Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                          <---------ICU4        <----                                                                          --------->YAB1  --------->ANAC55(2)                                                                         <---------YAB1   --------->ANAC58                <---------ARR11(3)                    --------->YAB1     <---------ATHB12 --------->ANAC58          --------->ZAT6                        <-----------GT1     --------->YAB1        <---------ANAC55(2)         --------->ZAT18                ------>ZmHOX2a(1)       <---------ATHB12 <-----------HVH21--- --------->GT1 <---------CCA1(2)        --------->LBD16  --------->YAB1  --------->ICU4<---------ATHB12   aatgtgataagaacactatatctatcttccattccatcgttcctgataatttacaagaatcatcaaatcaacataatcattctcgtcaaatcaagtaatc  17584100                                                                                              <------                                                                                              <------                                                                                          --------->At4g35610                                                                                          <---------At4g35610                                                                                          --------->GLK1(1)              <---------ANAC46                              ----------->RAV1(2)    <---------O2------              <---------ANAC58           --------->ATHB12  ------->TEIL        <------NtERF2  <------       <---------ATHB12                 <---------YAB1   ------->GAMYB       <---------ANAC46<------- ---->YAB1------->TEIL      --------->At4g35610         --------->MYB46(3)   --------->ETT(1)<-------TEIL -------GT1 --------->ARR11(3) --------->MYB52(1)       <---------MYB52(2) <-----------HVH21--------- ------>ANAC46<---------ANAC58----------->HVH21   <----------DOF2       <------ZmHOX2a(1) <---------GLK1(1)   acaacaccaatgaatttcttgaatttgatcatctaacagataatgaatggaactttcaacgaacctgatgaagaggatgtcggagacttgggagatgcgg  17584200                                                                          <---------ZAT2                                                                          --------->ZAT2                                                                          <---------At4g35610       --------->MYB52(1)                                                 --------->At4g35610      --------->ARR14(2)                                             <---------LBD16      <---------ARR14(2)                                             ------>ZmHOX2a(2) ---ANAC58                                                         <---------ARR14(2) ---ANAC58                        --------->ATHB12                 --------->ARR14(2)   <------NtERF2 --->LBD16                       --------->ICU4               <---------MYB46(3)   --------->MYB59 ---ANAC46                    ----------->GT1                --------->ALFIN1  <---------ZAT6 --LBD16      --------->AHL20(2) <---------YAB1              <---------AtMYB61<---------TOE1(3) >ALFIN1  ----------->GT1  <------ZmHOX2a(1)  --------->DEAR3(1) <---------MYB46(3)--------->MYB46(2)   gaatcacagaaacggataaaatcgagagaggagagataattgggaacagcgacgatgaagagagtggtggatcgggagctagggttaggcagagagctat  17584300                                     <------MYB46(1)                                     <------MYB83                                     <---------DEAR3(2)                                    <---------MYB46(3)                                    --------->MYB55(2)                                    --------->MYB46(2)                                    <---------DEAR3(1)                                    <---------DEAR4(1)                                   <---------MYB55(1)                                        --------                                   <---------ORA47(1)                                        <-------    --------->CCA1(2)             <-----------HVH21                                          <-------    <---------GLK1(1)           <---------ANAC58                                             <-------   --------->ARR11(1)           <---------ANAC58                                    <----------DOF2   --------->ARR11(3)           <---------RAP2.6(2)                             <---------At4g35610   <---------ARR14(2)       <----------DOF2                                 <----------CDC5  <-------   --------->ARR14(2)   --------->ANAC58              <-------GAMYB        --------->At4g35610   <---------ARR11(3)   --------->ANAC58             <---------MYB46(3)    <---------At4g35610 ----------->ARR10   <------ZmHOX2a(2)              <---------AtMYB61   <------ZmHOX2a(1)   <-------TEIL   gtgaagatttgcgatagagatggatcaagcctttgcggtcggtgagtttgagagatggttgtatgagtttaagaggaggctgagctcttttcgatgcgta  17584400                                                   <---------KAN4(2)                                                ------->GAMYB                                               --------->ANAC46        <---------GLK1(2)                    <---------DOF5.7(2)    ----------->RAV1(2)                      --------->MYB52(1) ->ANAC55(2)                                <---------WRKY38(1)                          --------->ARR11(3) --ANAC46                                   <---------WRKY12   <------ZmHOX2a(1)     ---------->DOF2 --ANAC58               ------->GAMYB<---------LBD16   ------->TEIL       ----------------->AGL1----- --ANAC55(2)    <<<<<<<<<TBF1  <------MYB46(1)--------->At4g35610   ------->TEIL  --------->LBD16 --ANAC58    <<<<<<<<<TBF1     <------MYB83 <---------WRKY45 <---------TOE2(3)   <---------ANAC46----   agtgaaacctgattcttcttcttcaacggagattggtctctcggagtcaacggaatgaactctgaggatgaacatcgccagaagcgggaaagagctcgac  17584500                                         --------->HSFC1(2)         --------->ANAC58                <---------HSFC1(2)         --------->ANAC58                *TSS                                               --------- ---------->DOF2           ---------->DOF2           <---------YAB1                   <---------At4g35610 ---->DEAR3(1) <---------LBD16           --------->HSFB2a(1) <---------YAB1      <------------CBF -->NtERF2<---------At4g35610   --------->CCA1(2)<----------DOF2    ---------->ID1<XXXXXXXXXXXXXXXXXX   gacgaaagcttaagctactcggagagaagaaaagagacgacgatgcttcttctttctgattttttgattcgtcgttcttccgatattgagatgcttcaat  17584600                                                                                                <----                                                                                               <-----                                                                 --------->ETT(2)           xxxxxxxxx                                                        --------->MYB46(3)               --------->ARR11(3)                                                       --------->ANAC46            --------->ZAT6 ---                                                      ------>NtERF2         <---------ZAT6<---------AHL20(2)                                                      <------NtERF2    --------->YAB1    <---------ARR11(3)                <---------AHL20(2)           <---------HSFB2a(2) <---------ETT(2) <---------At5g28300 --->CBF       <---------YAB1           <---------MYB46(3)----------->RAV1(1)    <-----------GT1----- XXMIR170   <---------YAB1        <-----------HVH21 <---------ZAT18   <---------YAB1     <---------AHL20(1)   tttgtgttttgactcttattaatgggccttagccagtgtcatttgttcgataagtccgcccaacatgtcgatatgatagtgttttacagtatatattttt  17584700    <---------AHL20(2)                                                                            ---    --------->AHL20(2)                          <---------ICU4                                <------ -------GT1                                  --------->YAB1                                   ------- ------GT1                                  <---------AHL20(2)           <---------YAB1     *TSS <--- xxxxxxx>smallRNA(i)       <----------DOF2 --------->AHL20(2)          <---------ICU4      --------->YAB1 --------->CBF ----------->GT1       ------>NtERF2            ---------->DOF2              --------->AHL20(2) ----->ID1   --------->At4g35610  --------->SPL7---------->DOF2       --------->ICU4  ------------>CBF   cccaatttatataagagcagaaatatgggcttttggttcggcccatataataaagacgacgataaaaaggccattatgagacgaagtaaacaataatatc  17584800                     --------->At4g35610                     --------->ZAT2                     <---------At4g35610                       <---------ANAC46                 <----      <----------DOF2<---------ZAT2              ----------->RAV1(1)                           <----- ------>LBD16    <-----------HVH21              --------->ANAC58      <---------ALFIN1         ------ ---ARR11(3)  <---------At4g35610               ----------->HVH21    <---------ABI4(2)       <------- -->ARR11(3)  --------->At4g35610               --------->ANAC58--------->LBD16            --------->ALFIN1 ------LBD16  --------->ZAT2          ---------->DOF2--------->At5g28300                   <---------ANAC46   cctgaatgcttttttgagctgtcagcagcattcttatcaacaaagacgagacgacagtgactgttccgagtagcaccgctaaaacagtaagaggtgtgtg  17584900                --------->ANAC58            --------->AtLEC2            --------->ANAC55(2)            --------->ANAC55(1)            --------->ANAC46        <-----------HVH21   --------->ALFIN1 <---------ANAC58                                                                               <---- <---------ANAC58                                                                              <----- <---------ANAC46          --------->AtLEC2                                                   <------ ---GAMYB   <---------ANAC55(2)----------->GT1                          --------->AHL20(2)    ------- ------RAV1(1)  --------->ANAC58                             <---------ZAT14         <----------DOF2 --->ALFIN1 --------->ANAC58  ------->TEIL                   --------->ZAT14         <---------DAG2 --ANAC46   --------->ANAC58 <---------AtLEC2         <---------At4g35610         <-----------GT1   ttggggtgagagtcacgcaaggaaatttcatgcatgttaaatctgtgtttttttgtagctaagtttactgagatttatatcaaattactttattgttcgt  17585000  Previous    Next  AGI:  At2g42160.1    Description:  zinc finger (ubiquitin-hydrolase) domain-containing protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G26000.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65701.1); contains InterPro domain BRCA1-associated 2 (InterPro:IPR011422); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17581719    to: 17584541    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42170.1    Description:  actin, putative. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to putative actin 2 [Chorispora bungeana] (GB:AAV83798.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000); contains InterPro domain Actin, conserved site; (InterPro:IPR004001) Range:  from: 17584792    to: 17587470    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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