Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <---------HSFB2a(1)                                        --------->HSFC1(2)                                        --------->HSFB2a(1)                                        <---------HSFC1(2)                                    --------->LBD16                                   --------->ANAC58                              --------->ATHB12                              <------------ATHB5                              --------->YAB1                 --------->ANAC58  --------->ANAC58                 --------->ANAC58  --------->ANAC55(2)             <---------RAP2.6(3)   --------->ANAC46                                             <----      --------->MYB59         <--------ATHB1                       <-----------GT1 <------NtERF2-----      <---------------AtSPL8  <---------ICU4                   <---------TOE2(2) <---------RAP2.6(2) ---->ANAC58<---------ATERF1(2)    <---------ANAC55(2)         <---------TOE1(2)--------->RAP2.6(3) ---->ANAC58--------->ATERF1(2)   <---------LBD16        --------->YAB1  <---------ZAT2         ----- ---ALFIN1 --------->DEAR3(2)--------->ICU4            --------->ANAC58 ------>MYB83<---------ANAC46 ->HVH21  --------->MYB52(1) <---------ATHB12          --------->ANAC58 ------>MYB46(1)         <----   cctaaattttggtaccggcatggaacttccaatgattccgcaaccttctcaagagccaagcatcttatgttaccaagctcatagcggcatgtagggcatg  17531400                                              --------->ZAT18    <---------ALFIN1                          <---------ZAT18   <---------ZAT14                        --------->SPL7   <---------ZAT18                       <---------MYB52(1)   --------->ZAT14                       <---------ARR14(2)   --------->ZAT18                      <---------RAP2.6(3) ---MYC2           --------->At4g35610  <---------SPL7 -->MYC3           --------->ZAT2<-----------RAV1(1)                                             ---- -->MYC2           <---------ZAT2--------->ALFIN1                  --------->YAB1                ---- ---MYC3           <---------At4g35610 <---------MYB46(3)      --------->MYB46(3)       --------->MYB52(1)   tgttctgcactctcagtttgcagcttgaacacaatgtgtggccgttcgggcactatgggaaattaacaaacatagatgtcaacatgaaataaacgaagaa  17531500                                                    --------->MYB46(3)                                               --------->ANAC58                                        ---------->DOF2                                      --------->ANAC58                             <---------------AtSPL8                                  ----------->GT1   <---------MYB52(2)         <---------AHL20(2)                                  <---------ANAC55(2)------->GAMYB             <---------AHL20(1)                                  --------->ANAC58----------->RAV1(1)          --------->AHL20(2)                                  --------->ANAC58==================RAV       --------->AHL20(2)                                <------ZmHOX2a(1)<----------ID1           <-------TEIL            <-----------GT1 <------ZmHOX2a(2)  --------->ANAC58         --------->ARR14(2)        --------->YAB1     --------->ARR11(3) --------->DAG2            <---------ARR14(2) ----->ANAC58         <-----------GT1 --------->ANAC58  ----------->RAV1(2) --------->TOE2(3) ------- ----->ANAC58------->TEIL  <---------ARR14(2)---------->DOF2           <------ZmHOX2a(1)   --------->MYB52(1)   cgaaactcaagaatgaaccatattttacagatcaggacgtaagaaagaaaagcaacaaacctgatgaattggaggatacattaaatttgtacaaaccgga  17531600                                                                  <------MYB46(1)                                                                  <------MYB83                                           <---------ATHB12       <---------MYB46(3)                                      <<<<<<<<<<<<<<<<<LFY    <-----------RAV1(1)                                   --------->HSFB2a(1) <---------MYB59       --------->At4g35610         <---------HSFC1(2) ====================RAV                  ------       <---------At4g35610         --------->HSFC1(2)--------->MYB52(1)               --------->TOE2(3) -->LBD16       --------->ANAC46   <---------HSFB2a(1)----------->RAV1(2)       --------->TOE2(3) <--   cattcaaggagctcataaacaccattgctcgaatggaattttccaatggagccactacctgattttgttggtttgctattagcctcaacctttgccatct  17531700                                               --------->ZAT14                                        <----------DOF2                                    <XXXXXXXXXXXXXXXXXXXXMIR159B              ----------->RAV1(2)  <XXXXXXXXXXXXXXXXXXXXMIR159A            --------->ANAC46      <---------ARR11(3)        <------ZmHOX2a(1)            --------->ANAC58   <---------HSFB2a(2)       <-----------RAV1(2)       <-----------ARR10       --------->HSFB2a(2)     ------>NtERF2 --------->TOE2(3)       ----------->ARR10     --------->ZAT18 --->YAB1   --------->ANAC58--------->GLK1(2)  <---------ZAT18                    ------>MYB83  <---- ---------GT1------>NtERF2 <---------GLK1(2)   <---------ZAT14                    ------>MYB46(1)   taacctcataatctacgcctgtcgagttagattctagagcttctttcaatgcactgccaccaggagccatagagagtccaaacctagccaaaacttgttt  17531800                                                 --------------->AtSPL8                                                 --------------->AtSPL3                                             <---------At4g35610                                             --------->At4g35610                      <---------ARR14(2)   <-----------RAV1(2)      <---------ARR11(3)           --------->ANAC58           <-----------RAV1(1)           --------->ARR11(3)           ----           --------->ANAC58      ------>ZmHOX2a(1)   ------->TEIL   <---------AHL20(1)           ----       ------->GAMYB <---------GLK1(1)=================RAV<----------DOF2                    -------- -----AHL20(2) ----------->GT1 <---------ZAT18   <---------------AtSPL8    <----------DOF2   <-------   tatttctaacagcaagtaagtgaaaatccctagtcctctcttgttgcagatgatgtactcctttcgatgatatattcctttggaacttcgttcttctgca  17531900                                                         --------->ANAC58         -------->HAHB4                                  ----------->GT1         --------->ATHB12                             <---------ZAT2         <---------ICU4                              --------->ANAC58        <---------ATHB12          <------ZmHOX2a(1)  --------->ANAC58                            <---        --------->ICU4          <---------TOE1(3)--------->ANAC58                              ------ ----->ANAC58                   <---------TOE2(3)--------->ANAC46                          <------MYB46(1) ----->ANAC58           ----------->RAV1(1)      --------->ANAC58   ----------->GT1        <------MYB83 ->HSFB2a(2)           --------->ANAC46    ------------>CBF         --------->MYB52(2)    --------->MYB59 --HSFB2a(2)         <-----------GT1       <---------YAB1--------->ANAC58            ---------->DOF2   agaaaaacaaatgatggctaaatatacaacatttaaggaaatgttatcaataagcaagcaggtaacatgttagttaaaaaactggagcaaagtaggttag  17532000             <---------ZAT18             --------->ZAT18             <---------ZAT14         --------->ALFIN1       <---------ANAC46       <---------ANAC58       <---------ANAC55(1)       <---------ANAC58       <---------O2       --------->ANAC55(2)                                  <---------ARR11(3)<---------ZAT14       <---------ANAC55(2)                 --------->LBD16  --------->ARR11(3)--------->ZAT14      <-------TEIL                        --------->HSFB2a(2)            <---------ZAT14     --------->CCA1(2)                    <---------HSFB2a(2)        --------------->AtSPL8    --------->ARR11(1)                   <---------LBD16   --------->YAB1--------->ZAT14    --------->ARR14(2)                <----------DOF2     <---------ATHB12  --------->ANAC46    <---------ARR14(2)            <----------DOF2     ------------>CBF   <---------ZAT18  ----------->ARR10       <---------ARR11(3)       <----------ID1    --------------->AtSPL3 ---ZmHOX2a(1)            --------->ARR11(3)    --------->DAG2       --------->ZAT6    --------->ARR14(2) --->MYB59   --------->ZAT14 <----------DOF2   ---------->DOF2------>ZmHOX2a(2)        <---------ARR14(2)   gaagtagatacgtggtgcacttgatcaagttcttttctttctttccggaaaaagggaccaatgatctcttagcagtacaccatactgcaaatccagtctt  17532100             --------->AtLEC2               <------ZmHOX2a(1)                                     ---             --------->ANAC58           <---------MYB52(1)                                      -----             --------->ANAC58    <---------ALFIN1                                             -------      <---------ANAC58      <---------At4g35610      --------->ARR14(2)            --------->KAN4(2)      <---------ANAC58      --------->ZAT2 ----------->GT1  ----------->GT1      <-------TEIL--------   <---------MYB52(1)       --------->At4g35610     <------ZmHOX2a(1)<---------TOE2(3)     <---------ATHB12  <-------GAMYB--------->YAB1 --------->ANAC46  ---------->DOF2    <---------AHL20(2)    --------->WOX13(1)   ataccgttgcggtccaagcatataaaacgtagcagccacttcgttaggaaaaaaggatagtcttgtgaattaatgtgactaagttcattcccaatcaact  17532200                                    <---------ANAC58                                    <---------ANAC58                                    <---------ANAC55(1)                                    <---------ANAC46                                    <---------ANAC55(2)                                    --------->ANAC55(2)                                         -----                                <-------GAMYB--------->PCF2                                     <----                               ======================RAV                                       ------       ----------->RAV1(1)  ------->TEIL   --------->At4g35610                                 <----- ------->DOF2             ------->PIF5     <---------At4g35610                               <------- -->GAMYB<---------ALFIN1 <-------PIF5    <---------TOE1(2)                             ------------>MYB.PH3(1) -->At4g35610            --------->ANAC46<-----------RAV1(2)      ------>ZmHOX2a(1)----------->GT1 <- ->MYB52(1)    <----------DOF2 <-----------RAV1(1)  <---------GLK1(2)         --------->MYB52(1)-----   gaaagttgccaacacatctttctttccacgagcctgttgcgtctcaggtccctcgattcttcacaatcctttctaaatgctagcggagtaaaacagttat  17532300  Previous    Next  AGI:  At2g41980.1    Description:  seven in absentia (SINA) family protein. Identical to Putative E3 ubiquitin-protein ligase SINAT1 (SINAT1) [Arabidopsis Thaliana] (GB:P93748); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G58040.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain TRAF- Range:  from: 17530572    to: 17531770    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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