Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->MYB52(1)                                           --------->MYB46(3)                                           <---------ATHB12                                         --------->WOX13(1)                                      --------->YAB1                                   --------->WOX13(1)            <---------AHL20(2)                         <---------------AGL15                   --------->AHL20(2)                         --------------->AGL15          --------->ALFIN1                        <-----------------AGL1         ------->MYC3                        ----------------->AGL2        <-----------RAV1(1)                        ----------------->AGL1        <---------O2                             <-----                        <-----------------AGL3        --------->O2           --------->RAP2.6(3)  ---                        <-----------------AG<---------WRKY38(1)  ---------->DOF2             --------                    --------->ALFIN1  --------->TOE2(3)<-------MYC3         --------->MYB52(1)<------ZmHOX2a(2)       --------->ZAT14  ----------------->AGL3     <-------TEIL --------->AHL20(2) <------NtERF2  --- >ZAT6 <---------ZAT14  <-----------------AGL2  ------->GAMYB   <---------ATHB12  --------->RAP2.6(2)   gaactccaatgcagtgagtgagatgggccaattttggcaatctcaatcaacggtccatgtggcccaataaatcactaaaaacggccgaatttttagatcc  17627800                      --------->ANAC58                      --------->ANAC58                     --------->SPL7                   <---------PCF2                   --------->TCP20                   XXXXXXXXXXXXXXXXXXXXX>MIR447A/B                  <------NtERF2          <--------ATHB1          -------->HAHB4          <---------ICU4          --------->ATHB12          --------->ATHB51         <---------ATHB51     --------->AHL20(2)  ---------->DOF2                              --------->At4g35610 ------->TEIL    <---------MYB46(3)                                <-------TEIL --TEIL  --------->AHL20(2)                            --------->ALFIN1 ------>ANAC46  --------->ALFIN1                     --------->ALFIN1 <---------At4g35610      ------ ->AGP1  <---------AHL20(2)                  <---------AHL20(2)<---------YAB1              ---------- ------>AtLEC2  <---------ANAC46  ---------->ID1     <-----------RAV1(1)                <------------   atgtaacttaaataattggtggggacggaaagtcttgtcgttttcatttattcgagtgtggcactctgattcatctcaagcttattttttataaaaagag  17627900                                                   ----------->GT1                     ------->GAMYB       <---------AHL20(2)         --------->YAB1                    --------->MYB46(3)   --------->AHL20(2)      ----------->GT1                  --------->MYB52(1)     --------->AHL20(1)  ------->GAMYB ----->GT1        --------->YAB1    --------->AHL20(1)      --------->MYB46(3) >DOF2            <---------ICU4    --------->AHL20(2)      <---------MYB52(2) ---AGL15      --------->YAB1       <---------AHL20(2)    --------->MYB52(1)       <-----------GT1  -   taattttagaggctgaacaataacgaccttgaacaaaataaaataaaataagagggtgaacaacgaccagtcaaaatttgaaaatttactcaccagagtc  17628000                                                                                   --------->MYB46(3)                 ----------->GT1                                                 <-----------GT1                 <----------ID1                                             --------->ICU4         ---------->DOF2                                                  --------->ATHB12      <---------AHL20(2)                                                 <---------YAB1      --------->AHL20(2)                                                 --------->ICU4  --------->ICU4----------->GT1     --------->YAB1      <---------ICU4 --------->YAB1 <---------AHL20(2)      ---------->DOF2          <---------MYB59    <---------ZAT14 -------->YAB1---------->DOF2     ------->TEIL    --------->TOE2(3)  --------->ZAT14         --------   tataaaaattaaaaaggaaaggaaaaaaaaagaatgaatcatagtgaaatgaccttatttatggctccaactatagtgattagtaaccactaaaccagaa  17628100      ----------->HVH21                        ------------>CBF    --------->ANAC55(2)                   ---------->DOF2             <---------CCA1(2)    <---------ANAC55(2)              <---------MYB59            ---------->DOF2--------->YAB1       - --->GT1                           --------->MYB52(1)   ------------>CBF      <---------YAB1<--------   aaaaacaagtgacccattacacagggattaaaaatactaccgaataaagcccaataggcccaattcaaaagcgtctctctatcatcgtctctccaaaccc  17628200                                                            <---------TOE1(3)                                                     ---------->DOF2                                                 --------->ANAC58            --------->ANAC58                                               <---------ALFIN1            <---------ALFIN1                                             --------->ANAC58      <----------DOF2               <----------DOF2            ------->GAMYB     <---------TOE2(3)--------->ANAC58           <-----------GT1               --------->MYB46(3)--------->MYB52(1)--------->ANAC46  <------------CBF                *TSS <-----------GT1     <---------DOF5.7(2)                ------- -------->AHL20(2)               <----------DOF2 --------->ANAC58 <---------ANAC58            ------- -ALFIN1<---------CCA1(1)      ---------->ID1--------->ANAC58     <---------ANAC58            <------   cataaattggatatttcctttctctaaaaatttggctttattaacagacgcactccaaagctaacgttgctttcttcccactccaaatggctcttgtgct  17628300                                                              <---------ZAT2                 --------->YAB1                      <---------ANAC58   --------->ZAT14          --------->MYB52(1)       <---------ANAC58 -->ZAT14       <---------YAB1             <----------DOF2   --------->ANAC58 -->ZAT18      --------->AHL20(2)          <---------DAG2    --------->ANAC58 ---ZAT18     --------->CCA1(2)    >>>>>>>>>TBF1 <----------DOF2                              -------   ctcagaacacacacagatataataaactcttaacgaagaagaagactttttcttttcttgagcaagctctgagaaactcacagagagggacagagagaga  17628400                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                           ----------->HVH21                                                                           ------->GAMYB                                                                          --------->MYB46(3)                                                                         --------->ZAT2                                                                         --------->At4g35610                                                                         <---------At4g35610                                                     <---------DOF5.7(2) <---------ZAT2                                                   --------->DOF5.7(2)  --------->MYB52(1)                                                  <----------DOF2      <---------ALFIN1           <--                                             ------>ZmHOX2a(1) --------->ARR14(2)    --------->AHL20(2)   <---------AHL20(2)      ------>NtERF2 ------->GAMYB  ------->GAMYB --------->LBD16<---------AHL20(2) ---->GT1         <----------DOF2       --------->MYB46(3) <<<<<<<<<WRKY18<---------MYB52(2) <-------   aatatttcattcgctactctctttaataccgccattgatgcaacctccttcgcgttaactgtcaaaatactccccaactgacaaaaattaaattcctttt  17628500                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                                 <---------DEAR3(2)                                                 <------MYB83                                                 <---------MYB46(3)                                                 <------MYB46(1)                                                <---------DEAR3(1)                                                <---------MYB46(3)                                               <---------ORA47(1)                                              <-------GAMYB                                              <-----------HVH21                                             <------MYB46(1)                                             <------MYB83    --------->ZAT6                  <-------                       ---------->DOF2       <---------DEAR3(2)                            --------->LBD16 ---------GT1      <---------------AGL15    <---------DREB2C(2)                          <---------LBD16 ---DOF2      ---------->DOF2       >>>>>>>>>>WRKY26        <---------YAB1            --------->KAN4(2)   tttctctctcgattttaaaagctctaaaaggaacgagttgatcaagtcggtcggttctggttatcactgaatttcattcaactcggtttattccggttta  17628600                                                                      <------NtERF2                                                                      --------->LBD16                                                                      <---------SPL7                                                    <-------GAMYB    --------->RAP2.6(2)                                                 --------->LBD16    <---------LBD16                                               <---------LBD16<---------DEAR3(1)                                               ------>ZmHOX2a(2)    --------->ATERF1(1)                       ----------->HVH21      --------->ARR14(1)  <---------MYB46(3)                     <---------At4g35610      --------->CCA1(2)   ------>NtERF2                     --------->At4g35610      <------ZmHOX2a(2)  ----------->HVH21                    --------->ARR14(2)       <---------ARR11(3)  --------->ALFIN1                    <---------AGP1           --------->ARR11(3) --------->ATERF1(1)                    <---------ARR14(2)       --------->ARR11(1) <---------MYB52(1)                    ------->TEIL             --------->ARR14(2)<---------DEAR3(2)               --------->MYB52(1)            <---------ARR14(2)<---------ATERF1(1)           ------>NtERF2                     <---------AGP1   <---------MYB46(3)             --------           --------->LBD16                   --------->AGP1--------->TCP20    --------->GLK1(2)          --------->LBD16                  ----------->ARR10  --------->MYB55(2)            ---------       <-----------GT1------>ZmHOX2a(2)--------->AGP1 <---------MYB46(3)     <---------GLK1(2)     -- ---DOF2 <---------LBD16          <-----------HVH21<---------ANAC46<------NtERF2            <--------   agtgtgattttcccggctaatggatctgacccaaggtttcagagctagatccggcgttgttgggccggtggccggactagaatctctcaatttcagcgac  17628700  Previous    Next  AGI:  At2g42300.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G57800.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO23529.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 17628234    to: 17631919    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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