Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <----------DOF2                                                                                     <---------At4g35610                                                                                     --------->At4g35610                                                                                   <------------AtMYB77                                                                                   <---------MYB55(2)                                         <----------DOF2         --------->MYB52(2)--------->MYB46(3)                                        <---------ANAC58       <---------MYB52(1) -------->P                                        <---------ANAC58       --------->DOF5.7(2)------>MYB46(1)                                 --------->ANAC58             --------->TOE2(3)------>ZmHOX2a(2)                                 --------->ANAC58             --------->At5g28300 ------>MYB83                                <-------TEIL              <---------ALFIN1    <------ZmHOX2a(2)                                --------->SPL7           ------>ZmHOX2a(1)   <---------ARR14(2)                                ------->TEIL             ============================HOX2a_HOX2a                              <---------SPL7             =============================HOX2a_HOX2a                             <---------ANAC55(2)     <---------ARR14(2)      --------->ARR14(2)                             <---------ANAC58    <------ZmHOX2a(2)    <---------YAB1------->GAMYB                             <---------ANAC58    ===============HOX2a_HOX2a <------ZmHOX2a(1)    <---          --------->ALFIN1   --------->ANAC55(2) ==================================HOX2a_HOX2a   ----        <---------ANAC58    --------------->AtSPL3   --------->ARR14(2)   <---------TOE1(2)   <------        <---------ANAC58   <-----------GT1      <---------ARR11(3)   <-----------HVH21    <---------DAG2   ataaaactgggcttgtggcccaattctatttacgtacgcattgctttcaagatcgaatcctcaccgttaattgtcataggatccaaccgctgctttttac  17611000                          <---------SPL7                         <------MYB83                        --------->MYB111(1)               <---------WOX13(1)              <---------ARR14(2)      -------->HAHB4              --------->ARR14(2)      --------->YAB1              <---------GLK1(2)      <---------YAB1            --------->LBD16          <---------ATHB12          --------->ANAC46              <-------          <---------LBD16<------MYB46(1)--------->CCA1(2)      --------->ANAC58       --------->ZAT6       ---------->DOF2  <---------------AtSPL3                 --------->ANAC58      ------>MYB83   <---------HSFB2a(2)  <---------------AtSPL8  <---------ANAC58                     ------>MYB46(1) ------------AGL15     <--------P   <---------TOE2(3)  <---------YAB1                -------->P<----- ----------->AGL15   --------->MYB52(2)--------->ARR11(1) <---------YAB1          --------->MYB46(3) -----GT1--------->MYB52(1) --------->SPL7      <---------ANAC58         --------->YAB1      --------   taataccagaaaaccggattggctagttggtacggtctaatgatacgataacttgctctgattatacgaaaacactcatcaagaaccaactctaattaat  17611100                                                                  --------->ANAC58                                                                  --------->ANAC58                                                              <-----------HVH21                                                             --------->LBD16                                                             ----------->HVH21          --------->YAB1                                 <---------SPL7          -------->HAHB4                               --------->At4g35610         <---------YAB1                                <------NtERF2                           ------      <---------------AGL15                            <---------At4g35610                    <------      --------------->AGL15                           <---------DEAR3(2)                      ------>NtERF2      <---------YAB1                        --------->ATHB51--------->HSFB2a(2)              <-------     ----------------->AGL3       ------------>CBF   <---------RAP2.6(2)   <---------TOE1(2) -------- --AHL20(2)             <------------CBF --------->TOE2(3)  <---------HSFB2a(2)        <-----------RAV1(1) ----TOE2(3) ----------->GT1    --------->LBD16      <---------DEAR3(1) <---------ANAC46 <---------RAP2.6(2) ->AHL20(2) <---------YAB1  <-----------GT1 <---------ICU4 <---------LBD16 <---------TOE2(2) --------   gttttcttctaattatagttaaaacggattgaaccggacaattccataattttagtcggcttccggacaggccttcgtgggtttggaatttgtggccgac  17611200        <---------DEAR3(2)  <------------CBF ------>CBF ---RAP2.6(3) --ETT(1)                       <-----------TBP  --------->ANAC58 --->HVH21                  ----------->GT1      --------->ANAC58                 <---------GLK1(2) ->RAP2.6(2)              <---------ANAC46 <-------GAMYB                      <------ZmHOX2a(2)     <   aatgtattgtcggtttaagacttgtttagggtgtatatataagactgttgaacgaaaaaaaaaaaaaactcatcgactcgatcaaattcttaagacgacg  17611300                                                                                                    <                                                                                                    <                                                                 --------->AHL20(2)             -----                                                                 <---------AHL20(2)             <----      --------->MYB52(1)                                        --------->AHL20(2)           --------  --------->LBD16                        --------->LBD16     --------->ATHB12                -------- <---------ANAC46                  <---------ANAC58        <---------WOX13(1)               <-------- <---------ANAC55(2)               <---------ANAC58       <------------CBF                  <-------- ---------LBD16  ----------->GT1 <-----------GT1         --------->ATHB12                  <---------   attacggagaacgggagagaggtaatagaagagtttttcgttccgaattttgttttgtttcattgatttaattcttggaatttggggtttgtttttccga  17611400                            <---------LBD16                           <---------ANAC46                           --------->ALFIN1                          <---------SPL7                         <---------MYB46(3)                        <---------DEAR3(1)                        --------->ALFIN1                      <---------MYB46(3)                     <---------AtMYB61                     <---------DEAR3(1)                   <------MYB83                   <---------MYB46(3)           <---------ARR14(2) --------->LBD16     ----------->TGA1--------->ALFIN1 ------MYB83       <------MYB46(1) ------MYB46(1)   <---------AtMYB61 ---->ARR14(2)    --------->ALFIN1     --------->ANAC58 -----ARR14(2)    <---------DEAR3(1)   --------->ANAC46 --------->AGL1 <---------ANAC46       --------->ANAC58 --------->AG   <---------ANAC58  <------ZmHOX2a(1) ---GT1    --------->ARR14(2)<---------ANAC46                   ---------->DOF2 ---------AGL1  <---------ANAC58--------->ALFIN1          <---------------AtSPL8 --GT1     ------->TEIL <---------AtMYB61 <-----------RAV1(2) <-------TEIL                --------->ZAT6   tttggtgatgacgaatttgggtggtggtggtgcggaggagcaagccaggttgaagcagtatgggtacaaagtcaattccagtcttgttcttaacagtgat  17611500                                                                                   <---------ANAC46                                                                              ------>ZmHOX2a(2)                                                                            <---------ARR11(3)                                                                            --------->ARR11(3)                                                                            --------->ARR14(2)                                                                     ================HOX2a_HOX2a                                                                     <----------DOF2 <---------MYB52(1)                                                                     ===============HOX2a_HOX2a                                                       <---------WOX13(1)   <---------ARR14(2)                                                     ==============HOX2a_HOX2a<---------ANAC58                                                     ===============================HOX2a_HOX2a             <---------ANAC55(2)                     ================================HOX2a_HOX2a             --------->ANAC55(2)                     <------ZmHOX2a(1)     <---------GLK1(1)             --------->ANAC58                       <------MYB46(1)  ------>ZmHOX2a(1)             --------->ANAC58                 --------->LBD16 --------->LBD16 <---------ANAC58           --------->CCA1(2)                <---------LBD16 ------>ZmHOX2a(2)<------ZmHOX2a(2)     <------NtERF2  ------->TEIL   --------->LBD16  <------MYB83<---------GLK1(1)  <---------ANAC58   --------->DEAR3(1)            <---------LBD16  <--------P================HOX2a_HOX2a           <--   <---------DEAR3(1)           ------->TEIL<-----------RAV1(2) --------->GLK1(1)  <---------ANAC58   gagcgtcgtcgtgatacgcatgaatcttctggtgaaccggagagtctcaggggtaggattgatccgaaatcctttggagatcgtgtcgttaggggaaggc  17611600                                                          <------MYB46(1)                                                          <---------ANAC58                                                          <---------ANAC58                                                          <------MYB83                       <---------AHL20(2)                <---------AtMYB61                         --              <---------RAP2.6(2)                    --------->ATHB12                            <---             --------->At4g35610                    --------->ICU4                               <---        <---------At4g35610                 <---------HSFB2a(1)  <---------At4g35610             <---        --------->At4g35610                 --------->HSFB2a(1)  <---------ZAT2                  ---- ----NtERF2  <---------At4g35610   >>>>>>>>>TBF1    <---------YAB1            ---------->DOF2   <----   ctcatgagttagatgagcggcttaataaatctaagaagaagaaggaacgttgtgatgatttggtgtctgctcgtgagagcaaaagagttcgtcttaggga  17611700             -------->HAHB4      ------->TEIL    --------->ZAT14    <---------ZAT14      <------MYB46(1)    <---------ZAT18      ----------->GT1                                                            <    --------->ZAT18      <------MYB83                                       <---------ANAC58        < <---------ANAC46       <---------AtMYB61                      <----------DOF2            --------->At4g35610 ------->ALFIN1--------->CCA1(2)                              <---------ANAC58            <---------At4g35610 ---MYB83    --------->YAB1                                   <---------ANAC46 <------MYB83         < ---MYB46(1)<---------YAB1 <---------ANAC46      <------ZmHOX2a(1)          <---------ANAC58--------- ------At4g35610      <------ZmHOX2a(1)        <---------TOE2(3)    <---------TOE2(3)     --------->ZAT2 ----->At4g35610<---------LBD16     --------->At4g35610       <---------ANAC58 <------MYB46(1)     <- -----DEAR3(1)--------->ARR11(1)    <---------At4g35610    <--------P     <---------YAB1  <---------ZAT2   ggtgagtgtacttaatgatacggaggatggtgtttatcagccgaagactaaggaaacaagggttgcttttgagattatgcttggtcttatccagcagcaa  17611800                                    <---------At4g35610                                    --------->At4g35610                                   <---------MYB46(3)                                 --------->At4g35610                                 <---------At4g35610                               <---------RAP2.6(2)                               <---------DEAR3(1)                               <---------RAP2.3(2)        <------NtERF2         --------->SPL7     <---------At4g35610      --------->ABI4(2)     --------->At4g35610     --------->ALFIN1   <---------MYB46(3)       <---------SPL7  --------->ALFIN1         <---------ANAC58                          --------->LBD16 ---------ANAC46           <---------ANAC58--------->GLK1(2)         <-----------HVH21 ---------ANAC58          <---------DEAR3(1)        <---------ARR14(2) ---------ANAC58         <---------LBD16  --------->ARR11(3)     <---------ARR14(2) >RAP2.6(2)           <---------ANAC58    <---------ARR11(3)     --------->ARR14(2)---------->DOF2 --------MYB46(3)     <---------ANAC58  ----------->ARR10        ------->TEIL   --------->AtLEC2   ttgggtgggcagcctttggacattgtttgcggtgcggctgatgagattttggcagttcttaagaatgaatccgtcaaaaaccatgaaaagaaggtagaga  17611900  Previous    Next  AGI:  At2g42270.1    Description:  U5 small nuclear ribonucleoprotein helicase, putative. similar to EMB1507 (EMBRYO DEFECTIVE 1507), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G20960.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to hypothetical protein OsI_005352 [Oryza sativa (indica cultivar-group)] (GB:EAY84119.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64800.1); similar to hypothetical protein OsJ_004915 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21432.1); contains InterPro domain Sec63 (InterPro:IPR004179); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro Range:  from: 17611408    to: 17618411    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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