Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->At4g35610             --------->ZAT2             <---------At4g35610<---------ARR11(3)             <---------ZAT2   --------->ANAC58 ------->bZIP60(2)            --------->ANAC58                                          --------->ICU4 -----TEIL---------->DOF2     --------->ANAC46                                      --------->At5g28300 --->At4g35610        <---------ATHB12   <---------GLK1(2)         --------->YAB1  ----------->GT1<--   tacgtcccatttgaaagctgagcaatgaattcaagacatttcaaattcttgttcgcatacaaaacacaataacaagtgaatgagacggtaaaaatgagat  17361800                                       <-----------RAV1(2)                                      ------>ZmHOX2a(1)                            --------->HSFC1(2)                            <---------HSFC1(2)                            <---------HSFB2a(1)                            --------->ZAT2          --------->At4g35610  <-------TEIL                        <---------DOF5.7(2)        -------          <------NtERF2     --------->At4g35610                  --------->DOF5.7(2)          <------     <---------ZAT6         --------->HSFB2a(1)                 --------->HSFB2a(2)------>ZmHOX2a(2) ---------GT1             <------ZmHOX2a(1)             <---------At4g35610  <---------At4g35610  ---   taacctagtggcagcaatagactgagaaggagcttcgttcctcagggttttagccttgagcttcttcgataacgcttccaactgatctaaatttctctga  17361900                                                                     ----------->RAV1(2)                                                                    --------->GLK1(2)                                                                   --------->ARR11(3)                                                                   --------->ARR14(2)                                                         ---------->DOF2                                                     <---------LBD16------->TEIL                                           --------->TOE2(3)       <---------ARR14(2)                             --------->YAB1--------->TOE1(3)   <------ZmHOX2a(1)                  <-- ---->HVH21                  --------->TOE2(3)       --------->At4g35610          <---------ARR14(2) ---YAB1                     --------->TOE1(3)      --------->MYB52(1)           <------ZmHOX2a(1)--- -------->GT1    --------->WOX13(1)      ------->TEIL<---------At4g35610      <------ZmHOX2a(1) <----   tagtgaaacagacaaaaatcaatcgaactaatcttaaacgatgaacctcaaaaccagcggaaagaggaagaacctgaagaggaggaaactgagaagaagg  17362000              --------->HSFB2a(1)              --------->HSFC1(2)              <---------HSFB2a(1)            <---------GLK1(2)         <---------HSFB2a(2)                      <---------ATHB12         <-----------RAV1(2)                   --------->AtMYB61         --------->HSFB2a(2)                  <---------ATHB12  <---------ANAC58                            <---------MYB55(2)  <---------ANAC58                            --------->MYB46(3) <---------At4g35610                         ------>MYB83 --------->At4g35610                         ------>MYB46(1)      --------->ANAC58 <---------ZAT2                              -------->P           --------->ANAC58               ---- --------->ZAT2                      <------ZmHOX2a(2)           --------->SPL7                  ---- -------At4g35610                   --------->ARR11(3)         <---------SPL7                    ---- ------>At4g35610                   <---------ARR11(3)        <---------MYB46(3) --------->ARR14(2) --ZmHOX2a(1) <---------HSFC1(2)  ----------->ARR10  <---------CCA1(2)           <---------ARR14(2)   agcagcttgctccagaagcttcgacgaagaatggagaagatcagtccaaccactcatctcttggtcgttcgccattgattttggattcgagctactacta  17362100          --------->At4g35610          <---------At4g35610     <------NtERF2           <---------ANAC58    <---------LBD16          <---------ANAC58         <---------AHL20(2)  --------->ALFIN1        <---------ARR14(2)         --------->AHL20(2) <-----------HVH21       <---------GLK1(1)   <----------DOF2     <---------TOE2(3) ----->ANAC58            --------->GLK1(1)  --------->TOE2(3) *TSS          <----------DOF2   <------ ----->ANAC46  ---------->DOF2 <---------MYB52(1)    <---------AHL20(2)    <---------DAG2  <--------- ----->ANAC58--------->At4g35610  <------NtERF2     <---------WOX13(1)  <-----------GT1  --------->YAB1   cgcagtcggggaagcagcaaagagagggtttccgtcgggattcaaacctttttgatttattttgttttatgttattaccttttacgactaattatacttt  17362200                    --------->AHL20(2)                  <----------DOF2      <---------AHL20(1)                                                                <----------ID1      --------->ARR11(3)                                                             <---------ATHB12      <---------AHL20(2)                          --------------->AGL15          --------->MYB46(3)--     <-----------TBP<---------AHL20(2)          <---------At5g28300             --------->ANAC58<---- ----DOF2   <---------GLK1(2)      --------->AHL20(2)   <-----------GT1         --------->ANAC58----- --GT1--------->AHL20(1)       ----------->GT1 <-----------GT1       <---------TOE2(3)--------->YAB1   tctgttaatatatagaatttctttaaattcgataagaaaaaatagctatttactgtatttagcccatttttaagaattagacaaccaatgaagacaaatt  17362300                                                                                   --------->ARR14(2) --------->ANAC58                                                                  <---------ARR14(2) --------->ANAC58                                                               <---------ANAC46 -------->DOF2                                                              <----------DOF2 -----AHL20(2)                --------->YAB1      <----------DOF2      <-----------GT1 ---->AHL20(2)    ----------->GT1       ---------->ID1<---------AtLEC2<-----------GT1   aaaaagccatcaaaaatgctctgtaaatccaaacatatttttgtctcattttcttttcatgaacaaagtttttttccgctttgcgaatattgtatggggg  17362400             <---------ICU4            --------->AHL20(2)         --------->YAB1                                      <------ZmHOX2a(1)            <---------AHL20(2)         --------->AHL20(2)                       --------->YAB1            --------->ICU4          --------->YAB1                           <---------GLK1(2)       <---------YAB1              <---------ATHB51              --------->ANAC46      ---------->DOF2   --------->ARR11(3)         --------->YAB1                     --------->ANAC58   --------->ANAC58 <---------YAB1 <-----------GT1  --------->YAB1<----------DOF2   --------->ANAC58   --------->ANAC58 <---------TOE2(3)        <---------YAB1   <-----------GT1     <-----------GT1--------->GLK1(2)     -   aataagattatgaaaaaattaccatcttactataacaataataatattcctttcttcaagttttttaacgccattacaagaatcttaagcaaaggacttc  17362500                                                               ------>ZmHOX2a(1)                                                              --------->TOE2(3)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                    ---------->DOF2                     ------->TEIL           ---------->DOF2                             <---------CCA1(2)     --------->CCA1(2)                             <----------DOF2    --------->ARR11(1)                             --------------------->WRI1    <---------ARR11(3)--------->DAG2              <---------ANAC58                   --------->CCA1(2) --------->DOF2<----------ID1                     <---------ANAC58                  --------->ARR11(3)   aaaaaagatttgaaaaagaaacaaaaggctctactagagagagagaacaattgctttgtatcttcctcagtcgatatagatttatagatatagatagttc  17362600                                                                   <---------ANAC58                                                               <----------DOF2                                                         ------>ZmHOX2a(1)                                                      <------ZmHOX2a(2)                                                     <---------ARR14(2)                                                     <---------ARR11(3)                                                     --------->AGP1<---------ANAC58                                                     --------->ARR14(2)                                  ===========================HOX2a_HOX2a                                  ============================HOX2a_HOX2a                          --                      --------->MYB52(1)             --------->ARR11(3)                       <------                   --------->ANAC58                  <---------GLK1(2)    -------->P          -------                   --------->ANAC58   ----------->HVH21------>ZmHOX2a(2)  ------>MYB83 <----------DOF2               --------->GLK1(2)  <------ZmHOX2a(1) <---------At4g35610   ------>MYB46(1)----------->HVH21   tctattgcatatagaagaatcaagaaacgacttcaaggacttgacaggtttttcagatcctcttcctttgcataccaacttggtgctatctttgacagat  17362700  Previous    Next  AGI:  At2g41620.1    Description:  nucleoporin interacting component family protein. Identical to Uncharacterized protein At2g41620 [Arabidopsis Thaliana] (GB:O22224;GB:Q94CF2); similar to nucleoporin interacting component-related [Arabidopsis thaliana] (TAIR:AT3G57350.1); similar to Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] (GB:ABD28395.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23623.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74373.1); contains InterPro domain Nucleoporin interacting component; (InterPro:IPR007231) Range:  from: 17354382    to: 17362162    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g41630.1    Description:  TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor. Identical to Transcription initiation factor IIB-1 (TFIIB1) [Arabidopsis Thaliana] (GB:P48512); similar to transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) [Arabidopsis thaliana] (TAIR:AT3G10330.1); similar to Transcription initiation factor IIB (General transcription factor TFIIB) (GB:P48513); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Zinc finger, TFIIB-type; (InterPro:IPR013137); contains InterPro domain Cyclin- Range:  from: 17362409    to: 17364676    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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