Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <------NtERF2                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                              ------>NtERF2                                                                              <---------DEAR3(2)                                                                           ------>NtERF2                                                                           <---------ATERF1(1)                                                                           <-----------HVH21                                                                           <---------SPL7                                                                          <---------DEAR3(1)                                                                          --------->RAP2.3(2)                                                                          <---------ANAC46                                                                         --------->ERF1                                                             --------->ZAT18 <---------DEAR3(1)                                                            --------->ALFIN1<------NtERF2                                                           ------->MYC2  --------->ATERF1(1)                                                           <-------PIF5  <------NtERF2                                                           ------->MYC3  --------->RRTF1(1)                                                           <-------MYC2 <---------ATERF1(1)                                                           ------->PIF5 ------>NtERF2                                                          ====================bZIP_DOF                                                          <---------ANAC46--------->DEAR3(1)                                                          ====================bZIP_DOF--------->At4g35610                                                          <---------ANAC58--------->RAP2.3(3)                                                          <---------TGA1a--------->DEAR4(2)                           <---------ARR11(3)             --------->ALFIN1<---------O2<---------At4g35610                           --------->ARR11(3)             <---------ANAC58--------->O2<---------LBD16                       =============================================bZIP_DOF--------->ATERF1(1)   <--                       ---------->DOF2                    --------->TGA1a--------->RAP2.3(1)      <--               --------->At4g35610                  ---------->DOF2---------->DOF2<-----------HVH21               <---------At4g35610                  ================bZIP_DOF<---------MYB52(1) <----- ---->GT1  <-----------HVH21 <-----------HVH21 ------->TEIL<-------MYC3--------->ANAC46 <---------MYB46(3)   aacaaatcacacttgtcatctaagtaaaagatgtcatggagacacgatgaacttaaacgcgcgtgggctaaacgcgccgtcggctatcagcggatgagga  17172100                          --------->MYB52(2)                  <---------AHL20(2)                 <---------AHL20(2)                                                               ---                 <---------AHL20(1)                                                              ----  <-----------GT1--------->AHL20(2)                                                            ------ -------DAG2  <---------AHL20(2)                                                              ------- --------DOF2--------->AHL20(2)             <---------MYB52(1)          <---------YAB1     ------>ZmHOX2a(1) -ZmHOX2a(1)<---------MYB52(1)             --------->TOE2(3)        <----------DOF2<---------ALFIN1--   cttttttcaatgccattaatttttttgtttgtttcttctctcttcccttaattctcagtaacttcttctcctttctcattaacttccactctccttccta  17172200                                           <---------AHL20(2)                                       <---------AHL20(2)                                      <---------AHL20(1) ------>DAG2                 <------------CBF   <------------CBF       --------->ZAT18 ------>DOF2         --------->DAG2   --------->AHL20(1)               <---------ZAT18 <-----------GT1 >ZmHOX2a(1)<---------ANAC55(2)      <---------AHL20(2)              --------->At4g35610 -->TOE2(3)<-------TEIL    <---------YAB1  --------->AHL20(2)        *TSS <---------ALFIN1 --------->GT1      ---------->DOF2<-----------TBP                   <---------At4g35610 <-----------GT1   aaagtaaaaacgatacataaaaaaaagtgttcattgtatatatatttaaaaattggactaaaacaagagagagctcacacatctaaatttttctccatat  17172300                                                                                             --------                                                                                          --------->At4g35610                                                                                   <---------ALFIN1                                                                                 ====================                                  <---------TOE2(3)                              ------>ZmHOX2a(2)                             <---------ICU4                                     <------ZmHOX2a(2)                             --------->YAB1                                     =====================                            --------->ICU4                                      --------->PCF2                            <---------YAB1                    <---------ICU4   --------->ARR14(2)                       --------->WOX13(1)                    --------->ICU4    <---------ARR14(2)         ---------->DOF2  --------->YAB1              ---------->DOF2   ------>NtERF2 --------->AtMYB61 ---------->DOF2     <------ZmHOX2a(2)  <---------ANAC46     <---------YAB1   <------ZmHOX2a(1)    <-   tacaaaagaactaaagaagatggatcagtcatcatcaacgttgctcataaaccagagaaagtcatcatcgtctccgactaggatcccacctaagcagaag  17172400             --------->ANAC58       --------->MYB46(3)     <---------DOF5.7(2)    <---------WRKY12                          <---------ARR14(2)    <---------WRKY45                  --------->ANAC55(2)    <---------WRKY38(1)               <---------ANAC55(2)                                           - ->At4g35610 --------->ANAC58      <---------MYB52(1)               ---------->ID1     <---------ANAC58 =====HOX2a_HOX2a                 <-------GAMYB   --------->At4g35610  ------>ZmHOX2a(1)         <--- =====HOX2a_HOX2a             ------------>MYB.PH3(1)           <---------ANAC58       <---------ANAC58 -----ZmHOX2a(1)           ---------->DOF2    --------->ARR14(2)<---------ANAC58     --------->ARR11(3)   aggaagtcaacgactacgcacaaacccatcaaagtccgttacatatcaaatccgatgagagtcgagacttgtccttctaagttcagagagcttgttcaag  17172500                           <---------ALFIN1<----------DOF2                          --------->MYB46(3)               ------>ZmHOX2a(2)                         -------->P  <---------ALFIN1     <---------GLK1(1)                     --------->ARR14(2)    <---------DAG2 --------->GLK1(1)                 --------->At4g35610 --------->ANAC46     <------ZmHOX2a(2)                 <---------At4g35610--------->DEAR3(1)   --------->ARR14(3)                --------->DEAR3(1)  --------->MYB46(3)   <---------ARR11(3)               --------->ATERF1(1) <------NtERF2         --------->ARR14(2)               --------->RAP2.3(1) --------->ATERF1(1)   <---------ARR14(2)              ------>NtERF2--------->AtMYB61             <---------ARR14(3)              <---------ATERF1(1) ------>NtERF2<---------At5g28300              <---------RAP2.3(1) --------->PCF2         <---------AGP1             <---------DEAR3(1)   <---------ATERF1(1)--------->LBD16 <---------ANAC58             --------->ANAC58    --------->DEAR3(1) --------->DEAR3(1)  <-----------HVH21             --------->ANAC46    <---------ETT(2)--------->DEAR3(1)  <---------ANAC58             --------->ANAC58   --------->ATERF1(1) <---------ANAC46 <---------ANAC46        <---------WRKY38(1)*TSS<-----------HVH21--------->MYB46(3)--------->ORA47(1)                <       --------->WRKY18(1)<---------MYB55(2)  <-----------GT1 <---------ALFIN1                    <--      <-----------HVH21------>ZmHOX2a(2)<---------ALFIN1<---------CCA1(2)                  ----------  --------->MYB52(1) <---------ARR14(2)--------->MYB46(3)--------->ARR11(3)       --------->At4g35610 ---------->HVH21------>NtERF2 <---------ATERF1(1)------>NtERF2  --------->DEAR3(1)    ------->TEIL - ------ARR11(3)<------NtERF2  --------->DEAR3(1)--------->DEAR3(2)<---------SPL7<------NtERF2   <----   aactcaccggtcaagacgccgctgatctaccaccgtcgcccaccacttttaccgccgtagatctccaccgtccgtgtgagtcggagatgaacttagagcc  17172600                                                                          <---------ARR11(3)                                                                          --------->ARR11(3)                                                                         <------MYB83                                                                         <------MYB46(1)                                                                      <------NtERF2               --------->ALFIN1                                      <---------DEAR3(2)             <---------ANAC58                                       <<<<<<<<<<AtTINY2             <---------ANAC46                                       <---------At1g77200             <---------ANAC58                                       --------->ETT(2)            <-------TEIL                                            <---------RAP2.6(2)            <---------DEAR3(1)                                      --------->ETT(1) <---------AtLEC2       <---------YAB1     <------ZmHOX2a(1)       --------->RAP2.6(3) ---------MYB46(3)  ----------->GT1 <---------MYB46(3)             --------->DDF1 -------MYB52(1)--------->REM1(2)<-------GAMYB                 --------->At4g35610 >DOF2  <---------AtMYB61     <---------At5g28300            <-----------RAV1(2) -------->MYB55(2)<---------ANAC46<---------MYB52(1)        ------>ZmHOX2a(1)<----------DOF2 -----MYB46(3)--------->LBD16<-----------GT1   ----------->GT1 <---------At4g35610      <-----------GT1   gttggatggagaggtccgtggagagtattattcaccgttggatgaggaagtgtttaatgctcctcagatgtcggcaggtctttctggttttttctcgtct  17172700                 <----------DOF2             <---------TOE2(3)             <-----------------AGL1            <-----------GT1            <---------DOF5.7(2)          --------->DOF5.7(2)         --------->YAB1       <---------MYB46(3)                                                <----         --------->TOE2(3)--------->ATHB12              ------->TEIL                         <-------   <-----------GT1    <------ZmHOX2a(1)              <---------YAB1                 <------ZmHOX2a(2)   ggattttacaatgttaacgctttaggaagcattggttctctctgaattttaaactatgaatgttttgtttcggcactgaaacaccgatcacgaagaataa  17172800                                         <---------ARR11(3)                                         --------->ARR11(3)                                         --------->AHL20(1)                                     ----------->GT1                             ----------------->AGL2                            <---------ANAC58                             ----------------->AGL3                            <---------ANAC58                             <-----------------AGL2                           <---------TOE2(3)                             <-----------------AGL3                          <-----------GT1                             --------->TOE2(3) <---------ANAC55(2)       <---------AHL20(2)         - -------GT1  <---------TOE1(3)--------------->AGL15                      --------->AHL20(2)         < --KAN4(2)   <---------TOE2(3)<---------------AGL15                      --------->ATHB51          <-   accatctatagttttagggttttcatcaaaacctatatatggatatattacatatatagttttttttctcgcgaattatttacgtttgtgagtatatata  17172900                                                                                               ------                                                                                               ------                                                                                        <--------HAHB4                                                                                        <---------ICU4                                       <---------ICU4                                   -------->HAHB4                                       --------->YAB1                                   --------->ATHB51                                      --------->ICU4                                    <--------ATHB1                                    <---------ICU4                                      --------->YAB1                                    --------->YAB1                                     <---------YAB1                                   --------->ICU4                         <---------REM1(1) <--------                                   <---------YAB1                   --------->ATHB12   --------->ICU4                             <---------AHL20(2)                 <---------ANAC46       <---------ATHB51                ---------->ID1  <---------YAB1                  <------MYB46(1)   --------->ANAC55(2) -------->ARR11(3)       <---------AHL20(2)                     <------MYB83      ----------->GT1 ---------ARR11(3)      <---------AHL20(2)                      ----------->GT1   <---------ANAC55(2) --------GLK1(1)<---------TOE2(3)--------->YAB1                --------->MYB59   --------->MYB59   gaaatctttcatttgtttgtggtttttttattttataataataatcaaaccgtattagttttagttgggtttattggtgtagttatgtaataattaacct  17173000  Previous    Next  AGI:  At2g41178.1    Description:  other RNA Range:  from: 17171873    to: 17172527    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g41180.1    Description:  sigA-binding protein-related. similar to SIB1 (SIGMA FACTOR BINDING PROTEIN 1), binding [Arabidopsis thaliana] (TAIR:AT3G56710.1); contains InterPro domain VQ (InterPro:IPR008889) Range:  from: 17172269    to: 17173103    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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