Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ANAC58                                               --------->ANAC58                                          <---------GLK1(1)   <---------ANAC55(2)                   --------->ANAC58       --------->GLK1(1)   --------->ANAC55(2)                   <                   --------->ANAC58     <------ZmHOX2a(1)   <-----------GT1                    ------                   --------->ANAC46   --------->MYB59    <---------YAB1                       -------                <---------ZAT18   <---------ICU4        <---------AHL20(2)                 <xxxxxxxxx          <---------ANAC55(2) --------->AHL20(2)      <---------YAB1                       <---------ARR14(2)          --------->ANAC55(2) <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ARR14(2)        <-----------GT1   --------->AHL20(2)   <---------ANAC55(2)                     <xxxxxxxxxxxxx        --------->AHL20(2)<---------AHL20(2)   --------->ANAC55(2) --------->ICU4     <-----------HVH21    <---------AHL20(2)    --------->AHL20(1)  <---------LBD16 --------->ANAC46        --------->LBD16    --------->AHL20(2)   --------->AHL20(2)  --------->MYB52(1)--------->TOE2(3)     --------->ANAC46   ttttttttaattacatattgcacccaaaaaaattaaaaattaggaaatcacggactattattttacgtcaaaattgtattcattttcccgtcaaaaccgc  17553200                                                                    >>>>>>>>>E2Fc                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   ---------->DOF2 ------>NtERF2                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 --------->At5g28300>>>>>>>>>E2Fd                                                ----------->GT1    --------->LBD16                                                --------->TOE2(3) --------->ANAC58                                                --------->TOE1(3) --------->ANAC46  --------->YAB1              <---------TOE2(3) <xxxxxxxxxxxxxxxxsmallRNA(i) ---------ARR11(3)        --------->YAB1--------->LBD16           --------->ANAC58 --->LBD16           --------->TOE1(3)  ------>NtERF2             <<<<<<<<<<E2Fa -->RAP2.6(2)        <----------DOF2   --------->ANAC46          <---------LBD16   --------->YAB1 xxxxxxxsmallRNA(i)  --------->TOE2(3)<---------LBD16       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxsmallRNA(i2) --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aaaatcatatttttctgttaaaactttaaaataatgtttttccgccaaaaccgtaaaaccatgttttcccgccaaaacttcaaaatcatgttttctggcc  17553300                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->At5g28300                             --------->TOE2(3)   >>>>>>>>>E2Fd                             --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             ----------->GT1     >>>>>>>>>E2Fc                      >>>>>>>>>E2Fd             --------->LBD16                      >>>>>>>>>E2Fc            <<<<<<<<<<E2Fa                     ------>NtERF2             --------->ANAC58                     --------->LBD16           --------->ANAC46                    --------->ANAC58           --------->ANAC58                    <xxxxxxxxxxxxxxxxsmallRNA(s)------>NtERF2                    --------->ANAC58          <---------LBD16             --------->ANAC58                    <<<<<<<<<<E2Fa       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->ANAC46 --------->YAB1                       --------->ANAC58                   <---------LBD16 --------->ARR11(3)                     --------->ANAC46          <          --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->YAB1             --------->YAB1   aaaacttcaaaatcatgttttcccgccaaaaccgtaaaatcatgttttcccgccaaaacttcaaaatcatgttttctcgccaaaacttcaaaatcatgtt  17553400                             >>>>>>>>>E2Fc                            ------>NtERF2                            --------->LBD16                           --------->ANAC58                           --------->ANAC46           --------->At5g28300          --------->TOE1(3)<xxxxxxxxxxxxxxxxsmallRNA(s)          --------->TOE2(3)--------->ANAC58          ----------->GT1  <<<<<<<<<<E2Fa               >>>>>>>>>E2Fc   >>>>>>>>>E2Fd          <---------LBD16              --------->LBD16   >>>>>>>>>E2Fc       <-----------GT1                --------->ANAC58  ------>NtERF2 <---------AHL20(2)                    --------->ANAC46                     --------->At5g28300  --------->LBD16 --------->ARR11(3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------- <xxxxxxxxxxxxxxxxsmallRNA(s)>>>>>>>>>E2Fd <-------TEIL------>NtERF2              ------>NtERF2 --------->ANAC58 --------->AHL20(1)  <---------MYB52(1)>>>>>>>>>E2Fd             --------->LBD16 --- <<<<<<<<<<E2Fa --------->AHL20(1)   --------->At5g28300<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---- --------->ANAC58 <---------ARR11(3)----------->GT1   <<<<<<<<<<E2Fa             --------->ANAC46<--- --------->ANAC46 <---------AHL20(1)--------->TOE1(3) --------->ANAC58          <---------LBD16 ----- ---------LBD16 <---------AHL20(1)  --------->TOE2(3)<---------LBD16   --------->YAB1     --------->TOE2(3)   ttcccgccaaaaccgtaaaatattttttcccgccaaaaccgtaaattcatgttttcccgccaaaacttcaaaatcatgtttttccgccaaaaccgtaata  17553500                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   >>>>>>>>>E2Fd                                  ------>NtERF2         >>>>>>>>>E2Fd            --------->LBD16         >>>>>>>>>E2Fc           <<<<<<<<<<E2Fa        --------->LBD16          --------->ANAC58                        xxxxxxxxxxxxxxxx>smallRNA(i)        ------>NtERF2        <-----------GT1                          --------->At5g28300       --------->ANAC46 <---------AHL20(1)                           --------->TOE2(3)       <xxxxxxxxxxxxxxxxsmallRNA(s)>>>>>>>>>E2Fc              >>>>>>>>>E2Fd       --------->ANAC58 <---------ARR11(3)                    >>>>>>>>>E2Fc                         x       <<<<<<<<<<E2Fa   --------->AHL20(1)                   ------>NtERF2                         <x       --------->ANAC58 --------->ARR11(3)                   --------->LBD16                      xxx      <---------LBD16 <---------AHL20(2)                    --------->ANAC46                     ----   <-----------GT1    --------->AHL20(1)                    --------->ANAC58           --------->LBD16 >GT1>>>>>>>>>>E2Fb   <---------AHL20(1)                    <xxxxxxxxxxxxxxxxsmallRNA(s)        ----- ------>YAB1     --------->At5g28300                        --------->ANAC58           ------>ZmHOX2a(1) -----ARR11(3)  ----------->GT1 <---------LBD16             <<<<<<<<<<E2Fa <---------ARR11(3)-------- ------YAB1     --------->TOE2(3)--------->ANAC46          <---------LBD16 --------->ARR11(3)<------- ---->ARR11(3)  --------->TOE1(3)--------->ANAC58 --------->YAB1     ----------->GT1  <---------LBD16   tcatatttcccgccaaaaccgtaaaatattttttcccgccaaaacttcaaaatcatgttttcccgccaaaaccgtaatatcatgttttcctggcaaaacc  17553600                          --------->YAB1                    --------->ANAC58                    --------->ANAC58                >>>>>>>>>E2Fc                >>>>>>>>>E2Fd               ------>NtERF2              --------->ANAC58                     --------->At5g28300              --------->ANAC58                    ----------->GT1 <-----------GT1    --------->YAB1---------->DOF2         --------->LBD16    <---------AHL20(2)               ------>MYB46(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC46 --------->AHL20(1)         <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------LBD16   <---------ARR11(3)       --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <<<<<<<<<<E2Fe     <---------AHL20(1)       <---------AHL20(2) xxxxxxxxxxxxxxxsmallRNA(i)            <<<<<<<<<<E2Fd     --------->ARR11(3)      <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <<<<<<<<<<E2Fa   <---------AHL20(2)  --------->At5g28300 ----->LBD16  --------->ANAC46         <<<<<<<<<<E2Fc   <---------AHL20(1) --------->TOE1(3)  ------>MYB83 ---->RAP2.6(2)--------->LBD16       *TSS--------->LBD16--------->AHL20(1) ----------->GT1  <-------- ->ARR14(2)   <<<<<<<<<<E2Fa <---------ARR11(3)   --------->TOE2(3)        --------->TOE2(3)<-------- --ARR14(2)  <---------LBD16 --------->ARR11(3)   --------->TOE1(3)  --------->AtMYB61   <-----------GT1   gcaaaatcatgttttcccgccaaagccataatatcatgttttcccgctaaaaccgtaaaatatttttttcaccaaaaccgtaaaattatttttacctact  17553700                                                                  --------->TOE2(3)                                                         <---------TOE2(3)                       ----                                           <---------AHL20(2) <---------AHL20(2)               <-----   --------->ALFIN1             --------->YAB1  <-------TEIL --------->AHL20(2)        <---------HSFB2a(2) -MYB111(1)                    --------->AHL20(2)   --------->ATHB12     ----------->GT1     -------- -MYB59             --------->YAB1         --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aaaatgtggacgaactacaaaataatcaaacaaataaaaatccatttaaatgcatcatttagattaaatctcaaatggttaaacaaatactagaaacatc  17553800                                                                  --------->MYB52(1)                                                                <---------MYB52(2)                                                         --------->YAB1                                                        --------->ICU4                                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            --------->YAB1 <---------YAB1                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                        <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------AHL20(2)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-------TEIL     --------->YAB1     <---------AtLEC2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->WOX13(1)     ------->TEIL        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----YAB1    --------->AHL20(2)    --------->ATHB12   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        -- ->YAB1  --------->ATHB12         <------ZmHOX2a(2) <---------------AGL15        <---------HSFB2a(2)   attcaaatgcatcatttaaatgaatcatgtaaatggatcatttgaatgaaaatgctaaatgatgaaacaaacagagcctaagtcgagaaattgtttttca  17553900                                                          ------->TEIL                                                       <---------ANAC58                                                       <---------ANAC55(1)                                                       --------->ANAC55(2)                                                       <---------ANAC55(2)                                                       <---------ANAC46                        ======                                              --------->ARR14(2)                             --------                                   <---------ATHB51    <---------ANAC58                --------->REM1(1)                       --------->YAB1         --------->ARR11(3)          >>>>>>>GRF7----------->RAV1(1)           <-----------GT1 <---------ARR11(3) <---------ARR14(2)         <-----------RAV1(2) <-------    <---------------------WRI1     <---------ATHB12 <---------MYB52(1)   ========================RAV    --------->SPL7     <---------ICU4<---------TOE2(3)--------------->AtSPL3--------->ARR11(3) ------ ------->MYB52(1)     <---------YAB1--------->YAB1<---------ZAT6       <-----------HVH21<---------ARR11(3)   cttacggacgatataaccaaaactatcatgaccttcaataatgtagaatatactgttacgtacttggtcttggtgtcaggtcttgtgcaacatctgatct  17554000                                            <---------HSFB2a(1)                                            <------MYB83                                            ----------->GT1                                            <------MYB46(1)                                       <---------HSFB2a(2)                                       --------->HSFB2a(2)         <------ZmHOX2a(1)         <----------DOF2                                              -----      --------->CCA1(2)          ------->TEIL                                                 <------ ===============HOX2a_HOX2a <---------ANAC46--------->HSFB2a(1)      ------------------------>ANAC81 ->ARR11(3)      ---------->ID1--------->ZAT14                     ---------->DOF2           <------- --ARR11(3) <---------ARR14(2) <---------ZAT18                XXXXXXXXXXXXXXXXXXX>MIR157D    -------- >ZmHOX2a(2)--------->ARR14(2) <---------ZAT14                XXXXXXXXXXXXXXXXXXX>MIR156H   ---------   tggtcgagataggagatttgttcccttgttctgtgtactttgtggaaggtttttatatgtatgacaaaaaaaagaaaacaaaacaaaacaaaactacgta  17554100  Previous    Next  AGI:  At2g42050.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35860.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37570.1); similar to FMRFamide-related peptides type HF-4 precursor (HeptaFaRP) [Contains: FMRFamide-like; ENNNGYIRF-amide; NDPFLRF-amide; QDPFLRI-amide; QDPFLRF-amide; KQDPFLRI-amide; SEPYLRF-amide; NDPYLRF-amide] (GB:Q07981); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529) Range:  from: 17553218    to: 17553637    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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