Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------GLK1(1)                                                                                --------->GLK1(1)                                                                              --------->YAB1                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                       <---------TOE2(3)                     <---------YAB1                                     ---------->DOF2                        --------->SPL7                                 <---------------AGL15                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                 --------------->AGL15                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                ----------------->AGL3                    <---------SPL7                                <-----------------AGL1                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <-----------------AGL3                   <---------ANAC58          --                                --------------->AGL15                    <---------ANAC58          --                                <---------------AGL15                    <---------ANAC46          xx                                ----------------->AGL2                  --------------->AtSPL3     <-                   <----------DOF2  <---------ATHB12<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <-              ---------->DOF2   ----------------->AGL1               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <----------DOF2        <--------- -----DOF2<----------DOF2      ----------------->AGL1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tccaaatgaaagcttttaaagctttgatgtctggcccaataaaggaaacatttacatccaaagtttctagctttgccgtatgatatccagatttaactga  17426100                                                           <---------ZAT14                --------->DAG2                             --------->ZAT14               ---------->DOF2   --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ANAC46            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    --------->ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58          xxxxxxxxxxxxxxxx>smallRNA(le3)          <---------ALFIN1     --------->HSFB2a(2)         <---------ARR14(2)------->TEIL     <---------HSFB2a(2)  ------->GAMYB         --------->ANAC58                                -----    <---------LBD16      <---------ATHB12       --------->ANAC46       <---------YAB1          ------   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         --------->ANAC58<---------ZAT14        --------->HSFB2a(2)  <-----------GT1       ------>MYB83         --------->WRKY12   <---------ZAT18        <---------HSFB2a(2) ------->ARR11(3)       --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ARR11(3) ------->AHL20(1)       ------>MYB46(1)<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(s)   --------->ICU4    <---------LBD16 --------ARR11(3)       -------->P   ------>ZmHOX2a(1)     --------->ZAT18 <---------ZAT6<xxxxxxxxxxx --------AHL20(1)       --------->ANAC58--------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->RAV1(2) --GT1    <----------DOF2--------->MYB46(3)  ----------->HVH21  --------->ZAT14  <---------ARR11(3)   atattttctggactttgtaaagtgccaaccaagagtatcctccgtagttgacgcacccaagtgcagagcacttattagtgaaacatcttctgggacaaaa  17426200                     <---------HSFC1(1)                     --------->HSFB2a(2)     <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         <     --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   <------    --------->AHL20(2)--------->LBD16                                                   <---------DAG2 ---->DAG2           --------->HSFC1(1)                              <------ZmHOX2a(2)  <----------DOF2 ---->DOF2    --------->WOX13(1)     <---------ZAT6     <----------DOF2   --------->MYB52(1)  <------ xxxxxsmallRNA(i)    <---------HSFB2a(2)    --------->YAB1     <---------AtLEC2     <---------MYB52(1)   agctcatttaataagtcaatcttccagaaatttgttcgagtgtcaataagactttgaacttttaggcatggatcaataactgagccattactttttgctg  17426300                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                ------>ZmHOX2a(1)                             ------>ZmHOX2a(1)                          --------->HSFB2a(1)                               =========================                         ------->TEIL                      ------>MYB46(1)  <----------DOF2                         <---------ARR14(2)                ------>MYB83     ------>ZmHOX2a(1)                         --------->ARR14(2)    <---------ATERF1(1)          ======================HOX2a_HOX2a  --------->HSFB2a(2) --------->ANAC58         ------>NtERF2          <---------AHL20(2) <---------ANAC46     --------->ANAC58        --------->ANAC58     --------->YAB1 <---------LBD16      --------->ANAC46        --------->ANAC58   --------->AHL20(2)             ----- ---------LBD16      --------->LBD16          --------->ANAC46 <----------DOF2             <------ZmHOX2a(2) ---ANAC58       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->DEAR3(2) --------->TOE2(3)   <----- ---ANAC58       --------->ARR14(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ICU4     --------->GLK1(1)   gtctcgggaattgagttggaatccacgaatcctcctaaactgaaatggacgccccaaaaccgactcttttaataaatcctttgttaaccagagatcgatc  17426400                                      <---------AHL20(2)                                     --------->AHL20(2)                    ------>MYB83                                     <---------AHL20(1)                    ------>MYB46(1)                                     <---------AHL20(2)                  --------->MYB46(3)                                     --------->AHL20(1)                  <---------MYB59                                 <---------AHL20(2)                      --------->DEAR3(1)                                 --------->AHL20(2)         <---------GLK1(1)    ---------->DOF2    -                                 <---------YAB1  --------->MYB52(1)  <---------SPL7  <---------ARR11(3)                                <---------AHL20(1)         <---------GLK1(2)  <----------DOF2       - =HOX2a_HOX2a                   --------->AHL20(1)    --------->ARR14(2) <---------MYB46(2)   ------- ---->YAB1                      --------->AHL20(2)    <---------ARR14(2)--------->DEAR3(2)    ------- -ZmHOX2a(2)             ----------->GT1       --------->MYB46(3) <---------MYB52(1) --------->ARR11(3)   agaaacaatacttcttcatccataagatggagaatataatttaatattatccaacggattggattttcggtagtaccgacctttaaagaccttcgcaaac  17426500                                         <---------AHL20(2)                                         --------->AHL20(2)                                         <---------ARR11(3)                                      --------->AHL20(2)                                     <---------AHL20(2)            --------->AHL20(1)                                     --------->AHL20(2)            <---------AHL20(1)                  <---------------AGL15  <---------AHL20(1)        --------->AHL20(2)                 ======================================================================MADS_MADS                 <-----------------AGL3  --------->ARR11(3)        <---------AHL20(2)         <---------AHL20(2)      <---------YAB1------------>CBF   --------->YAB1                 <---         --------->AHL20(2)      <---------AHL20(2) --------->ARR11(3)                         ------ *TSS   --------->AHL20(2)       --------->AHL20(2) --------->AHL20(1)        ----------->GT1  <----- -------->YAB1  <<<<<<<<<GATA-1 --------->AHL20(2)  <---------AHL20(1)    <-------TEIL         <----- -------->AHL20(2)--------------->AGL15  --------->AHL20(1)   <---------AHL20(2)              ------- -->ANAC58     <-----------GT1  <---------AHL20(2)  <---------ARR11(3) <---------------AGL15  <------ -->ANAC58   <---------AHL20(2)--------->YAB1<-----------GT1  --------->AHL20(2)   --------->AHL20(2)   aataaaaaaaaaaaatttatctatttttagctattttaattaatatattaccaatattttggattttaatataatatacatggaaaaaaataggtcatca  17426600                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                <---------AHL20(2) ------------>CBF                            ------->TEIL       --------->AHL20(2) ------YAB1                           <---------AHL20(1)      <---------AHL20(2) --->YAB1                             --------->AHL20(1)      --------->AHL20(2) ----ICU4   <---------O2              --------->ARR11(3)    --------->AHL20(2) ---HAHB4   --------->O2            --------->AHL20(1)      <---------AHL20(2)            --------->ATHB12 -->ICU4   <---------HSFC1(2)       <---------AHL20(1)    --------->AHL20(2)              <---------AHL20(2) ---YAB1   --------->HSFC1(2)      --------->AHL20(2)     <---------AHL20(2)         <-------TEIL   ttatacaattggaaacgtcgctaatttttgtcttgaaatatatattgcatctaaacttatatatatatatatatatatatacttacatacatttattgga  17426700                      ------>MYB83                      ------>MYB46(1)                      -------->P                     --------->MYB55(1)                    <---------MYB46(2)                    <---------MYB59                    --------->MYB46(3)                    <---------MYB111(1)                    <---------MYB111(2)                    --------->AtMYB61                  -------->P       <---------------AGL15                                                                       --       --------->TOE2(3)                                                              ----------->GT1       --------------->AGL15                                                          <------MYB83 <-      <-----------------AGL3                                                          <------MYB46(1)      ----------------->AGL2                  --------->TOE1(3)                     --------->CCA1(2)      ===============================================================================================      ----------------->AGL3                  --------->TOE2(3)                ---------->DOF2    <--  <---------REM1(1)--------->MYB46(3)        <---------ICU4                 --------->ANAC58    <---- --------------->AtSPL8                  <---------AHL20(2)                 --------->ANAC58  ------- <---------------AtSPL8         ----------->GT1        --------->AHL20(2) <---------AtLEC2   <-------   tttgttgtaccataaatagctaccaacctagacctagttatatataaacattaacaaaaaaatgatgcaaatatttgcaagaaaagataggtgaaatcat  17426800                                                            <---------AHL20(2)                                                     --------->ZAT6                                               <----------DOF2                                              ------>ZmHOX2a(2)                                             <---------RVE1(1) --------->ATHB12                            <------ZmHOX2a(2) ------------->AGL15    <---------REM1(1)   <---------ARR14(3) --------------AGL15  <------MYB46(1)       --------->ARR14(3) ==============MADS_MADS--------->ALFIN1    --------->ARR11(3) ---------------AG    <------MYB83          <---------ARR11(3)                                    <-- -----YAB1     --------->TOE2(2)            --------->AGP1  --------->AHL20(2)            ----------- -->YAB1    <-----------GT1                 <---------ARR14(2)                    <---------YAB1 <--- --ATHB12--------->CCA1(2)                  --------->ARR14(2)                 <-------TEIL      ----   acttgatttggatataacctatgtaggtgtagaatagaccgtataagatcttttaacacaaattaaaaaaaactatccaaattcattatacatagttaat  17426900                                         --------->ATHB12                                         <---------AHL20(2)                                         --------->ATHB51                                         --------->AHL20(2)                                        --------->AHL20(2)                                        <---------AHL20(2)                                        <---------AHL20(1)          --------->ATHB12                                     --------->AHL20(1)             <---------ICU4 -------YAB1                         <---------AHL20(2)            <---------YAB1                 --- >GT1      ----------->GT1    <---------LBD16<---------AHL20(2)    <---------ATHB12  ----------->HVH21 ------ARR11(3)       ---------->DOF2<---------AHL20(1)     <------MYB83           <---------AtLEC2 ----->ARR11(3)  ---------->DOF2     --------->AHL20(2)     <------MYB46(1)        <---------ICU4 <--   atcatatagaatgttgtaaaaaagaaaagtatttcggaataaattatttgatttggagagattggtctcatcattcgctatttcagcatgacacgatgtc  17427000  Previous    Next  AGI:  At2g41745.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, blastp match of 28% identity and 4.7e-24 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 17425032    to: 17426501    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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