Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     --------->TOE1(3)                                                   --------->TOE2(3)                                                   --------->YAB1                                                ------>MYB46(1)                                                ------>MYB83                                                --------->MYB52(1)                                               --------->MYB55(1)                                              <---------MYB55(2)                                              <---------MYB46(2)                                              <---------MYB111(1)                                              --------->AtMYB61                                             --------->ANAC46                                             --------->ANAC58                    --------->At4g35610      <---------ANAC55(2)              <--------HAHB4                 --------->ANAC58             <---------ATHB51                --------->ANAC55(2)             --------->ICU4       <---------MYB52(1)            <---------MYB52(1)   --------->At4g35610          ----------->GT1        <---------At4g35610       ---------->DOF2 --------->AHL20(2)        --------->MYB52(1)       <-------GAMYB<---------MYB59  <------ZmHOX2a(1)  <---------MYB59   <---------At4g35610      --------->ANAC55(1)        ----------->GT1 ----------GT1<---------ICU4 <-----------HVH21<---------MYB52(2)     --------->ANAC55(2)   tttaccaaaataccgataattaagctcaaaatgtcagttaacttaacacctaacgataaccaaaaggattcaagtgataaattcgatattcgagacttca  17466200                                                     --------->MYB52(1)                                                  <---------ANAC55(2)                                                  --------->ANAC55(2)                                          ----------->GT1         <---------TOE2(3)     <---------ARR14(2)                                       ------>MYB46(1)            <---------YAB1  --------->CCA1(2)                                       ------>MYB83  <-----------GT1             --------->ARR11(3)                                      --------->MYB52(1)       <---------YAB1    <---------ARR11(3)                                     --------->TOE1(2)       --------->ATHB12--------->LBD16                                     --------->TOE2(2)      <---------YAB1====================HOX2a_HOX2a                   ---------->DOF2  --------->MYB46(3)      --------->ICU4------>ZmHOX2a(2)                  ------>ZmHOX2a(1) <---------MYB52(2)  ------->GAMYB --------->WRKY12 <------ZmHOX2a(1)   attcaatcttcttcttagtcctaaagtacaaaatcgaaaccaacgagaaaataagtaacagcatgattatcgttgatcccagagatataggattcagtca  17466300                                                                                                    -                                                                                               ------                                                                                               ------                                          <-------MYC3                                 <---------ARR14(2)                                          ------->MYC3                                 --------->ARR14(2)             <---------HSFB2a(2)       <---------ANAC58                        <------ZmHOX2a(1)  ---             --------->HSFB2a(2)       <---------ANAC58                <------ZmHOX2a(1)       ------    --------->MYB46(3)                 <---------AtLEC2        <------ZmHOX2a(1)  ---------->DOF2<---   gagtcaaacaccattcgcgaaaacataaaaatcgagtctttgcatgtgaatataaacagagagaaggagagaaggagagaaggagaaaggaacctgtagg  17466400                                                                          --------->GLK1(2)                                                                          <---------ARR14(2)                                                                        <---------GLK1(1)                                                                    <---------HSFB2a(2)                                                                    --------->HSFB2a(2)                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                  --------->CCA1(2)                                                                 <---------ARR14(3)                                                                 <---------ARR11(3)          ----------->HVH21                                      --------->ARR14(3)        --------->At4g35610                                      <---------AGP1        --------->ZAT2                                           --------->ARR14(2)        <---------At4g35610                                    ----------->ARR10 --------->GLK1(1)       <---------TOE2(2)                                      --------------->AGL15       <---------TOE1(2)                                     <---------LBD16  --------->LBD16      <-----------RAV1(2)                                    ----------------->AGL2  <-----------HVH21                                          ----------------->AGL1 ------->GAMYB                                    <---------ZAT2 --------->AGP1  <---------GLK1(1) -------->MYB46(3)              <---------ANAC58  --------->ZAT2<---------CCA1(2)<---------ATERF1(1) --->ANAC58                     --------------------->WRI1   <-----------------AGL1 --->ANAC58                     <---------ANAC58  <---------ZAT14--------->ARR11(3) ------>MYB52(1)   --------->ANAC58           --------->ANAC46<---------------AGL15 --->ANAC46 ---------->DOF2     <---------ANAC46  --------->ZAT14<---------ARR14(2)          -------- ------WRKY38(1)   --------->ANAC58          <---------LBD16 --------->LBD16<---------LBD16  <-------   caacggtcgcaggtgaaaggcaagaaatcgatttgcttgcaaacatcgacggagcagtgtttccccagatctggaaattccggagtccccattcgaattc  17466500                                                                                    <---------At4g35610                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                 --------->LBD16                       --------->GLK1(2)                             --------->ARR14(2)                       <---------ARR14(2) --------->ZAT2                             <---------ARR14(2)            ---------->DOF2 <---------At4g35610         <---------ETT(1)   <---------CCA1(2)       --------->ANAC58  --------->ARR14(2) <XXXXXXXXXXX ->ARR14(2)           ----------->GT1   <---------------------WRI1    <---------GLK1(2)  <---------At4g35610 --ARR14(2)  --------->AtMYB61 <---------LBD16      --------->ANAC58 <------ZmHOX2a(1)   --------->At4g35610   gaacaacaattccgaccaaaaatagggtttatatccggcgagagagagaaactcaaggaaaaaaagaaataggattctgcagatttagatgagctgaaat  17466600                 <----------DOF2            ---------->DOF2          ----------->HVH21         --------->At5g28300         --------->LBD16                                                                            <        <---------ANAC46                                                                        -----   <---------At4g35610                                     <---------GLK1(2)                ---------   --------->At4g35610                        --------->GLK1(1)            <----------DOF2  <-------- XXXXXXXXXMIR779.1                            *TSS <<<<<<<<<TBF1     <----------DOF2       ----------   atcgcagaagccgtgaaagctttcaaatatgtgggaaatgtcaaactgatttcttcttctatattctcagtctttctcttttgtctatgttagaacaatc  17466700                                                                                         --------->KAN4(2)                                                                                        --------->KAN4(1)                                                                                        <---------KAN4(1)                                                                                        <---------HSFB2a(1)                                                                                        --------->HSFC1(2)                                                                                        <---------HSFC1(2)        --------->DAG2                                                         <-----------HVH21 --------->YAB1                                                           --------->ARR14(2) --------->AHL20(2)                                 <-----------GT1       <---------GLK1(2) ---------ATHB12                                 <----------DOF2     --------->GLK1(2)  --------->HSFB2a(1) ------->CBF      <----------DOF2             --------->GLK1(2)     --------->YAB1     <---------TOE1(2) >KAN4(1)  ------------>CBF            <---------LBD16 <----------DOF2 --------->YAB1  <---------KAN4(2) -KAN4(1)----------->GT1 --------->ATHB12 <------ZmHOX2a(1) <----------DOF2--------->GLK1(2)     ---- -->CBF---------->DOF2  <---------ATHB12 --------->LBD16 <-----------GT1  <---------ARR14(2)  <------   caattaaaaaaaagtcaatactttgaatcattcggaaattttcaggaaattctttaactttactttccaagaatcagaacctgtcatcgaatgttcttca  17466800                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                              ------>NtERF2       <-------TEIL                                   ------>MYB46(1)                        --------    <---------MYB46(3)                                ------>MYB83                    <---------YAB1   <---------------AtSPL3                    --------->YAB1                          <---------AHL20(2) ----->ZAT6                       ---------->DOF2   <---------MYB59                  --------->AHL20(2) ---REM1(2)          ----------->GT1        <---------YAB1     <---------ZAT6       --------->AHL20(2)   cagtaatggttcgtctattgaacatgttatatcaaacaaagtctatatcataaaccaaacttgtagaggtagaatattgatgaaaattaaaattggcacc  17466900                                                            --------->YAB1                                                      --------->ANAC46                                                      --------->ANAC58                                                      --------->ANAC58                                                <------ZmHOX2a(2)                                               <---------ARR14(2)                                 ---     <-----------GT1                           --------->ARR14(2)                                 --- -----ALFIN1               --------->ANAC58    <---------ARR11(3)                                 <-- --->MYB46(3)      ---------->DOF2    <<<<<<<ZML2<-------TEIL   --------->DAG2                ------- -NtERF2<----------DOF2    --------->ANAC58    --------->AGP1  ---------->DOF2    --------->At4g35610 ->PCF2 <---------DAG2   ---------->DOF2       --------->ARR11(3)               <------ZmHOX2a(1) <--   actggattaacttttctcaacaaaagtaaaagcaaaactagaacattaagatccataagcaaaaataaagtagtttggaagaggagatgaaaacagaagg  17467000       --------->ANAC46       --------->ANAC58       --------->ANAC58                 --------->AHL20(2) ------>ZAT14                     --------->YAB1                 ---------->DOF2 ------>ZAT18                     ------->GAMYB   <---------TOE2(3)                               <-- -----TEIL                        --------->TOE2(3)    --------->YAB1                             <-- -->DAG2  ----------->RAV1(1)    --------->MYB46(3) <------ZmHOX2a(1)                          <----- -------ZAT18                <-------TEIL<-----------GT1 <---------YAB1       --------->ALFIN1 <-----   tgcacaatccagcaacatatactaccaaaggttcaaccaaaattaactcatgaaggattataatccaaaaagaacacaaggtggaagcattgtttaggct  17467100  Previous    Next  AGI:  At2g41835.1    Description:  zinc finger (C2H2 type, AN1-like) family protein. Identical to Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 (SAP11) [Arabidopsis Thaliana] (GB:Q8VZ42); similar to zinc finger (C2H2 type, AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT3G57480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23571.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058) Range:  from: 17464864    to: 17466646    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g41840.1    Description:  40S ribosomal protein S2 (RPS2C). Identical to 40S ribosomal protein S2-3 (RPS2C) [Arabidopsis Thaliana] (GB:P49688;GB:O22936); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to unknown [Populus trichocarpa] (GB:ABK94437.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23572.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79008.1); contains InterPro domain Ribosomal protein S5, eukaryotic/archae Range:  from: 17466866    to: 17468617    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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