Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <------MYB46(1)                     --------->WOX13(1)        <-----------GT1      <---------REM1(1)          --------->DAG2              --------->At4g35610      <---------AHL20(2)--------->YAB1     ----------------->AGL1              --------->YAB1  ------ ------->DAG2      <---------YAB1<------MYB83    ----------->GT1     <---------MYB46(3)        ------ ------->DOF2    <---------CCA1(2)      <----------DOF2---------->DOF2        <-------TEIL >>>>>>>>>MYB2   aaaagtattttaaccttgtgtatcattcataatgtaggttttctttccattttgaaaaaaagttttgatattggttcgcattcatcagttgaaaaccaag  17594100                                                --------->ATHB12             <---------WOX13(1)                 <---------ICU4         <--------P                            --------->AHL20(2)      <---------YAB1                    --------->At4g35610    <---------ICU4                  <-----      <---------TOE2(3)             <---------ARR11(3)    --------->TOE2(3)          <----------ID1 -   <---------AHL20(2)               --------->ARR11(3)  ------>MYB83                 ----------->GT1< --->ANAC58 <---------ARR14(2)     --------->CCA1(1)    ------>MYB46(1)           ---------->DOF2---- --->ANAC58 --------->ARR14(2)     --------->RVE1(1)    -------->P ----------------->AGL1     -------   tcaaatttatggtagattggcaatggacaaacacaaaatatcatctccatttattgccaacctcataatgccaaatggtggaccaaaaggaaaaacatgc  17594200                                                      ----------->GT1                                                     --------->ANAC58                                                     --------->ANAC58                                              -------->HAHB4                                              --------->ATHB12                                              --------->ATHB51                                              <--------ATHB1                                              <---------ICU4                                             --------->AHL20(2)    <---------AHL20(2)                       <---------ATHB51                                   ----- --TEIL                                      <---------ATHB12                                 ------- -------->AHL20(2)                     <-----------HVH21                                     -------- ---------AHL20(2)                <-----------GT1  <---------AtLEC2       --------->CCA1(2) --------- --->TEIL                     ------->TEIL   <---------AHL20(2)      ---------->DOF2   ----------->GT1 -->AtLEC2                  <-------TEIL     --------->ICU4        --------->YAB1     --------->ZAT6   atttatttattctcttgacataagagaaaatgcatttaacttgtcaaataattgcaaggaaaaactctataaaaagatagaaatgtgaacagtataaagt  17594300                          --------->AtMYB61                               --------->O2    <---------ZAT18 ---------->DOF2        --------->ARR11(3)                                <---------O2  <---------At4g35610 ---->AHL20(2)          <---------ARR11(3)                                --------->ANAC55(2) ---->GT1           ---------->DOF2                     --------------->AGL15           --------->At4g35610 ->DAG2    <---------------AtSPL8                 <---------GLK1(2)       --------->REM1(1) ->DOF2    --------------->AtSPL8<---------TOE1(2)--------->ARR14(2)      <---------ANAC55(2) <------   aaataaagaaatatgtgtacatgaaagacctctccaatgttcacttgctccagtttctccaagattagaaactgctacgtctctctctatagctccctcg  17594400                                                        <-----------GT1                             <                                                    <-----------GT1                                <-                                           <---------SPL7                                  ----------                     ------->GAMYB         <---------SPL1(2)                               <---------CCA1(2)                    --------->MYB46(3)    <---------ANAC58                               --------->O2                  ----------->RAV1(1)     <---------ANAC58                           *TSS============                 --------->MYB46(3)      --------------->AtSPL8                 <-----------GT1<-----        ----------->GT1  ----------->RAV1(1) --------->SPL7            <----------DOF2   --------->TGA1a ---TOE1(2)    <-----------GT1           --------------->AtSPL3        ============================bZIP_DOF   ttttgctatgtggtaattaacaacagacaacagtttttgtttgtccgtaccgttttacttactctctcactgtctttgtctattaccactctcgtctctt  17594500                                                                        <----------DOF2                                                                       <---------ANAC58    ---------->ID1                                                     <---------ANAC58   <-----------GT1                                                 --------------------->WRI1 ------------------------ANAC81                                    <----------DOF2 ---------DOF2                                                  <-----------GT1               <------ >ID1                                                     <---------RAP2.6(3)             ------>ZmHOX2a(1) =====bZIP_DOF                            --------->YAB1 --------->RAP2.6(2)              <----------DOF2 -----DOF2                             ----------->GT1 --------->At4g35610        <----------DOF2   tcttttttccttctgttctgtttctctctctaaacccaaaacagtcaaaatcagggaagccgaaattttctttgctttcttctcctttggtcctttcttt  17594600                   <---------ANAC46             <------MYB46(1)             <------MYB83            --------->MYB59          <---------MYB52(1)               <-----------GT1               ------>MYB83     ------------>AtMYB77         --------->YAB1                         ------>MYB46(1)    ----------->HVH21             --------->ATHB12                       -------->P                <-   --------->LBD16 <---------ANAC58   ----------->GT1                   ----------->RAV1(1)      ----  --------->ANAC46 <---------ANAC58 <---------YAB1                    --------->MYB46(3)         <--- ----DOF2<-------GAMYB           --------->ICU4 <----------DOF2   <------ZmHOX2a(1)     -------------   aaacccgagacagttaggtttgtgtgagagagagaatgatgagtaaaaccctttctgtctgagtaagaggaaaccaacatggagatgggttccaactcgg  17594700                                                                                                  ===                                                                                                  <--                                  --------->ARR14(2)                                              ===                                <---------MYB46(3)                                               ----                                --------->MYB55(2)                                             <-----                                <------MYB46(1)                                         ------>ZmHOX2a(2)                               <---------AtMYB61                                        =============                               --------->ALFIN1                                        --------->CCA1(2)                              <---------MYB52(1)                                       <------ZmHOX2a(2)                             <-------GAMYB                                             ==============             --------->LBD16 <---------ANAC46                                         --------->AGP1<           <-----------------AGL1 <---------ARR14(2)                                  <---------ARR14(2)         <---------SPL7     --------->MYB55(2)                                        <-----------ARR10    --------->WRKY18(1)     <---------MYB46(3)                                        --------->ARR14(2)   <-----------HVH21     <-----------HVH21                    --------->ZAT14         --------->ARR14(3) --------->LBD16       <------NtERF2                          <---------ZAT14         --------->ARR11(3) --------LBD16     --------->AtLEC2     <---------ALFIN1     --------->ALFIN1         <---------ARR14(3) ----->ARR14(2)  <-----------RAV1(2)  ------>ZmHOX2a(1) <-----------HVH21       <-----------RAV1(2)<- ------ARR14(2)<-----------HVH21<------MYB83           <----------DOF2   --------->ATHB12      ------ ---->AGL1 <---------LBD16 <---------ANAC46          ------>ZmHOX2a(1)  <---------YAB1<---------ARR11(3)   gtccgggtcatggtccgggtcaggcagagtcgggtggttcctccactgagtcatcctctttcagtggagggctcatgtttggccagaagatctacttcga  17594800             ======================HOX2a_HOX2a             <------ZmHOX2a(2)            --------->TCP16(1)            --------->TCP20                                       <-----------HVH21            <---------ARR14(2)                                 --------->ALFIN1            --------->ARR14(2)                                 <---------ANAC58          <---------MYB46(3)                                   <---------ANAC46       <---------MYB46(3)                                      <---------ANAC58      <---------DEAR3(1)                                    <---------DEAR3(1)      --------->ALFIN1                                    --------->REM1(2)      <---------AtMYB61                                  --------->ALFIN1    <---------MYB46(3)                                  --------->LBD16    --------->MYB55(2)                                 <---------ANAC58   <---------DEAR3(1)                                  <---------ANAC58   --------->ALFIN1                              --------->TGA1a  <---------ARR14(2)   <---------AtMYB61                             <---------ANAC58 --------->ARR14(2) ===================HOX2a_HOX2a   <---------MYB46(3)<-----------HVH21 ----ZmHOX2a(1)                  <---------AtMYB61 --------->ALFIN1      <-----------RAV1(2) ====================HOX2a_HOX2a --------->ALFIN1--------->ANAC55(2) <---------MYB46(3)            -- ------->HVH21=====================HOX2a_HOX2a   <---------O2 --------->ATERF1(1)    --------->ARR14(2) ----HSFB2a(2)------>ZmHOX2a(2)<---------ZAT2    --------->O2 <------NtERF2          <---------ARR14(2) ====HOX2a_HOX2a            ------>ZmHOX2a(1)    <---------ANAC58<------NtERF2  <-----------HVH21  <- ====HOX2a_HOX2a--------->LBD16<---------At4g35610 ----------->HVH21 <---------DEAR3(2)         <---- ---------DEAR3(1)<---------ARR14(2)             <---------bZIP60(2)--------->ETT(1)--------->At4g35610 --------ORA47(1) --------->ARR14(2) <---------MYB46(3)<---------ANAC46<-----------HVH21    --------- --->HSFB2a(2)<---------LBD16<-----------RAV1(2) <---------TGA1a<---------MYB46(3)  <---------At4g35610   ggacggtggtggtggatccgggtcttcttcctcaggtggtcgttcaaacagacgtgtccgtggaggcgggtcgggtcagtcgggtcagataccaaggtgc  17594900                     <---------MYB59         <---------MYB46(3)        --------->ALFIN1      <---------HSFC1(2)      --------->HSFC1(2)      --------->HSFB2a(1)                                           <---------ZAT18                <-      <------MYB46(1)------>ZmHOX2a(2)                              --------->ZAT14              <---      <---------HSFB2a(1)                 <-----------GT1           --------->ZAT18              <--- --------->ALFIN1  <-----------ARR10     <---------YAB1             <---------ZAT14              <--- ------->O2        ------->TEIL     ----------->GT1              <---------ANAC58              <----- --------O2<---------ANAC46        --------->DAG2                <---------ANAC58           <-------- --NtERF2--------->ALFIN1--------->MYB46(3)                      <---------ANAC46         <---------At5g28300 >ZAT2<------MYB83 <---------AGP1---------->DOF2               <---------ZAT14      ---------->DOF2<-   caagtggaaggttgtgggatggatctaaccaatgcaaaaggttattactcgagacaccgagtttgtggagtgcactctaaaacacctaaagtcactgtgg  17595000  Previous    Next  AGI:  At2g42200.1    Description:  squamosa promoter-binding protein-like 9 (SPL9). Identical to Squamosa promoter-binding-like protein 9 (SPL9) [Arabidopsis Thaliana] (GB:Q700W2;GB:O48527;GB:Q94AJ2;GB:Q9SMX7); similar to squamosa promoter-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G57920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23376.1); contains InterPro domain Transcription factor, SBP-box; (InterPro:IPR004333) Range:  from: 17594485    to: 17596708    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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