Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <------ZmHOX2a(1)                 ---                              <------ZmHOX2a(1)                ----------->GT1                   ----                            --------->LBD16                 --------->At4g35610              --------                           <---------HSFB2a(2)              <---------ZAT2                   --------                           --------->HSFB2a(2)              --------->ZAT2           --------->LBD16                           <---------LBD16         --------->At4g35610         <----------DOF2  -----                       --------->GLK1(1)           <---------At4g35610<---------GLK1(2) ---------->DOF2                <----------DOF2             <---------YAB1<-----------RAV1(2)  <---------DAG2--------   aattagaaaaactcaaaactttgcgatttccaggaattgatcaaatgtgattcagaagacccagcaggaaaaaattctcgacttttccgaaaaagacgca  17424400     <---------HSFB2a(2)     --------->HSFB2a(2)   <------ZmHOX2a(2)  --------->AGP1  <---------ARR14(2)        <---------YAB1            <------ZmHOX2a(2)  --------->ARR14(2)     <------ZmHOX2a(2)       ------->GAMYB -------------->AGL1    <---------ARR11(3)      --------->MYB46(3) -->NtERF2              --------->ARR11(3)     -------->P                  ------>ZmHOX2a(2) ->ANAC46         <-------TEIL               --------->MYB46(3)      --------->At4g35610 ->ANAC58       <---------GLK1(2)        <---------MYB52(2)          <---------At4g35610 ---->RAP2.3(3) --------->ARR14(2)      --------->ANAC58        --------->GLK1(1) ->ANAC58       <---------ARR14(2)      --------->ANAC58        <---------GLK1(1)                   <   gccagatcgagaaactcagattcacagatcatgaaacagagcaaggaacaaccacgatcaaatcggaaatcagatgatccatacatttagtcaaaatcga  17424500                                       --------->ALFIN1                                     <---------ANAC58                                     <---------ANAC58                              --------->ARR11(3)                              <---------AGP1                              <---------ARR14(2)                              <-----------ARR10                              <---------ARR11(3)                              --------->ARR14(2)                              --------->ARR14(3)                            ----------->ARR10                         --------->ANAC58                         --------->ANAC58               --------->ANAC58     <---------MYB46(3)               --------->ANAC58<------ZmHOX2a(2)          <---------------AtSPL3    --------->MYB55(2)                        ---------->DOF2          <---------------AtSPL8 <----------DOF2                       --------->ARR11(3)          --------------->AtSPL3------>ZmHOX2a(2)                      <---------ARR14(2)      ---------->DOF2    --------->ANAC46<------NtERF2                 --------->ARR14(2) ---------TOE2(3) ------->TEIL<---------ARR14(3)     <----------ID1 >>>>>>>>>TBF1             -------   tcgaggtagaaagaagtacgaacctgcacgaagatctttgggtggcactaagaaaacgacgaaagatgaagaagaactggcaaagaagacgagggaagat  17424600                               <---------ICU4                               <--------ATHB1                                                      --                              <---------AHL20(2)                                                   <-                              <---------ATHB51    --------->ZAT2                                   <-          ----------->GT1 --------->AHL20(2)      --------->At4g35610                              <-    >>>>>>>>>TBF1  ----------->GT1                <---------At4g35610                              -- ------------------------>ANAC81     ---------->DOF2          <-----------GT1   <----------DOF2 <---- >>>>>>>>>TBF1   --------->DAG2--------->ATHB51   <---------ZAT2           <----------DOF2<---------DAG2 -->At4g35610   ---------->DOF2--------->ATHB12 --------->ZAT18       ---------->DOF2     <----------DOF2   gaagaagaagaagagaaaaaaagctaaattgaataattgaaaagaggttgtgagctgtgttttttttctctctaaagcttttctttttaatgctttttct  17424700 ------->YAB1               <-----------GT1 --------ANAC58            <---------YAB1 --------ANAC55(2)      --------->AHL20(2) --------ANAC58  --------->TOE1(3)                                   ----------->HVH21 ------->ANAC55(2)------>ZmHOX2a(1)                                 --------->SPL7                 -- ------DOF2      --------->TOE2(3)                          <---------At5g28300                   <--   ttcgtaacgttttttgtttccttagatttattacagtagagagagagagagagagattgaattactgccagacgacgaggtcgaagacgaagaatataga  17424800                                                                             <---------YAB1                                                                      ===========================HOX2a_HOX2a                                                                      ------>ZmHOX2a(2)                                                                     ============================HOX2a_HOX2a                                                                     --------->CCA1(2)                                                                     <------ZmHOX2a(2)                                                                     --------->ARR14(1)                                                                    --------->ARR11(3)                                                                    <---------ARR14(2)                                                                    --------->AGP1                  <                                                                    --------->ARR11(1)             --                                                                  --------->MYB59                  --                                                                  ----------->ARR10             -----                                                            --------->AHL20(2)   ------------>CBF----       ---------->DOF2                                    ----------->GT1<---------MYB52(1)   ------>NtERF2   <----------ID1            ---------->DOF2         <----------ID1 --------->ARR14(2)    ------>ZmHOX2a(1) ------->ALFIN1    ---------->DOF2   --------->GLK1(2)    --------->ANAC58 <---------ANAC58  <------- ----ZmHOX2a(1)   *TSS  ----------->GT1   ------------>CBF--------->ANAC58 <---------ANAC58  --------   ggagggagacaaagttttgagaaaagacgtttaaagaagagtctgtcaatttttaaggccaagtaaattagatccggtcgtgattcaatttcctcccgac  17424900 ---------ATHB12                                                                        <-----------GT1 ---->MYB83                              <---------AHL20(2)                  --------->ANAC55(2)   -- ---->MYB46(1)    <----------DOF2     <----------DOF2                   <---------AHL20(2)         -- ------->CBF<----------DOF2        <---------ALFIN1                    --------->AHL20(2)         <-- ----->AtMYB61  ---------->ID1<-----------GT1                          <---------AHL20(2)      <----- --ETT(1)  <---------DAG2   <----------DOF2               --------->TOE2(3)  <---------ANAC55(2)  <-- ->LBD16<-----------GT1 <----------DOF2  --------->AHL20(2)            --------->AHL20(1)      ------   caatcttgttttgcctttttctttttctttctttaccacacttttaattccaaaaatccacattaatcccaaatttaatacatattgttttttcgaaatt  17425000                                                                                                   <x                                                                                                 ----                                                                                                xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              <xxxxxx                 --------->AHL20(1)                                                           xxxxxxx                 --------->ARR11(3)                                                          xxxxxxxx                 <---------ARR11(3)                          ---------->DOF2                xxxxxxxxx        ----------->GT1                                    ---------->DOF2                 <xxxxxxxxx    --------->ICU4  <---------AHL20(2)                <---------At4g35610                  xxxxxxxxxx --------->GT1   <---------AHL20(1)           --------->AHL20(2)                     xxxxxxxxxxxxxxxx ------->YAB1  --------->ARR11(3)             --------->AHL20(1)                     xxxxxxxxxxxxxxxx -------YAB1   <---------AHL20(1)             <---------AHL20(2)        ------>ZmHOX2a(1)  xxxxxxxxxx ----ATHB51    --------->AHL20(1)            --------->AHL20(2)         --------->LBD16   xxxxxxxxxxx -------TOE2(3)<---------ARR11(3)     --------->AtLEC2--------->At4g35610       xxxxxxxxxxxxxxxxxxxxx --->ICU4--------->At5g28300          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   atggtaataactgtaaaaatattttttttttttttttgtcatccaaaattaattagagctcaaaagagccattcctgaagaattttgtttacataagtga  17425100                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           >>>>>>>>>E2Fd             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          ------>NtERF2              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------DAG2                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              --------->ANAC58                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <------MYB46(1) --------->ANAC46          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <------MYB83    --------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <--------P <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ZAT6      <xxxxxxxxxxxxxxxxsmallRNA(i)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <-------GAMYB<----------DOF2              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------MYB46(3)  --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------RAP2.6(2)--------->ANAC46     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i) ----->CCA1(2)--------->ANAC58       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-----------GT1 --------->ZAT18 xxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)     ---------->DOF2 xxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxx>smallRNA(se3)>>>>>>>>>E2Fc  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(i)    --------->AHL20(2)              <xxxx xxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)      <---------AHL20(2)              <xxxx xxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              <xxxx xxxxxxx>smallRNA(si3) <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxx xxxxxxx>smallRNA(le3) <---------ANAC58 <----------DOF2  --------->HSFB2a(2)                  <------ xxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s) <---------HSFB2a(2)                  <------ xxxxxxxxxxxx>smallRNA(se3)<------NtERF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1xxxx xx>smallRNA(i2) ------->TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------TOE2(3)         <--------   tatgatgcggttggacacgaactttacgcgccaaattatccgctttgacatttgcactacgagaaattaaagataaaaaaaaacttgaaaattttttctt  17425200                                                                                                    <                                                                                                   <x                                                                                                 <xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                <----                                                                                                -----                                                                                                <xxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           ------>ZmHOX2a(2)      xxxxxxx                  --------->ARR14(2)                                  <------ZmHOX2a(2)       <xxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------HSFB2a(2)    --------->CCA1(2)       <xxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------MYB46(1)        <---------ARR14(2)       xxxxxxx         --------->ARR14(2)                   <------MYB83  <---------ICU4 <xxxxxxxxxxxxxxxxsmallRNA(i)         <---------ARR14(2) ---------->DOF2  <---------MYB46(3)      <---------ARR11(3)       xxxxxxx <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ALFIN1        --------->ARR14(2)      xxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------MYB52(1)  <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <--------P xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(se3)       <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->WRKY18(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  xxxxxxxx ---ANAC58        <---------ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AGP1  <xxxxxxxxxxxxxxx ---ANAC58   ------>ZmHOX2a(1)     <---------MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <-----------HVH21<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxx ---GT1 xxxxxxxxxxxxxxxxxx>smallRNA(se3)   <-------GAMYB<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------   gtcactctgcaattcctccaaatacactgagaaagccggtcattcggttggggaagacatcatcttcaccagatccgaacagtctgtgagaaacacaaca  17425300  Previous    Next  AGI:  At2g41740.1    Description:  VLN2 (VILLIN 2); actin binding. Identical to Villin-2 (VLN2) [Arabidopsis Thaliana] (GB:O81644;GB:O22946;GB:Q8RXZ3); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3), actin binding [Arabidopsis thaliana] (TAIR:AT3G57410.1); similar to VLN4 (ARABIDOPSIS THALIANA VILLIN 4), actin binding [Arabidopsis thaliana] (TAIR:AT4G30160.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23602.1); similar to actin bundling protein ABP135 [Lilium longiflorum] (GB:AAD54660.1); contains InterPro domain Range:  from: 17417793    to: 17424818    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g41745.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, blastp match of 28% identity and 4.7e-24 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 17425032    to: 17426501    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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