatcattcctccaaataaagaaatagataatcattcctctcttcgttaatatctaagtaaaa  17697200                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                            <-----------GT1        <-                                                                      <---------AHL20(2)        <----                                   <---------AHL20(2)                 --------->AHL20(1)      <------                                   --------->AHL20(2)  <----------DOF2--------->AHL20(2)<---------AHL20(2)                    <---------TOE2(3)                  <---------DAG2 <---------AHL20(1)--------->AHL20(2)         <----------DOF2        --------->AHL20(2)  <-----------GT1  <---------AHL20(2) <---------AHL20(1)         <---------DAG2        --------->AHL20(2)<---------YAB1      --------->AHL20(2) --------->AHL20(1)      <-----------GT1      --------->AHL20(2)   --------->AHL20(2) --------->YAB1    --------->WOX13(1)   aacaaattttactttatctactaatgaaaaaaaataaaaaaattctacaatattatactttttctactaaaataaattttacattttcaattaattaagg  17697300                                <------NtERF2                                <---------At4g35610                                --------->At4g35610                              <---------PCF2                             <------NtERF2                            <---------RAP2.3(1)                            <---------ATERF1(1)                            <---------MYB46(3)                            --------->LBD16                           <---------ANAC58                           <---------ANAC46                           <---------DEAR3(1)                --------->WRKY38(1)                           <---------ANAC58                  --------->WRKY12                          <---------LBD16                    ----------->HVH21                        --------->ALFIN1                   <---------At4g35610                      <-----------RAV1(1)                  --------->At4g35610                      <---------MYB46(3)                   <---------ZAT2                    <-------GAMYB                          ----------->RAV1(2) <---------HSFC1(2) <---------ANAC58                       --------->ZAT2 --------->HSFC1(2)--------->MYB55(2)                    <-----------RAV1(2) <---------HSFB2a(1)<---------ANAC58                     <---------WRKY12 --------->HSFB2a(1)<---------ANAC46                     <---------WRKY38(1) -------->ARR14(2) <---------MYB46(3)   --------->LBD16<---------PCF2 -------->ARR11(3) --------->MYB52(2)  <---------O2  <---------MYB46(3) -----------ARR10  <------MYB83------>NtERF2   ---------->DOF2 -------->GLK1(2)<---------MYB52(1)    <---------ANAC46<-----------HVH21 ---------ARR14(2) <------MYB46(1)  <---------ARR14(2)<------MYB46(1)                     <---------ATHB12 ---------ARR11(3)<---------AtMYB61 --------->ARR14(2)<------MYB83       --------->AHL20(2)--------->ATHB12 --------GLK1(2)<-------GAMYB--------->ATERF1(1) --------->DAG2   <---------LBD16        ------->TEIL --ZmHOX2a(1)  <-----------RAV1(1)----------->ARR10  --------->MYB59     <---------AHL20(2)<--------HAHB4 ---TOE2(3)    <---------MYB46(3)--------->ATERF1(1)--------->ALFIN1--------->LBD16   <---------ATHB12   agaatcttctcagaagtctgttggttgtggcgggggcagacccgtggaagaaaggtgggtcagctgaccccgcataaaaatgggagcaatgaatcatttg  17697400                        <----------DOF2                     <------MYB83                     <------MYB46(1)                                        <-------TEIL                   <--------P                                     ------->MYC3                  <---------ANAC58                              <---------TOE1(2)                  <-------GAMYB        <---------ANAC46        <---------ALFIN1                  <---------ANAC58--------->MYB52(2)  ------>MYB46(1)    --------->ATHB12                 <---------MYB46(3)<-------GAMYB      ------>MYB83<-------MYC3                 <------MYB83     <---------MYB46(3)--------->MYB46(3)  <---------YAB1                 <------MYB46(1)<--------P          <---------MYB59     --------->ICU4                <---------AtMYB61 --------->MYB111(1)<---------ALFIN1   <---------ATHB12                --------->MYB59 <---------MYB52(1)--------->PCF2<---------TOE2(2)           <---------TOE2(3)  <---------MYB46(3) <---------WRKY18(1)   <---------TOE2(3)        -----           <---------TOE1(3)<---------WOX13(1)<---------ANAC58--------->TOE1(2)              <-------           <---------YAB1 --------->ATHB12    <---------ANAC58--------->TOE2(2)    ------>ZmHOX2a(1)         --------->YAB1<---------ANAC58<---------ANAC58 --------->AtMYB61-------->HAHB4     <--------        <---------YAB1 <---------ANAC58<---------ANAC58 --------->TOE2(3)<--------ATHB1  <---------DAG2   aacatgaactattatggtttggttggcttaattggttagttgtttgtgtcttgacccacctaaacccacgtttaatgattcattcctcccaatttttcct  17697500                                         <------------CBF                                        -------->ATHB1                                        <---------ICU4                                        --------->YAB1                                        --------->ATHB51         <---------MYB52(1)             <--------ATHB1                                       <-------    <-----------GT1                    --------->ICU4                                      ----------  <---------AHL20(2)                   <---------ATHB12                                    <--------- ->ZmHOX2a(1)                          <---------ATHB51--------->ZAT18                    <---------- ----GT1<-------GAMYB              ------------>CBF   --------->ALFIN1          <-----------GT1    <- ---GT1<-----------RAV1(1) <----------DOF2        ---------->DOF2    <----------DOF2      <----------   ctattttttctgttgggccatagcccattctttaaacttcaataattgttttcaaagtgggcaaatgacttcttttcatttttcacttgttttctctttt  17697600    --------->CCA1(2)   <---------ARR14(2)                                                            --------->ARR14(2)   <---------ARR11(3)                                                            <---------ARR14(2)   --------->ARR11(3)                                                       --------->ANAC46   --------->ARR14(2)                                                       --------->ANAC58 ----------->ARR10                    --------->ANAC58                      --------->ANAC58 ---DOF2 *TSS                         --------->ANAC46                 --------->LBD16 ----->AGL15                          --------->ANAC58             <---------ARR14(2) ------AGL15                  --------->AtMYB61                    --------->ARR14(2) -GT1  <-----------HVH21   <-----------GT1                      --------->AHL20(2)               ---- --------MYB52(1)       <---------ARR14(2) --------->DAG2       <---------AHL20(2)               ---- -------AGL1            --------->ARR14(2)---------->DOF2----------->GT1--------->ANAC46 <-----------GT1   cggtagatatgtcatatgtgagactggattcaccatcaccacgaaaaagggagagagaagggctaataaaatccgcacaagcaaatcggagttactatgt  17697700                   ------>NtERF2               <---------DEAR3(1)              <------NtERF2              --------->ATERF1(1)             <---------ERF1             <---------RAP2.3(1)             <---------ORA47(2)             ------>NtERF2                                                           --------->LBD16             <---------ATERF1(1)                                                    --------->DEAR3(1)            --------->ATERF1(2)                                                    --------->ANAC46            <---------RAP2.3(3)                                                  --------->DEAR3(1)            <---------RAP2.3(2)                                                  --------->AtMYB61            <---------DEAR3(1)                                                   <---------ALFIN1            <---------ATERF1(2)                                               <---------ALFIN1           --------->ATERF1(1)              ------>MYB46(1)                --------->RAP2.6(2)           <---------ABI4(1)                --------->MYB52(1)            --------->MYB46(3)          <---------ATERF1(1)               ------>MYB83                --------->ANAC46        --------->DEAR3(2)                 <---------ALFIN1           <---------At5g28300      <---------ARR14(2)                  <---------ABI4(2)    <------NtERF2  --------->DEAR3(1)  --------->At5g28300    <---------ATHB12 --------->MYB46(3) <---------DEAR3(1) --------->MYB46(3) <---------ANAC46--------->ATERF1(1)      <---------MYB55(2) --------->ETT(1) --------->AtMYB61 ----------->GT1<---------ATERF1(1)     --------->PCF2      --------->RAP2.6(3) <---------MYB55(2) ----->ZAT18--------->DEAR3(1)<---------ARR11(3)           <-----------HVH21------>NtERF2           - ----->ETT(2)<---------DEAR4(2)     <---------YAB1        <-----------RAV1(1)--------->MYB46(3) <----   ggaccgtgaaaccggcggcgatgccgaatcaatttcttatgagacccaccgtagcaacttctgtcggctattcacagccaccaccaccgcataatgttat  17697800            --------->HSFB2a(2)          ----------->GT1          <---------At4g35610      --------------->AGL15     --------->GLK1(1)            --------->TOE2(3) --------->HSFB2a(2)     <---------At4g35610                                                     ---- ----->ZmHOX2a(2)        --------->At4g35610     --------->ATHB12                           <-------- -----YAB1--------->At4g35610   <---------ARR11(3)                           <---------ANAC46    <---   gatcgagaattcttctgaaattttctgagctcaatttcttaatttgtgaattgatttgtggcaagagcgactccatgggacttggagccatctcgtctct  17697900                                             <---------ZAT14                                             --------->ZAT14                                      <---------ANAC55(2)                       <---------TOE2(3)                                      --------->ANAC55(2)                  <---------RVE1(1)                                      ----------->GT1                     <---------ARR11(3)                                      --------->ANAC58                    <---------GLK1(2)                                      --------->ANAC46                    --------->ARR11(3)       <-----------RAV1(1)            --------->ANAC55(1)               ----------->ARR10 ----->At4g35610                      --------->ANAC58              --------->At4g35610 -CCA1(2)         --------->ZAT14   <-----------RAV1(2)             <---------At4g35610             < ------At4g35610  <---------ZAT14 ----------->RAV1(1)    <----------DOF2<---------TOE2(3)           <   gctacatatatgtgggcaagagcagtgctacttatgcaacaggtaactccagtgtttttctttgggttttagctaagatttttaggctatatgaattgca  17698000                                                                                                    <                                             --------->WOX13(1)                                   <--                                           <---------YAB1  <------NtERF2                 <---------ANAC58                                   --------->YAB1     --------->MYB52(2)           <---------YAB1 <-- ------MYB83          <---------ANAC46    <-----------GT1<---------DEAR3(1)     ----------->HVH21---- ------MYB46(1)       --------->ALFIN1<---------ICU4 <-------TEIL  <------ZmHOX2a(2)     <---------ANAC58   tttggtttggactatatgttatctgtgtggaatcgaatcaaaattatcaatctggttcgtcggagttggatcaattgtggaagtgacaattgctagtttg  17698100  Previous    Next  AGI:  At2g42485.1    Description:  other RNA Range:  from: 17697609    to: 17698096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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