Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------DOF5.7(2)  <---------MYB52(1)  --------->DOF5.7(2) --------->TOE2(3)               ------->MYC3 <-------GAMYB                   ------->MYC4 -------->MYB52(2)               ------->MYC2 ---------MYB46(3)    --------->ZAT14               --------->ANAC58 ------TEIL           <---------ZAT14               --------->ANAC58 -------MYB52(1)     <----------DOF2             <---------SPL7 -----HSFB2a(1)      <---------DAG2            <---------YAB1 -----ANAC58      <---------ALFIN1      <---------ATHB12 -----ANAC58--------->MYB46(3)   <-------MYC2 <-----------HVH21              <-----------GT1 ---DOF5.7(2)  --------->MYB46(3)<-------MYC3--------->YAB1           <-------TEIL   gttcgttaacttcaacaacaacactttactaaacatgtgctaatcaattgtcatacgcttgtatttcttcgattcatttttatcttatgcaagtgttttc  17144800             <---------AHL20(2)                                                  --------->MYB59         --------->AHL20(2)                                                 --------->AHL20(2)     --         <---------AHL20(2)             <---------LBD16                    <---------AHL20(2)     ---        <---------AHL20(2)      --------->ZAT18                            --------->AHL20(2)     ---        --------->AHL20(2)      <---------ZAT18                    <---------MYB59             ------     --------->ATHB12          <------ZmHOX2a(1)                   --------->TOE1(3)          -------    <---------YAB1          <---------ICU4                         --------------->AGL15   --------->ZAT18  --------->YAB1     <---------AtLEC2  ------>ZmHOX2a(1)           --------->TOE2(3)       <---------ZAT18   tctattatgatttatttagttttgcataaataaggacactccttcggagtcagtataagaaaactataacctaaaatataaattaggcaaatgtccactc  17144900                                                                                          <---------WOX13(1)                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                   ------->GAMYB                                                                                  <---------ATHB12                                                                                  --------->MYB46(3)                                                                                 ------>MYB83                                                                                 ------>MYB46(1)                                                                                 -------->P ------->MYB46(3)                     --------->AHL20(2)                       --------->AtMYB61   -- ------>ANAC58       <---------AHL20(2)                                        <---------MYB111(1) == ------>ANAC58       --------->AHL20(2)<---------AHL20(2)                     <---------MYB52(2)  <-- --->MYB46(3)  ----------->GT1        <---------AHL20(2)                      --------->MYB46(3)  <-- -->ANAC46>>>>>>>>>>>>>>>>>LFY <----------DOF2                                --------->DEAR3(2)<----   acccatccaaaattccattgtaaataaatgtttctttcaaataaatgaaaaaaaaaaaaaaaaacaagttggaagaaggaaccaaccaagtaattgccag  17145000                                                                 <---------ANAC58                                                                 <---------ANAC46                                                                 --------->ANAC55(2)                                                   --------->TOE2(2)          --------->DAG2     <---                                  <---------bZIP60(2)            <---------ANAC55(2)             <---                                  <---------O2     --------->TOE1(2)    ------->MYC3            <----                                  <---------TGA1a<------ZmHOX2a(2)      ------->MYC2            <----        ------>NtERF2             =====================MYC_MYB   <---------ANAC55(1)           ------      <------NtERF2          --------->At4g35610<---------ARR14(2)      <-------MYC2     --------->CCA1(2)      --------->ATERF1(1)    <---------At4g35610--------->ARR14(2)      <-------MYC3    --------->ARR14(2)     <---------ATERF1(1)     --------->ZAT2    ------->GAMYB <------------CBF---------->DOF2   ------    <---------DEAR3(1)  ================================HOX2a_HOX2a----------->HVH21    <---------ARR14(2) -------->DOF2          <------ZmHOX2a(1)     --------->MYB46(3) <---------ANAC58    <---------TOE1(3) ===========================================bZIP_DOF  <---------ANAC46------->TEIL   <---------TOE2(3) -------WRKY38(1)   ---------->DOF2         --------->MYB52(1)  <-----------------------TaNAC69(2) -------WRKY12      ========================bZIP_DOF------>ZmHOX2a(1)<---------DOF5.7(2)--------->ARR11(3) -------HVH21 <---------ALFIN1 ----------->HVH21--------->ARR11(3) --------->DOF5.7(2) <------ZmHOX2a(1)   tcaaaggaggcgactcacacttgaaaggataagctgacatggcagacaacgatcctgcgtagaaattgcgtgaacgtggaaaagtttgaggatatagccg  17145100       --------->AHL20(2)       <---------ATHB12 ----------->TBP       <---------ATHB51<---------AHL20(2)       <---------AHL20(2) ------MYB52(1)       --------->YAB1 ---NtERF2   --------------->AtSPL8 -------HVH21<---------------AtSPL8 -----RAP2.6(3)       --------->AHL20(2)           *TSS --->RAP2.6(2)       <---------YAB1          <-------TEIL                         --------->YAB1 --->ANAC46 <---------ANAC46             ------>ZmHOX2a(1)                 <----------DOF2   tcatttcaaataattcgggtactattatataaggcttcaagtcctggttcgtagtacaaattgtctcacaaactcttctttcagtcatcacagaaaacaa  17145200                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->ZAT18                <---------At4g35610                --------->At4g35610            <---------ARR14(2)                          <---------TOE1(3)            --------->ARR14(2)                          <---------TOE2(3)           <------NtERF2                               <-----------RAV1(2)          --------->LBD16                           <----------DOF2         <---------ANAC58                         --------->HSFB2a(1)         <---------ANAC58                        --------->GLK1(2)         <---------ANAC46      --------->At4g35610<---------HSFB2a(1)                             <--        <---------LBD16     <------ZmHOX2a(2)    <---------ARR14(2)       --------->YAB1<-------TEIL <<<<<<<<<<<<<<<<<LFY ----------->HVH21      --------->ANAC46--------->KAN4(2)       ----------->GT1   aaaaaacaatggcggataagctcactgacgatcagattacagaatacagggaatctttcaggttattcgacaagaatggtgatggtatggttcatcaact  17145300                                      --------->ANAC58                           --------->ARR11(3)                                   <------MYB83        -                           <---------ARR11(3)                                   <------MYB46(1)     <                          --------->YAB1                                       <---------TOE1(2)    -                      <------ZmHOX2a(2)         --------->ICU4          <----------DOF2             <               <-----------RAV1(1)    --------->ANAC58                  <---------DAG2    <---------ANAC55(2)          --------->YAB1 --------->ICU4     --------->AHL20(2)          <---------------AGL15  ------      <---------AHL20(2) <---------YAB1    <---------ATHB12       --------->ATHB12        <---------YAB1     --------->AHL20(2)--------->YAB1 --------->ANAC46          ------>ZmHOX2a(1)         <----------ID1 --------DOF2  --------->ICU4       ---------->DOF2    --------->ZAT6   --------------->AGL15 -------   ctttccatttaatcgtaatgttggatcatgatcatcttcaaagcaatgaaatgactaacacaagtccttgattactttttgtaggttccattacgaaaaa  17145400                                                 ------>ZmHOX2a(2)                                               --------->ARR14(2)                                               <---------ARR14(2)                                               <---------ARR11(3)       --------->SPL7                          --------->ARR11(3)                                  <- -------->At4g35610                        --------->At4g35610                               -------- ---------ZAT2                             <---------At4g35610                              --------- -------->ZAT2  <---------ANAC46    ----------->RAV1(1)               <---------At4g35610   <-------- ---------GLK1(1)        ----------->GT1---------->DOF2<------ZmHOX2a(1)  --------->ARR14(2)--------- --->DAG2       <---------ANAC58   <----------ID1=============HOX2a_HOX2a <---------ARR14(2)--------- --->DOF2       <---------ANAC58  --------->DEAR3(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <--------   ggagctcggtaccatgatgcgttcaatcggtgaaaaaccgacaaaagctgatcttcaggacttgatgaacgaagcggatttagatggtgatggaaccatc  17145500                                                           --------->ZAT6                                                        ----------->HVH21                                                      --------->ANAC46                                                      --------->O2                                                      --------->bZIP60(2)                                                      <---------O2                                                      --------->TGA1a                                                     ------>NtERF2                                                     --------->LBD16                                                     <------NtERF2                                                    --------->DEAR3(1)                                                    <---------ALFIN1                                                   --------->DEAR4(2)                --------->ZAT18                                                   <------NtERF2                     xxxxxxxxxxxxxxxx                                                   --------->ATERF1(1)             <---------At4g35610         --------->ARR11(3)                       <---------RAP2.3(1)              --------->At4g35610     --------->LBD16                              <---------DEAR4(2)           --------->ARR14(2)   <---------LBD16                               ===============MYC_MYB        <---------ARR14(2) --------GLK1(1)                                 --------->DEAR3(1)           <------NtERF2 ->TOE1(2)       --------->ANAC55(2)             ------->GAMYB               --------->LBD16 >MYB46(3)       <---------ANAC58            ===================bZIP_DOF    <---------ANAC58 -HSFC1(2)       <---------ANAC58            ---------->DOF2                <---------ANAC58 >HSFC1(2)     <---------ANAC46          <---------YAB1<-----------HVH21    <---------ANAC46      --- >HSFB2a(1)<---------ANAC58              --------->ICU4<-----------TGA1    <---------LBD16     <----- -HSFB2a(1)<---------ANAC58    --------->GLK1(2)--------->MYB46(3)  <<<<<<<<<<<<<<<<<LFY ----------->HVH21   gatttccctgagttcttgtgcgtaatggctaagaatcaaggtcatgatcaagcgccgcgtcacactaaaaaaacaatggcggataagctcactgacgatc  17145600                   <----------DOF2                 <---------HSFB2a(1)                <---------ARR14(2)                                                            <------                --------->GLK1(2)                                                             -------         --------->ZAT14                                                                     --------         <---------ZAT14                                                                 <------ZmHOX2a(2)       <---------ZAT14 <---------TOE2(3)                                          --------->ICU4       --------->ZAT14 <---------TOE1(3)                                     --------->YAB1 <-------- xxxxxxx>smallRNA(si3)<-----------RAV1(2)                        <----------DOF2  <-----------RAV1(1) ------>At4g35610--------->HSFB2a(1)     --------->YAB1<-------TEIL      <---------AHL20(2) --------- -ZmHOX2a(2)--------->ANAC46--------->KAN4(2)       ----------->GT1     --------->AHL20(2)--------->YAB1   agattacagagtacagggaatctttcaggttattcgacaagaatggtgatggtatggttcatcaactctttccatttaatcgtaatgttggatcatgatc  17145700  Previous    Next  AGI:  At2g41100.1    Description:  TCH3 (TOUCH 3). Identical to Calmodulin-related protein 3, touch-induced (TCH3) [Arabidopsis Thaliana] (GB:P25071;GB:Q38972;GB:Q39064;GB:Q8H1A0); similar to CAM7 (CALMODULIN 7), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G43810.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to CAM5 (CALMODULIN 5), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin-like protein [Branchiostoma lanceolatum] (GB:CAA04528.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 17145151    to: 17146688    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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