Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    --------->ANAC46                                                                          --------->ANAC58                                                                          --------->ANAC58                                                              --------------->AGL15         ------>ZmHOX2a(2) <---------ANAC46                                             <---------------AGL15         ========= ------At4g35610              <---------MYB52(1)             ----------------->AGL2       --------->ARR11(3) ----->At4g35610             <---------SPL7          --------->At5g28300 <-----------------------TaNAC69(2) ----->ZAT2             ----------->HVH21           ----------->GT1 --------->ZAT6--------->ANAC58 ------ZAT2       <---------------AtSPL3         <------ZmHOX2a(1) <---------YAB1 --------->ANAC58--- -ZmHOX2a(1)   --------->ALFIN1            --------->MYB52(1)----------------->AGL3       --------->AGP1   gctgggtatgggtaagggtatgggtactgaccgtaagggtatggataacgaggaccgtgattatccattatcagtaacgcatataagctactgatctaga  17545100                                                   --------->YAB1                                                  --------->MYB46(3)                                                  <---------ATHB12                                            --------->YAB1                          --------->ANAC58 <---------ATHB12                        ---------->DOF2  --------->WOX13(1)            --------->At4g35610        <------ZmHOX2a(2)            <---------At4g35610       --------->ARR11(3)                          --------->GLK1(2)            <---------ZAT14     --------->ANAC58 ------>MYB46(1)                 <---------GLK1(2)            --------->ZAT14     --------->ANAC58 ------>MYB83             <---------ATHB12         =====================================HOX2a_HOX2a           --------->ANAC46         ------>ZmHOX2a(1)--------->ANAC58 --------->MYB46(3)       --------->ANAC58 <-----------TGA1 ===============HOX2a_HOX2a   ---------->DOF2   --------->WOX13(1)  --------->ANAC58--------->YAB1 -------->GT1         <-------TEIL    <---------ARR11(3)     <---------ZAT6--------->YAB1   gagtttatttcctctgcagagagattcaaagcaaaagcaagatcaatcaccaatcaacaagtagtattactcgcaaatcataagaatcgtcacaatattc  17545200                                                                      --------->LBD16                                                                     <---------------AGL15                                                                  <-----------GT1                                                                <---------GLK1(1)                                                               --------->ARR14(2)                                                    ------>ZmHOX2a(1)--------------->AGL15                                                   --------->TOE1(3)<---------LBD16                                                   --------->TOE2(3)----------------->AGL1 --------->ANAC58                                       <---------AHL20(1)      <---------ARR14(2)          --------->ANAC46                ---------->DOF2        --------->AHL20(1)  <-------PIF5                    --------->ANAC58            <------ZmHOX2a(2)         --------->AHL20(2)   ------->PIF5              --------->AHL20(2)   gtcttgcgatttagatcagaaagatagaacacaaaccaaaatatatatcaattccttagctcgtggattttcccgattgagaacaaataaaacacccaaa  17545300                                           --------->ANAC58                                           --------->ANAC58                                     --------->TOE1(2)                           <------MYB83                                     <---------LBD16                             <------MYB46(1)                                     --------->TOE2(2)                 --------->ARR11(3)                                    ----------->RAV1(2)                <---------ARR11(3)                                   ------->TEIL           --------->ALFIN1    <---------ANAC58      -                                   -------->P           <---------ANAC58      <---------ANAC46      -           ---------->DOF2     --------->GLK1(2)        <---------ANAC46      <---------ANAC58 ------  ----------->GT1            <------ZmHOX2a(1)          <---------ANAC58--------->GLK1(2)     <------   tatgaagaaaaatcaaagagagggagagggaggaatctacctgggaagaaatttgcaagcgtggagttatggagattttggcttggtattgtattgatcg  17545400                                                                              *TSS                                                                             --------------->AGL15                                                                             <---------------AGL15                                                                            <-----------------AGL1                                                                        --------->GLK1(1)                                                       --------->WOX13(1)   ----------------->AGL1                                               <---------GLK1(1)       --------->ARR14(2)           --------->GLK1(2)                   --------->GLK1(1)       <---------ARR14(2)       >>>>>>>>>TBF1                          <---------ARR14(2)     --------->LBD16      --------->AHL20(2) -------->ANAC58             ---------->DOF2  --------->ARR14(2)   <---------LBD16        <---------AHL20(2) -------->ANAC58     --------->ARR11(3)     --------->LBD16     ---------->DOF2      <------ZmHOX2a(1) >ZmHOX2a(2)    <---------ATHB12          <---------LBD16       --------->CCA1(2) --------->CCA1(2) ---WOX13(1)  --------->WOX13(1)       --------->CCA1(2)   ---------->DOF2  ----------------->AG   acacgagaagaagaatcaatgaagaaattggaaaagaagagaaacgcggatttctattaatcaaagaaacgcggatttaccaagataggaaattaaacaa  17545500                                 <-----------GT1                                <-------TEIL                              --------->ARR14(2)                              <---------GLK1(2)                      --------->MYB52(2)                  <---------ANAC58                  <---------ANAC46         --------->ANAC58  --------->HSFB2a(2)         --------->ANAC58  <---------HSFB2a(2)                                --------->TOE2(3)     <------ZmHOX2a(1)<---------MYB46(3)                                      --------->TOE1(3)    <------MYB46(1) <---------MYB52(1)                               <---------MYB52(1)    <------MYB83 <---------TOE2(3)        --------->MYB52(2)     <-----------GT1           <---------YAB1   --------->MYB59<---------ANAC58       <-------TEIL            ---------->ID1          <---------AHL20(2)  <--------P <------------CBF <---------ARR14(2) <----------DOF2<-----------GT1      --------->AHL20(2)   ggaggtaggacaagttattgacgtttgttccagattcaccaagttcgtttccttttttgctcattttttcccttattcaaccttcaaatatttattctta  17545600                                                                             <---------ANAC58                                                                             <---------ANAC58                                                                     <---------TOE2(3)                                                               --------->AHL20(2)                             <----------DOF2 <-----------GT1   <---------AHL20(2)                        <------------MYB.PH3(2) --------->WOX13(1)  <-----------GT1              <---                      <-----------GT1    <---------GLK1(2)    --------->AHL20(2)    <----------------                 <---------YAB1      <------ZmHOX2a(2)  --------->YAB1--------->ANAC55(2)        ----  <---------GLK1(1) <---------WOX13(1)   --------->ARR11(3)   <---------AHL20(2) <---------CCA1(2)   ctagatttcagatagtattttgattaacaaactttttagatcagatttttcaatctatttataaaaaaatttacgttttgcttctatcttcaattggcta  17545700                                                                                            <-------TEIL                                                                                            <xxxxxxxx                                                                                           --------->GLK1(2)                                                                                           --------->CCA1(2)                                                                                          --------->ARR11(1)                                                                                         <xxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  <xxxxxxxxxxxxxxxxxx                               <-------GAMYB                                      <xxxxxxxxxxxxxxxxxx                              --------->MYB52(2)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                              ----------->GT1                                     <xxxxxxxxxxxxxxxxxx                              <------MYB46(1)         ----------->GT1             <xxxxxxxxxxxxxxxxxx                              <------MYB83           <------NtERF2                <------NtERF2        <---------AtLEC2      <---------MYB46(3)  --------->LBD16                 ----------->RAV1(2) ------STY1(2)              <--------P  <-----------GT1   --------->YAB1         ------>NtERF2  <xxxx -AGL3------>ZmHOX2a(1)  <---------TOE2(2)        ------>NtERF2                  <xxxxxxxxxxxxxxxxsmallRNA(s) ----->STY1(2)          <-----------RAV1(2)     <---------LBD16----------->GT1<-----------HVH21<xxxxx   tctagctcctgcatgaacagagggacacaggttggttacaatttacaaaccccgcgtcgataaaaatgtaaaatagaattcgtcgcctgagagattcgaa  17545800            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         --------->GLK1(1)         <---------GLK1(1)     <------NtERF2    --------->LBD16   <---------ANAC46                             ------>NtERF2  <---------LBD16                               <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxsmallRNA(s) xxxsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(s) xxsmallRNA(s)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxsmallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xsmallRNA(i)                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xsmallRNA(s)     <---------AHL20(2)     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(fl3)                   --------->MYB46(3) xxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(fl3)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxsmallRNA(fl3)             ------->GAMYB<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxsmallRNA(fl3)           --------->ANAC46                          ----------->RAV1(1) xxxxxsmallRNA(si3)              --------->ANAC58             *TSS     <---------WRKY38(1) xxxxxxxsmallRNA(le3)      --------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(se3)    --------->ANAC58  <xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxsmallRNA(se3)  --------->At4g35610 <xxxxxxxxxxxxxxxxxxsmallRNA(se3)        <----------DOF2 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58  ---------->DOF2    --------->WRKY18(1) xxxxxxxxxxxsmallRNA(s) --------->ZAT2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB46(3)     ----   ctctcgcggggaaaccccatttacttagcaggcaaacgccttaaccactcggccaaagcgacgttttgtccagtcaacaacaaaaacttttatattctat  17545900                        >>>>>>>>>>WRKY63                --------->LBD16           <---------MYB59                ------>NtERF2 --------->At4g35610               --------->ANAC58           ------->GAMYB               --------->ANAC46         --------->MYB52(1)               --------->ANAC58--------->MYB46(3)               --------->RAP2.6(2)     ------->GAMYB               --------->RAP2.3(2)    --------->MYB46(3)             ----------->GT1            -----             ------>NtERF2  --------->MYB46(3)                ---------->DOF2          ------>ZmHOX2a(1) --------->ANAC46     --------->ANAC58<---------MYB52(2)   ===================================HOX2a_HOX2a --------->ANAC58     --------->ANAC58<---------MYB55(2)   <------ZmHOX2a(2)      <---------CCA1(2)-- --------->ANAC58 ----------->RAV1(1) <---------MYB111(2) --------->AGP1   <-----------GT1  <-------- ----->YAB1  --------->At4g35610------->GAMYB             <---------ARR11(3)     --------->ARR14(2)<-   cacaagtcaaaactctgccgcaacaagtcaacaactgccaacaaccgaattcattcaccagatcaaaagaattgaaaaaaccatatatcctattgatgta  17546000  Previous    Next  AGI:  At2g42010.1    Description:  PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D. Identical to Phospholipase D beta 1 (PLDBETA1) [Arabidopsis Thaliana] (GB:P93733;GB:P93745); similar to PLDBETA2 (phospholipase D beta 2) [Arabidopsis thaliana] (TAIR:AT4G00240.1); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to phospholipase D beta 1 isoform 1a [Gossypium hirsutum] (GB:AAN05430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24458.1); similar to phospholipase PLDb2 [Lycopersi Range:  from: 17539891    to: 17545478    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42020.1    Description:  pre-tRNA. tRNA-Ser (anticodon: GCT) Range:  from: 17545781    to: 17545862    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42030.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G58030.3); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G58030.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G58030.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO23410.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17545984    to: 17548044    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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