Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                          <---------ARR11(1)                                        -                                          ------->TEIL                                              <           ----------->HVH21             <---------GLK1(2)                                        <--          <---------ANAC58               <---------CCA1(2)                                      -----          <---------ANAC58            --------->HSFB2a(2)                            --------->MYB46(3)    <---------ZAT14                ------->TEIL                                      <---------MYB52(2) -----ARR14(2)                    <---------CCA1(2)     <----------DOF2         --------->At4g35610 < ->GT1   <---------At4g35610 ------>ZmHOX2a(1)       ------>ZmHOX2a(1)      --------->GLK1(2)   -----   tctgactgtattgctgacctctgtacatctccttctgtatctcgaatctctcatcctgcttcaattgcaaaaactcagaatcagataacaaaccctagcc  17572900                                  --------->ATHB12                                  --------->YAB1                                  <---------ICU4                                 --------->ICU4     --------->YAB1              <---------ATHB12 -------->ZAT14              --------->ANAC58                                      --------->TOE1(2) -------->SPL7               --------->ANAC58                                 <---------ANAC58 ---------ZAT18         --------->AtMYB61                                     <---------ANAC58 -------SPL7            --------->ANAC46                                  <---------ZAT6   --------->YAB1 ---------->AtSPL8      <---------ALFIN1          --------->ZAT6         <---------------AtSPL8 ---------ZAT14        --------->MYB46(3)      <----------DOF2   --------->DAG2  --------->SPL7 ---------->AtSPL3 <-----------HVH21         ---------->ID1     ---------->DOF2<---------SPL7   cgtacacttataagtagaaacagtcaccaccacgaatgattacatttgtctttcactacaagtcgataaagtaatagagttcgtaccagcgaattgtaat  17573000                                            <------NtERF2                                            ----------->GT1                                           --------->LBD16                                          <---------ANAC58            <---------ANAC58         <---------AtLEC2            <---------ANAC46        ----------------->AGL1                --------->GLK1(2)            <---------ANAC58     --------->GLK1(1)                      <---------HSFB2a(1)         <----------DOF2         <---------GLK1(1)                      --------->HSFB2a(1)    <---------ANAC58   <---------LBD16   <---------LBD16            ----------->GT1 --------->DAG2    <---------ANAC58   <---------HSFB2a(2)<---------ANAC58        --------->At4g35610 <---------WOX13(1)    --------->HSFB2a(2)<---------ANAC46        <---------At4g35610----------->GT1   cggattgcttcctttcgtgaattttctcggagtcgatttccatggcgggaaaaaaaaactcagaactgagcagaaaattctgagaaaaggtttcaacttt  17573100                                                                                                  ---                                                      ------>MYB83--------->LBD16                <---                                                      ------>MYB46(1)                            ----                                           --------->MYB46(3)   <---------LBD16     <---------AHL20(2)                                          ------------>CBF--------->ANAC46      ----------->GT1------          *TSS   ------>NtERF2<----------DOF2       <---------MYB59 <---------MYB52(1)         ------ <----------DOF2--------->ANAC46  <----------DOF2  --------->MYB46(3)   --------->ZAT6       <-------   caactttggcactaatcgacgacaagagtcttctttcttttatgaacaatcgaaccaaacacaaaacccggttaactgtaagaggtttaatttgaaccgg  17573200                                                     <--------P                                                    <---------ANAC58                                                    <---------ANAC58                                                    <-------GAMYB                                                   <---------MYB46(3)                                                   <------MYB46(1)                                           --------->LBD16 ---------->DOF2  <-----------GT1          --------->TOE1(3)       <------MYB83 ------>CCA1(2)            --------->AtMYB61      <---------AtMYB61 ------ARR14(2)            --------->TOE2(3) <---------TOE2(3) *TSS                       <---------- ----->ARR14(2)            <---------DAG2  ------>ZmHOX2a(1) --------->ANAC58      <---------ANAC58 --->LBD16              <---------ALFIN1 ----------->RAV1(2) --------->ANAC58      <---------ANAC58 ----->GT1        <---------ALFIN1     <-----------GT1 --------->At4g35610    <---------ATHB12    <<< --LBD16       --------->ANAC46    <----------DOF2--------->MYB59     <---------GLK1(2) <-----------GT1   atataaaccggttgaaccagacactcccaccttaactcttttttcctgaggtttggttgctcaaagcaaacaaattctcaatctttcgtttttcaccttc  17573300                                                       <---------SPL7                                              <-------TEIL                                              --------->SPL7                                          --------->LBD16                                          <---------------AtSPL3                 <-----------TGA1                                          ------>ZmHOX2a(1)                      <-----------HVH21                                      <---------ARR14(2)       <------MYB46(1)  --------->ANAC46                                      --------->ARR14(2)       <------MYB83    --------->At4g35610 --          <<<<<<<<<TBF1    <-------TEIL  <---------ANAC46  --------->ATHB12  ---------->CDC5  -------    <<<<<<<<<TBF1    <-------GAMYB --------->MYB59  <---------LBD16        --------->TOE2(3) -------- <<<<<<<<<TBF1      <---------ANAC58<------MYB83  <---------DEAR3(1) <-----------GT1  --------->DEAR3(1) -GT1  <<<<<<<<<TBF1<---------ANAC58<------MYB46(1) <---------At4g35610    --------->TOE1(3) <------- <<<<<<TBF1         <---------ANAC46<---------DEAR3(2)<---------MYB46(3)   --------->AtMYB61 <-------   ttcttcttcttcttcttcaatggcgttgatacatggttcggttcctggtacgtctgcggttcgattggttttttcaacctcagcgtcaccgtcgagattt  17573400                                                                                             <-------                                                                                      --------->ARR14(3)                                                                                      <-----------ARR10                                                                                      <---------ARR11(3)                                                                        ======================HOX2a_HOX2a                            <------MYB83                                =======================HOX2a_HOX2a                <---------REM1(1)                                       <------ZmHOX2a(1)   <--------              <---------MYB46(3)                  ----------->GT1      --------->ANAC58<------ZmHOX2a(2)         <---------LBD16    <------MYB46(1) <------NtERF2              --------->ANAC46--------->GLK1(1) -------->ID1<---------AtMYB61             --------->LBD16             --------->ANAC58<---------GLK1(1) -->GLK1(2)  --------->ALFIN1             <---------ANAC46           <-----------RAV1(2)------>ZmHOX2a(2) ->ARR11(3)  <---------DEAR3(1)          <---------LBD16        =================RAV  <---------ARR14(2) --GLK1(2)  <---------MYB52(1)       <---------ANAC58           <-----------RAV1(1)   --------->ARR14(2) --ARR11(3)--------->LBD16<--------P <---------ANAC58           <---------ATHB12      --------->ARR11(3)   tgtctcaatgttccggtggtgaagcagggttggaagaattcgtgccggagaagggttttaagagcaatggtgcaggaaacagttcaaggatctcctttgg  17573500                                 <---------GLK1(2)                                 --------->ARR14(2)                                <------ZmHOX2a(1)                                                 ---                              <---------TOE2(3)                                                   <--                              <---------TOE1(3)                                                   <--                          --------->At4g35610                                                 <------                          <---------At4g35610                                              <---------ANAC58 --------->ANAC58     --------->ARR14(2)                                      <----------DOF2<------- --------->ANAC46     <---------ARR14(2)                                 <-----------GT1   <-------GAMYB --------->ANAC58    <----------DOF2                              <---------DAG2           <---------ANAC58 --MYB52(1)         <----------DOF2                   <-----------GT1--------->YAB1    <---------ANAC58 --DOF2             <---------DAG2       --------->REM1(1)        <----------DOF2      <---------ANAC58   tttacgccagagaaatggagcgcctttctgctaaggaatcgctacttctcgctgtataacttctctcacttttataaactctttgaattacttggttgtt  17573600                     <------ZmHOX2a(2)                                            <------ZmHOX2a(1)                    --------->ARR11(3)                                           ----------->GT1                    --------->AGP1                                              <---------TOE2(3)                    <---------AGP1                                          <---------ZAT2                    <---------ARR11(3)                                      --------->ZAT2         --------->ATHB12      <-----------GT1                              <---------At4g35610 -------->GT1       --------->ARR14(2)                                  <---------SPL7 -------ANAC55(2)   <---------ARR14(2)                                 <---------ANAC46 -------ANAC46     <---------CCA1(2)                                   <---------ANAC58 -GAMYB <---------YAB1------>ZmHOX2a(2)                    <-----------GT1  --------->At4g35610 --MYB46(3)       ----------->ARR10 <---------YAB1      <----------DOF2<---------ANAC58          <---   atgtgaatatatgatttgtttagatcttcaattttactctgattttgaaattgtgtctcttttactatctctgtcgtaagctgaggataaatgggaagac  17573700                                                                                         <---------YAB1                                                ---------->DOF2                      <---------ARR11(3)                                         <---------At4g35610                         --------->ARR11(3)                                         --------->At4g35610            <---------HSFB2a(2)     -----                                 <---------GLK1(2)                ---------->DOF2   --------->YAB1          <---------ANAC46       <---------ARR11(3)       <---------AHL20(2)      <---------WOX13(1) -------DOF2                     --------->ARR11(3)    --------->GLK1(2)--------->HSFB2a(2)     <----   tttaggtgaattgtgtatttgttagatgtaatcgagattttgcagataacaaaagagaatttttttctcaaagtccagaaattgaatgatcatgtttcag  17573800  Previous    Next  AGI:  At2g42120.1    Description:  POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT); DNA binding / DNA-directed DNA polymerase. Identical to DNA polymerase delta small subunit (POLD2) [Arabidopsis Thaliana] (GB:O48520); similar to unnamed protein product [Vitis vinifera] (GB:CAO23396.1); similar to Os03g0128500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048841.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71889.1); contains InterPro domain DNA polymerase alpha/epsilon, subunit B; (InterPro:IPR007185) Range:  from: 17570235    to: 17573110    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42130.1    Description:  Identical to Probable plastid-lipid-associated protein 13, chloroplast precursor (PAP13) [Arabidopsis Thaliana] (GB:Q8S9M1;GB:O48521;GB:Q84X37;GB:Q84X38;GB:Q84X39;GB:Q8GY49); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58010.1); similar to unknown [Populus trichocarpa] (GB:ABK96151.1) Range:  from: 17573263    to: 17574744    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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