Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->ANAC58                 <---------ANAC58  --------->ANAC58                                              ----                 <---------ANAC58--------->ANAC46                                                ---- --------->GLK1(1)             --------->ANAC46                       <---------DAG2             <--- <---------GLK1(1)      ------>ZmHOX2a(1)                             <----------DOF2            <--- -->DOF2 <---------ATHB12   --------->ZAT14               ---------->DOF2            ---------->DOF2   aagaattccaaatcagttctcgtgtcctagtatacacaagacaatgcattaaacaaataagaaagaggttagctttattctaaaactcaaagtatcaagt  17314100                            ------->GAMYB                           --------->ZAT6                         --------->MYB52(1)                         ------>MYB83                         ------>MYB46(1)                        --------->MYB55(1)                        ----------->HVH21                       <---------MYB52(2)                       <---------MYB111(2)                       <---------MYB46(2)                       <---------MYB59                       <---------MYB111(1)                      <---------ANAC55(2)                         --------->ARR14(2)                      --------->ANAC55(1)                    --------->DAG2                      --------->ANAC46                 --------------->AGL15                      --------->ANAC55(2)             <---------At4g35610 ----->ZAT18          --------->ANAC58                --------->bZIP60(2)                     ------- ----->ZAT14          --------->ANAC58              <-----------GT1                        --------->ANAC58 ------ZAT18--------->AHL20(2)  ---------->DOF2 ------>ZmHOX2a(1) <---------ARR14(2)       --------->ANAC58 ------ZAT14<---------AHL20(2) <---------WRKY38(1)<-----------HVH21                   ---------->DOF2   gctctcttgggaatttaaacaaacacctaacagtcaaagtatcaagcttcctagtcacctcataaggggatactagagcatactcagtgaaagaagcaaa  17314200                                                                        <---------ARR11(1)                                                                        <---------ARR14(2)                                                                        --------->GLK1(2)                                                                        --------->ARR14(2)                                                                        ------->TEIL                                                                        <-----------ARR10                                                                       <---------CCA1(2)                                                     <------ZmHOX2a(1) <---------ARR14(1)                                                   --------->ANAC46 --------->LBD16                                          <---------TOE2(2)        --------->ANAC46                                          <---------TOE1(2)       --------->TOE1(2)                                         <---------MYB52(1)       --------->TOE2(2)                                       ----------->GT1      --------->ANAC46                ---------                                       ------>ZmHOX2a(2)   <---------TOE2(3)  <---------MYB52(1)                                       =====================HOX2a_HOX2a<---------GLK1(2)    --------- --->DOF2        ----------->GT1--------->TOE1(2) <---------LBD16 <---------LBD16         ---------->DOF2   gaaaatcaacaggtttcagtagaaaaaaatcgaaactgggatcgtaagtttaccaggaattgacgaaacccgcgaatctcgttactctcttcgaaagccc  17314300                                 --------->LBD16                       ------->GAMYB                                <---------ANAC58                     -------->P                            --------->ZAT2                          ------->GAMYB   --------->ANAC55(1)      <---------ZAT2                         --------->MYB46(3)   <---------ANAC55(2)     --------->ANAC58                        <---------MYB55(2)   --------->ANAC55(2)     --------->ANAC58                        <---------MYB111(2)   --------->ANAC46<-------GAMYB<---------ANAC46               <---------ATHB12   --------->ANAC58<---------At4g35610                       ------>MYB83   --------->ANAC58--------->At4g35610   --------->LBD16     ------>MYB46(1) >ANAC58          --------->MYB52(2)     ------>ZmHOX2a(1) <---------MYB59                     <----- >ANAC58       <-----------HVH21<---------ANAC58           --------->TOE2(3)----------->GT1<---------   caaacacgaaacagtcttgtcagttgctcaagctccgtgtttcctgagaaaaaacccataacctaatcaacaacccaattgttaaaaatccatctttatg  17314400                                   <-------TEIL                             ----------->GT1                                <------MYB83                               --------->ANAC58                          ---------->DOF2                                  --------->ANAC58   ---------->DOF2       <------ZmHOX2a(1)                      <---------DEAR3(2) ----YAB1  --------->At4g35610  <---------MYB46(3)          ----------->HVH21 -DOF2    --------->GLK1(2)     <------MYB46(1)   ----------->HVH21      --------->MYB52(1) ---------   agaaacaaagagaagctaaatcagagaggaaagttggttcatacctctgagtctgaccagagacgacggtagcaaaaacggaaatttgatgcgagaaagc  17314500                                         <----------DOF2                                      ------>MYB46(1)                                    --------->DEAR3(1)                             ------>ZmHOX2a(1)                             <----------DOF2                    <---------AHL20(2)------>MYB83                                  <------------CBF<                <---------AHL20(2) --------->MYB46(3)                           <-------TEIL<--------    *TSS        --------->AHL20(2) --------->DEAR3(2)        <----------DOF2 <---------DEAR3(2)    -- ->DOF2        <---------AHL20(2)<-----------GT1       --------->MYB52(1)   <---------DEAR3(1)   ----   cgagagggtttttcttatttattttttagtcctttaaaccgacctttgacaaaaaaaaaacgactttgtgaaaacgggccggttcatattgggccttttt  17314600                                                                          --------->GLK1(2)                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                         --------->RVE1(1)                                                                         --------->CCA1(1)                                                                       --------->AHL20(2)                                                                  --------->TOE2(3)                                                                 --------->ANAC46                <---                              <---------ANAC46                   --------->ANAC55(2)            ----- ---------ICU4<---------AHL20(2)                                 ----------->GT1                ----- --DOF2<----------DOF2---------->DOF2           --------->ICU4   <---------ANAC46             ------- ------->ICU4--------->AHL20(2)  <---------ARR14(2)              <---------ANAC55(2)          ------- ----->YAB1  <---------AHL20(2)  --------->ARR14(2)<-------TEIL <---------TOE2(3)  --------->ZAT6----   cataatgggcttttattaattcgtaaaagtttgagtatatgaagcaggtcatgttcattttctgtttacgtaaaaaaatcttctaacacaattcaaccaa  17314700                                                      <---------MYB59                                                      --------->TOE2(3)                                                      --------->TOE1(3)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <----------DOF2                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   -------->ATHB1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->ATHB12         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   --------->ATHB51         <<<<<<<<<CBP60g                  --------->ICU4            <<<<<<<<<SARD1         <---------AHL20(2)                  <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <----                  --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <----                  <---------ATHB51        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 -----               --------->AHL20(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                    <----      --------->ANAC58                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    -----      --------->ANAC46                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    -----      --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->AHL20(2)           -----     <---------At5g28300              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <----- ------ARR14(2)--------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        --------->GLK1(2) ->MYB46(1)    <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ARR14(2) ->MYB83      --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------GLK1(2) >GAMYB--------->DEAR3(1)------->TEIL <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ARR14(2) -->AtMYB61   <---------ATHB12 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------AHL20(2)      <----- ----->ARR14(2)<---------AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->AHL20(2)      ------   atccattcacggcccaataaattattgaatcttgtggtatgctccaaatttctttacctaaaactctaaatatttaaaaaccagattctattttgcaatt  17314800                                                                      ---------->CDC5                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                    --------->ANAC46                                                                   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                 <---------ZAT18                                                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 --------->ZAT18                                                                 --------->ZAT14                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <---------ZAT18 <---------ALFIN1                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                              xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxx                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->ALFIN1                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ------>MYB83                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  ------>MYB46(1) ----HAHB4                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->AHL20(2)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->AtMYB61 -----ICU4                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ALFIN1 ---->ATHB12                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->At4g35610 ---->ATHB51                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --->ATHB1                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->At4g35610 ----ATHB51              ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->DEAR3(1) ----ATHB12            ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --->ICU4  <---------GLK1(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------At4g35610XXXXXXXXXX   atttgaaaatttggattctaaaatataaagaaaaaactgaataaagaagtaggacccgatgcactagcacactcagcacctcccaagagtcgggcctgat  17314900                                                                                       --------->ANAC58                                                                                       --------->ANAC55(1)                                                                               <---------ANAC58                                                                               --------->ANAC55(2)                                                                               <---------ANAC58               --------->ZAT14                                                 <---------ANAC55(2)            <------MYB83                                                      --------->SPL7            <------MYB46(1)                                                 <---------SPL7           --------->MYB59                                                 --------->TOE1(1)     <---------------AGL15                                            --------->ARR11(3)     --------------->AGL15                                            <---------ARR11(3)    <-----------------AG                                             --------->GLK1(1) --------->ANAC46    <-----------------AGL1                                     ---------->DOF2<---------TOE1(2)    --------->ANAC46                                        --------->YAB1 --------->TOE2(1)   <-------TEIL--------->ARR14(2)                          <---------YAB1 <---------------AtSPL3 xxxxxxxxxx>smallRNA(si3)                ------->TEIL    --------->YAB1<------ZmHOX2a(2) XXXXXXXXXX>MIR778            <---------GLK1(2)       <----------DOF2<---------GLK1(1) --------->ANAC58   tcacatacacaatttggtatactcagaaacgagcttctctacgaatttgtcgataacttttataataaaggagatcatcgtacgtgtccacgtaaatgtt  17315000  Previous    Next  AGI:  At2g41500.1    Description:  EMB2776/LIS (LACHESIS); nucleotide binding. Identical to U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis Thaliana] (GB:O22212;GB:Q0WNB5;GB:Q7GAP3;GB:Q7Y1Z3); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G05720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64891.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23349.1); contains InterPro domain Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); conta Range:  from: 17311208    to: 17314504    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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