Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        ------>MYB83                                      ------>MYB46(1)                                    --------->MYB46(3)                                --------->WRKY38(1)                      <-----------GT1                                --------->WRKY45                     <---------YAB1                                ----------->HVH21              --------->ICU4          ---------->DOF2       --------->WRKY12               <---------YAB1     --------->TOE2(3)       ----------->RAV1(1)    <----------DOF2            --------->DEAR3(2) --------->TOE2(3)    ------->GAMYB             ------>ZmHOX2a(1)--------->MYB52(2)<---------ARR11(3)     <-----------RAV1(1)   --------->MYB46(3)------->TEIL<---------WRKY18(1)    ------->TEIL<-----------GT1------>ZmHOX2a(1)   ctccaacgacaacaaaggccttgaatctagtcctttgaccagccctggtttgtttctgaaccggcatgattttcattacctcatccttcaatgttggacc  17468200                                                                                   <---------TGA1a                                                                                   --------->TGA1a                                                                                   <---------O2                                                                                   --------->bZIP60(2)                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                   --------->O2                                                                                   --------->ANAC58                                                                                <------NtERF2                                                                               ------>NtERF2                                                                               <---------RAP2.6(3)                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                              --------->DEAR3(1)                                                                              --------->ATERF1(2)                                                                              --------->ANAC58                                                                              <---------ATERF1(2)                                                                              ===============MYC_MYB                                                                              ------->GAMYB                                                                              --------->RAP2.3(2)                                                          --------->ARR14(2)  --------->RAP2.6(2)                                                       ======================================bZIP_DOF                                                       <----------DOF2        --------->RRTF1(2)                                                     --------->At4g35610      --------->RAP2.3(3)                         ================================HOX2a_HOX2a         --------->ERF1                         ------>ZmHOX2a(1)         ------>ZmHOX2a(2)         --------->RAP2.3(1)                         =================================HOX2a_HOX2a        --------->MYB46(3)                        --------->TOE1(3)         <------ZmHOX2a(2)          --------->RRTF1(1)                        --------->TOE2(3)         --------->CCA1(2)         --------->ZAT2                <---------------AtSPL8           --------->AGP1             <---------At4g35610                --------------->AtSPL8           <---------AGP1             ------>MYB83            <               ------>ZmHOX2a(2)                 <---------ARR14(2)         ------>MYB46(1)        <-               =================HOX2a_HOX2a      --------->ARR14(2)         <---------ATERF1(1)    <-             <---------ARR11(3)            <---------YAB1 <---------ARR14(2)--------->At4g35610------             --------->ARR11(3)--------->LBD16   --------->ARR11(3)       --------->MYB46(3)  ------>MYB83            --------->YAB1    <---------LBD16    <---------ARR11(3)   ----------->HVH21       ------>MYB46(1)           <---------ATHB12  <---------LBD16   ----------->ARR10<---------WOX13(1)------>NtERF2<-----   gatgagcatatcaatgatctggtactccttaaccgggagtgaatgaagatagatctgctctatctgcttgatatgaccagccgccacgagacgaccaagc  17468300                                                                                                -----                                                                                                -----                                                                                  ------>ZmHOX2a(2)                                                                                  ===================                                                                                 --------->GLK1(1)                                                                                 ====================                                                                <-------PIF5     <------ZmHOX2a(2)                                                      --------->ANAC58   --------->ANAC46       -----                                                --------->MYB46(3)   --------->ANAC46         <------                                             --------->DEAR3(1) ------->PIF5    --------->ARR14(2)                                     --------->ANAC46 --------->ANAC46  --------->DEAR3(1) --------->AtMYB61                                    --------->DEAR3(1)--------->ANAC58------>NtERF2     <---------ALFIN1                                 --------->ANAC58   --------->AtMYB61--------->ANAC58  --------->ANAC58 -----------HVH21                --------->ANAC46   <---------ALFIN1 --------->ANAC58  --------->ANAC58 -----MYB46(1)               <-----------HVH21------>NtERF2    --------->ANAC46 <---------ARR14(2) -----MYB83             --------->ZAT14   --------->ANAC46   <---------ALFIN1   --------->ARR11(3) --->ZAT2               <---------ZAT14 <---------ALFIN1  --------->RAP2.6(2)   <---------ARR11(3) ----ZAT2     <---------CCA1(2)  --------->ANAC58--------->AtMYB61 <---------ALFIN1    --------->ANAC46   ttggtcactggaacccatttctcttcttcactggcacgccctccacgacgaccaccacggcctccacgtccacgccctccacgatctccacgacctccac  17468400           --------->TOE2(1)          --------->ANAC58           --------->TOE1(1)          --------->ANAC58              ------>NtERF2      --------->ARR14(2)   <-------MYC2                     <---------ALFIN1      <---------ARR14(2)   <-------MYC3            ------->MYC2  --------->SPL7      <---------ARR11(1)<---------ALFIN1        <---------ALFIN1 <-------TEIL ---->ANAC58         <-----------GT1<---------ALFIN1     <---------ALFIN1                        <--- ---->ANAC46  --------->SPL7       --------->ANAC46<-------MYC2------->MYC2                      ---- ================HOX2a_HOX2a     <---------ALFIN1  ------->MYC3<-------MYC2                   <------ ================HOX2a_HOX2a     --------->ANAC46  <-------MYC3<-------MYC3                   ------- ---->ANAC58<---------SPL7 ------->MYC3      --------->ANAC46  ------->MYC3              ---------->DOF2 ---ALFIN1------>ZmHOX2a(1)------->MYC2 --------->ANAC46 --------->ANAC46     <---------------------WRI1   ggcctccgaatcctcgtccgaaatcaccacgttctccaccacgctcaacaccacgttctccaccacgttcggccattgtcgaagagtagttcaaagagct  17468500                                                                                                   --                                                                                                <----                                                                                         ------------                                                                                       --------->At4g35610                                      <------ZmHOX2a(1)                             --------->At4g35610                                --------->ANAC55(2)                                 <---------ZAT2 <-                                <---------ANAC55(1)                                 <---------At4g35610       --------->ALFIN1         <---------ANAC46           <------NtERF2            ----------->RAV1(2)    --------->ATHB12            <---------ANAC58          --------->LBD16           --------->ZAT2<-- ------At4g35610                <---------ANAC58         <---------ANAC46<---------AHL20(1)    ------ ----->At4g35610            <----------DOF2              <---------RAP2.6(2)      <-----------RAV1(2) ---At4g35610              <---------ANAC58             <---------LBD16  --------->ARR11(3) --------- -->At4g35610              <---------ANAC58      --------->TOE2(3)       --------->AHL20(1)--------->REM1(1)   gctgaatcagtgggagactgcgatgtattgctttgcgtgaggaagagaaaaccctagttgcggcaaattgggatatatattgctccagctgctacaataa  17468600                                                                                                -----      <---------TOE2(3)                                                                      -------- ------->ARR11(3)                                           <----------DOF2               --------->TOE2(3) -----TOE2(3)              <---------ANAC58               ----------->GT1                --------->ANAC46 --->AGL15                 <---------ANAC46             <---------ZAT18                  --------->ANAC58 --------ARR11(3)          <------MYB46(1)              --------->ZAT18                  --------->ANAC58 ----ZmHOX2a(1)  *TSS      <------MYB83                --------->ALFIN1            <-----------HVH21 --->YAB1     ---------->DOF2                       --------->DAG2       <<<<<<<GRF7   <---------ALFIN1 >YAB1<---------TOE1(3)    <---------ANAC58        ---------->DOF2     ----------->HVH21<---------TOE1(2)   ggatttttagggtttctaaaggccttgttgggtttgttttggtaacttaaacagaaagtgggcttaaatgggcctgacattctaatgtcacacgttaatc  17468700                                        ------->TEIL                          <---------------AGL15                          --------------->AGL15                          --------->TOE2(3)  <----------DOF2                          --------->TOE1(3)  <---------DAG2                         ----------------->AGL2      --------->YAB1     ----------------->AGL3            --------->TOE2(3) ---->YAB1         <-------TEIL         <-----------GT1    <----------DOF2                        <-- ->WOX13(1)    --------->DAG2  ---------->DOF2          <-----------GT1                       -------   agaacaaataataccataaggtccataaccttataaagaatgtatccctttattcatataactttagataaacaatttagtatgtaagaatacaaataaa  17468800                                                                               <---------AHL20(2)                                                                              <---------AHL20(2)                                                  <---------YAB1          <---------MYB52(1)                                                  <---------ATHB12   --------->ARR14(2)                                                ------>ZmHOX2a(1)    <---------ARR14(2)       <------ --------ID1                               --------->YAB1            <---------ARR11(3)       ------- -->AHL20(2)                       ------>ZmHOX2a(1)   --------->YAB1--------->ARR11(3)    ------->TEIL   acaacaaatctcaagaacattgtttatacatgtattcctatactataatcctataattcatagttagacaatatctgttatttattgtccatgtatatat  17468900                                                                                   <------ZmHOX2a(2)                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                          --------->CCA1(2)                                                            ------->TEIL  <---------------------WRI1                                                  <---------ARR11(3)     <---------AGP1        --------->YAB1                            --------->ARR11(3)     --------->AGP1--------->ANAC46  --------->ANAC46                               <---------CCA1(2)       <---------ARR11(3) ---AHL20(2)                                 --------->AHL20(2)          --------->ARR11(3) -->AHL20(2)      <---------AHL20(1)         <---------AHL20(2)       <---------WOX13(1)   atatccacaagtatatttagtatattttgtaatcgatctatctgtatttatatatctatatgtatgtgtttgatagatctaagcgatctaagtaactaag  17469000                                  <---------ALFIN1                                  ------->GAMYB                                       --------->ANAC58                                  ----------->RAV1(1)                                 --------->ANAC58                                 --------->MYB46(3)                                   --------->AtLEC2                                -------->P                             <---------TOE2(3)--------->YAB1                               --------->WOX13(1)                  <----------DOF2   --------->WOX13(1)                               <-----------GT1            <----------DOF2           ---------->DOF2                         <----------DOF2                  <---------DAG2   <---------ZAT18                         <---------DAG2                  <---------ANAC58  --------->ZAT14      <----                    --------->At4g35610      <---------AtMYB61  ------>ZmHOX2a(1) <-----------HVH21    --------->ZAT18 <---------At4g35610  <---------YAB1  <---------ANAC58  --------->ZAT18      <----   tggagttgcactgaggcagaacagctcctttatcaaccacattagcattggtgcaagttgcttttcctcctttaatgttcactctgtcaagcacaattcc  17469100  Previous    Next  AGI:  At2g41840.1    Description:  40S ribosomal protein S2 (RPS2C). Identical to 40S ribosomal protein S2-3 (RPS2C) [Arabidopsis Thaliana] (GB:P49688;GB:O22936); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to unknown [Populus trichocarpa] (GB:ABK94437.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79008.1); contains InterPro domain Ribosomal protein S5, eukaryotic/archae Range:  from: 17466866    to: 17468617    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g41850.1    Description:  PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase. similar to ADPG1 (endo-polygalacturonase 1), polygalacturonase [Arabidopsis thaliana] (TAIR:AT3G57510.1); similar to endopolygalacturonase [Brassica napus] (GB:CAC05657.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 17468733    to: 17471239    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version