Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <-----------GT1                                                                                 <---------ICU4                                                                                --------->ICU4                                                                              <---------ICU4                                                          <-------TEIL        <--------ATHB1                                                          ------->TEIL        --------->YAB1                                                      <---------------AtSPL8  <---------AHL20(2)                                                      --------------->AtSPL8  --------->AHL20(2)                         <---------YAB1               <---------TOE2(3)       <---------AHL20(1)               <-----------GT1                      <---------AHL20(2)       --------->ICU4              <---------CCA1(2)                     --------->AHL20(2)     --------->YAB1 --------->MYB46(3)      <<<<<<<<<TBF1    <---------ICU4           <---------AHL20(2)     <---------ZAT6    -------->P  <-----------GT1     --------->ICU4            --------->AHL20(2)     ----------->GT1  --------->WOX13(1)   tttttttcttcttcttatatccccattatgaacaaggttttgttttgtttttaattaatgtacatactacattgtgttaataatttttatcaaccactag  17118100                    =======================HOX2a_HOX2a                    ------>ZmHOX2a(2)                  <---------ARR14(2)                  --------->ARR14(2)                  <---------ARR11(3)                            <---------HSFC1(1)                  --------->ARR11(3)                            <---------HSFB2a(2)                 <------ZmHOX2a(1)                              --------->HSFC1(1)              -----              =============HOX2a_HOX2a                         <---------LBD16                  <----              <------ZmHOX2a(1)                              <---------AGP1        --------->TOE2(3)           <-----------RAV1(2)      <------ZmHOX2a(1)  --------->MYB59 --------->ANAC46  <----------DOF2        --------->DAG2       ------->TEIL    <----------ID1  <---------ARR14(2)    <----------DOF2       ---------->DOF2<---------------------WRI1 ---------->DOF2--------->HSFB2a(2)--------->TOE1(3)   gttatgggataaagcaggaggatcgtctatgcatccaaggacaagaaggaacaaagttatgtagttctggaacaagtcgcgactgccttaacttttgttt  17118200                  <---------ANAC58         <-----------RAV1(1)         <---------YAB1                                                                            --      --------->ARR14(2)                                                                           <-      <---------ARR14(2)   <---------YAB1                      ------>ZmHOX2a(1)                  <--    <---------MYB46(3)<---------ZAT6                   <---------ANAC58                      -------- <---------ANAC58 <---------ANAC46                     <---------ANAC58                      <------- <---------ANAC58 <---------ANAC58                     <---------ANAC46                      -------- ---->AHL20(2)   <------NtERF2                        ---------->ID1         --------->YAB1  <------- -----AHL20(2)  <---------MYB46(3)            <-----------RAV1(1) ------>ZmHOX2a(1)     <---------MYB46(3)   aattcgtggttatgctggtggctcgtgttatgcttatactcttgatcaatgttgttgtcgtattcctcctccaaaactaaaataatgtattggttacatc  17118300       --------->ANAC58       --------->ANAC58  --------->HSFB2a(2)  <---------HSFB2a(2) ------->ARR14(2)   <---------ATHB12                                                              <-- --------ARR14(2) --------->WOX13(1)                                                             ---- -------CCA1(2) --------->AHL20(2)                                                               <--- ->REM1(1)      <---------AHL20(2)                                                        ----------- --bZIP60(1) <---------AHL20(1)                                                        <------ZmHOX2a(1) ->bZIP60(1) --------->AHL20(1)                          <---------ARR11(3)          <---------TOE2(3) --TGA2(1)  --------->AHL20(2)                           --------->GLK1(2)           <---------TOE1(3)   atatccagaacgaaatatataaatcaatttgggcaatagtttctgaaaaatttgaacaaaatctaaaatcaaatcgaaatacaacttaaggaatgtaaaa  17118400                                                             ------------>CBF                                                           <---------At4g35610                                                         <---------ALFIN1                                                      <------NtERF2                                                      ------>NtERF2                                                     ------>NtERF2                                                     --------->DEAR3(1)                                                     <---------ATERF1(1)                                                    <---------DEAR3(1)                                                    <------NtERF2                                                    --------->ATERF1(1)                                                   <------NtERF2  --------->ARR14(2)                                                   --------->At4g35610                                                   <---------At4g35610                                                   <---------ATERF1(1)                                <---------ANAC55(2)--------->ATERF1(1)                                --------->ANAC55(2)--------->LBD16<-----------ARR10                             <---------YAB1        <---------LBD16--------->ARR11(3)              <--                           -------->ATHB1          ------>NtERF2  <---------ARR11(3)            <----                           --------->YAB1         <---------ATERF1(1)                         -------                           <---------ICU4         --------->DEAR3(1)                    <---------ANAC55(2)                          --------->ICU4   <------------CBF--------->ZAT2               --------->ANAC55(1)    <------ZmHOX2a(1)     <---------AHL20(2)     --------->ATERF1(1)                    --------->ANAC55(2) -------AHL20(2)          --------->AHL20(2)     <---------DEAR3(1)                     --------->ANAC58 ----->AHL20(2)           <---------ATHB51--------->ATHB12 --------->At4g35610          --------->ANAC46 ------AHL20(2)     --------->ZAT6        --------->ATHB51 <---------ZAT2               --------->ANAC58 >GT1            <---------ATHB12        <---------YAB1--------->PCF5       --------->ZAT6  <--------   taaataggaagtcagtccaataacacaaattattatgtaacacattattgggccgcggcccagctcaatatctacttaacattactaaacaagtaattgt  17118500                                           --------->ANAC58                                      --------->ANAC58                                      --------->ANAC58                         <---------At4g35610                         --------->At4g35610                         --------->ATERF1(1)                            --------->MYB52(1)       --------->ALFIN1*TSS--------->RAP2.6(2)                       <---------ICU4 ----------CBF        <------ZmHOX2a(1)    --------->ANAC58          --------->YAB1          <------- -----YAB1  <---------ANAC46          --------->ANAC46              <---------ATHB12       <--------- -->YAB1    <---------ANAC58      ---------->DOF2                   <---------ATHB51--------->GLK1(2) ----CBF    <---------ANAC58------>NtERF2 ------>NtERF2    <----------DOF2         <---------GLK1(2)   aattgagaggtgtttcgtcttggaggaagcggccattgaagcgccacgaagtctcattcttctttctccaataataacagagagcgattctttttactat  17118600                                                                                          ------>ZmHOX2a(2)                                                                                         --------->GLK1(1)                                                                                        <-----------ARR10                                                                                        <---------ARR11(3)                                                                                        <---------AGP1                                                                                        <---------ARR14(2)                                  <---------ARR11(3)                                    --------->ARR11(3)                                  <---------GLK1(2)                                     --------->ARR14(2)                                  --------->ARR11(3)                                   <---------CCA1(2)                            --------->At4g35610                                        <---------ARR14(1)                            --------->ZAT2                                            --------->LBD16                      -------->P  --------->ARR14(2)                                 <---------ANAC46                      ------>MYB83<---------ARR14(2)             --------->TOE2(3)   <------NtERF2                      ------>MYB46(1)               <-----------GT1      --------->ANAC46<------ZmHOX2a(2) --YAB1          <-----------GT1----------->ARR10<---------DAG2 ----------->GT1     <---------LBD16 < --GT1    <---------YAB1    <---------ZAT2 --------->ANAC46   ------->TEIL       <-----------HVH21<--   tccaatttcattttcaatgttaccaacacgagctcagattttcatacaccaatttttctatatgcatcgttatacacagaagcagtcgcggatctcaatt  17118700                                                                                       <----------ID1             <-----------------AGL1                                  <---------HSFB2a(2)             <-----------------AGL2                                  >>>>>>>ZML2     --------->ANAC46             <-----------------AG                       <--------HAHB4             --------->CCA1(2)           --------->ARR14(2)                           <---------ICU4            --------->ARR14(2)           --------->GLK1(2)  <---------MYB46(3)       <------ZmHOX2a(2)      <---------ANAC46           <---------ARR14(2)------>ZmHOX2a(2)      <---------MYB46(3)        <---------ANAC55(2)   -  --------->ALFIN1  <---------TOE1(3)            <---------MYB46(3)  --------->HSFB2a(2)          <-- ---------At4g35610 --------->MYB59             <---------AtMYB61 --------->ARR11(3) --------->ANAC58 ---------RAV1(2)   <---------TOE2(3)     <-----------GT1         <---------ARR11(3) --------->ANAC58   tcaggtgtttgcgattccgatttaggtttgatcggttgaaattttttccgatggtggatcattaccaagttctaggcgttacgagaaacgcgacgaagaa  17118800                                                                                            <--------                                                                                          --------->SPL7                                                  <---------ZAT18                        --------->ALFIN1                                                  --------->ZAT18                       <---------SPL7                                               --------->ANAC58                        --------->DEAR3(1)           <---------ANAC58                    --------->ANAC58                       <------NtERF2           <---------ANAC46                  ---------->DOF2                         ------>NtERF2           <---------ANAC58                 --------->ARR14(2)                      --------->DEAR3(1)          <-------TEIL          --------->ANAC55(2)--------->ANAC58               <-----------TGA1     <---------TOE2(3)          <---------ANAC55(2)--------->ANAC58     <-------TEIL<---------ALFIN1    ---------->DOF2  <---------ARR14(2)     <---------ARR14(2) --------->LBD16   --------->ANAC58 ---------->GT1      --------->ARR14(2)   --------->LBD16     --------->ANAC46   --------->ANAC46 <-- ----ZmHOX2a(1)   <------ZmHOX2a(1)     <---------LBD16      <---------LBD16     --------->ANAC58 <--   ggaggttaaagatgcgtttaggagattggcgattaagtatcatccggataagcacgctcagtctccggagcatgttcgtcataacgccaccgtgcggttt  17118900                                                                                 ------------------>SPL14              <---------SPL7                                                  <----------DOF2             <---------ANAC58       ------>ZmHOX2a(2)                        <---------ANAC58             <---------ANAC46   <---------YAB1                               <---------ANAC58    <---             <---------ANAC58--------->ICU4                               <---------WOX13(1)    <----            --------------->AtSPL3 --------->At4g35610                 <---------YAB1          <-----            <---------------AtSPL8<---------ARR11(3)                --------->ARR14(2) --------->SPL7            <------NtERF2<---------YAB1 ---------->DOF2             <---------ARR14(2)<---------SPL1(1) -ANAC46  <---------DEAR3(1)<---------WOX13(1)                      --------->GLK1(2)<---------SPL7 -------TOE2(3)  <---------TOE1(1)--------->ARR11(3)               <---------GLK1(2)--------->DEAR3(1) -------TOE1(3) --------->SPL7--------->YAB1                  <--------P--------->ATHB12     <-------   aagcttgtatcggaggcgtacgaagttttgaatgatgatctgaaacgcgcgtcttataacgctggtagcgattctgattgctttcgccgtacgagcggtt  17119000  Previous    Next  AGI:  At2g41997.1    Description:  LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40995.1); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609) Range:  from: 17117906    to: 17118285    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g41000.1    Description:  (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51); heat shock protein binding / ubiquinol-cytochrome-c reductase. Identical to Chaperone protein dnaJ 72 (ATJ72) [Arabidopsis Thaliana] (GB:O80684;GB:Q84MC8); similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G39960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18309.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like; (InterPro:IPR008027) Range:  from: 17118523    to: 17120714    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version