Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                      <--------------                                                                                      ---------------                                                                                     <---------------                                                                                     ----------------                         --------->ZAT2                                              ----------------                         <---------At4g35610                                         <---------------                    --------->YAB1                                                   <---------------                <---------MYB52(2)                               --------->ALFIN1    <---------------                --------->MYB46(3)                              <-------MYC3         ----------------             <------ZmHOX2a(1)           <----------DOF2        ------->MYC3         ----------------           --------->LBD16          ---------->ID1             <---------O2   <---------ANAC58  <----    ----------------->AGL1        <-----------RAV1(1)     <---------HSFB2a(2) <---------ANAC58 <----- ----YAB1 <---------LBD16--------->At4g35610              --------->HSFB2a(2) <---------ANAC46 ------   aatgagtccaatccaggaacaaacatgagctgtgttttgttgtcttttcacttagaagttctaaaacgtggctcttacttccttgttccctaatttggat  17049300 ---->GLK1(1) -AGL15 >AGL15 --AGL2 ->AGL1 ->AGL2 --AG                                   <---------ARR11(3) --AGL1                                 --------->ARR11(3)           <---------YAB1 --AGL3                   ------>ZmHOX2a(1)                        --------->YAB1 ->AG                     <----------DOF2     --------->ANAC58  <---------ICU4--------->ZAT18 ->AGL3---------->DOF2   --------->TOE2(3)    --------->ANAC58 --------->ICU4 <---------ZAT18 -----GLK1(1)        ------>ZmHOX2a(1) --------->RVE1(1)      <---------AHL20(2) ----GLK1(2)   <---------HSFB2a(1)     --------->CCA1(1)     --------->YAB1   --------->ZAT14       - --->ARR14(2)  --------->HSFB2a(1)   --------->AHL20(2)  <---------AHL20(2)   <---------ZAT14  ------   tcccgtttaaaaaggaaatgttcctatcctttacaaaaaaaaaatctcaagacaaacattttataaaaattataactgagtacacattgtctatctatct  17049400        <---------At4g35610       --------->HSFB2a(2)        --------->At4g35610       <---------HSFB2a(2)           <------ZmHOX2a(2)       ------->TEIL  <------ZmHOX2a(1)             <---------ANAC58 -------->MYB46(3)   --------------->AtSPL8        <---------ANAC58 --->TOE2(3)         <---------------AtSPL8        <---------ANAC46           ------->TEIL   caacaattgcatctgactaattaggagtacaattctctcgaagtttgtatatcgcttggaatttggatcaagacaatttgaatctctctcaaaactaatc  17049500                                                                                     ------>ZmHOX2a(1)                  <----------DOF2                       --------->ZAT6       --------->GLK1(1)              <-------MYC3                       <----------DOF2             <---------GLK1(1)              ------->MYC3                   <-------MYC3                   <---------ARR14(2)         <-----------HVH21                   ------->MYC3                   --------->ARR14(2)        --------->ANAC46 --------->ZAT6 <-----------HVH21              --------->MYB52(1)<---------AHL20(2)   tcttcaaaacccatcacatgctttctaccactaaaacaggcccatcacatgctttctacctctaaaacaggcccatcggatatgttcctatattttttgt  17049600                                                            <---------SPL7                                                           <---------O2                                                           ============================bZIP_DOF                                                           ==============MYC_MYB                                                --------->AHL20(1)                                                --------->AHL20(2)                                                <---------AHL20(2)                               <---------AHL20(1)     --------->At4g35610                               --------->AHL20(1)     <---------At4g35610                --------->ANAC58               <---------AHL20(2)           ---------->DOF2      ----                --------->ANAC58            --------->AHL20(2)      <---------WRKY18(1)          <---          --------->YAB1     <---------AHL20(1)--------->AHL20(2)  --------->WRKY12        --------->TOE2(3)    ----------->GT1         --------->YAB1  <---------AHL20(2)     --------->WRKY38(1)  <-----------GT1   --------->DAG2   --------->ANAC58       --------->AHL20(2)    <-------GAMYB      <---------YAB1  ---------->DOF2   --------->ANAC58      <---------YAB1   <---------TGA1a  =========================   ccgataaagttataagaagcgcaaggcccataatatttttagttattaaaaaaattagcagacgtagggttgacttaaaaaagactcttattacattagt  17049700                       <------------CBF                     --------->ARR14(2)              -------->ABF1              <-------MYC3              ------->MYC2              ------->MYC3              <-------MYC2              <-------PIF5              <-------MYC4              ------->MYC4              ------->PIF5             --------->O2             --------->TGA1a  *TSS             ==============================================bZIP_DOF             <---------ANAC55(2)             --------->ANAC55(2)             <---------O2    <---------ANAC58  --------->ANAC58   <---------ARR14(2)                               <---------ZAT6  --------->ANAC58   --------->ARR11(3)         ---------->DOF2    --------->HSFB2a(2)  ----------->GT1 <---------ANAC46        ----------->GT1 ----------->ARR10 --------->ARR14(2) ----->ETT(2)--------->ANAC46<---------ANAC58   <---------ICU4     <---------HSFB2a(2)      ------>ZmHOX2a(1) ------ETT(2)<---------TGA1a<---------ZAT18    --------->ICU4--------->GLK1(2)     <<<<<<<<<TBF1 ======================bZIP_DOF <-------TEIL --------->YAB1 <---------GLK1(2)   <<<<<<<<<TBF1   cgacaagtaaaaaacacgtggcatatattgtgcgttcgtagagactgtaataaagacggagagattcttctagagtcagttcttcttcttcatcctcttc  17049800                                                                          <---------At4g35610           =================================HOX2a_HOX2a                   <---------ZAT2  ------>MYB83           ------>ZmHOX2a(1)                   <---------HSFB2a(2)        --------->At4g35610       --------->ARR14(2)                      --------->HSFB2a(2)        <---------GLK1(1)       <---------ARR14(2)              --------->TOE2(3)                  --------->ZAT2  ------>MYB46(1)    <---------ALFIN1                 <------ZmHOX2a(2)                <---------WOX13(1)<---------MYB59   --------->LBD16                  --------->ARR14(2)              --------->ATHB12    --------->AtMYB61  --------->ANAC46                  <---------ARR14(2)             <---------YAB1    <-----------GT1 --------->ANAC46       <---------GLK1(1) <---------ICU4        <----------DOF2  <----------DOF2   ttccccccaaatcctctctcgctagggtttctcattccgatccataattctagatgtcgaggtattcttttgattgagctccgcttttaaccaaaccatc  17049900                <---------WOX13(1)              --------->ATHB12              <---------ICU4                                      ----------->GT1             --------->ICU4                                       --------->ANAC55(2)             <---------YAB1                                      <---------TOE2(2)           --------->YAB1                                       <-----------RAV1(2)                <- <---------GLK1(2)                                      <---------GLK1(1)                       <---- --------->ARR11(3)  <------ZmHOX2a(2)            <----------DOF2<---------TOE1(2)<----------DOF2----   ttagattttgttttcatgattggatcactgaattgaaattcttctcttctgtctttagatttcttctcaggtaattttgctctgctttgtgaagcgtttt  17050000              <---------GLK1(2)       <---------ARR14(2)              <---------ANAC58       <-----------ARR10               <---------ANAC58       --------->ARR14(2)          <---------ANAC58    ------>ZmHOX2a(2)    <---------AHL20(2)  --------->At4g35610                       <---------ANAC58 --------->ATHB12        --------->AHL20(2)  <---------At4g35610                       <---------ANAC55(1) --------WOX13(1) --------->HSFB2a(2)  <---------ANAC46          --------->ANAC58      <---------ANAC46 -----YAB1 <-----------GT1<---------AHL20(2)------->TEIL<---------MYB52(1)--------->LBD16     <------ ----->ATHB12<---------At4g35610   <---------ANAC58  <-------TEIL--------->ANAC58      <---------ANAC58   cattgatcggattttagcttctcgtatttaaattgatacttgtgtgcatctgaaattcgtttggattaagccattccgaattttgagttacttgtgagtt  17050100                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <---------YAB1                                       --------->AHL20(2)                                  --------->ICU4                                 --------->ANAC58                                        --------->YAB1                                 --------->ANAC58                                        <---------ICU4                                 --------->ANAC46                                  <---------WOX13(1)                               <---------ALFIN1                                   <---------ANAC58      <-----------GT1       <-----------GT1                                       <---------ANAC58  <   <---------MYB46(3)  --------->AHL20(2)                                        --------->ATHB12   -   ----------->GT1     <---------AHL20(2)                                      <---------WOX13(1)   - <-------GAMYB        --------->AHL20(2)                                     --------->ATHB12      -- -GAMYB    <-----------GT1 <-----------GT1                         --------->At4g35610   <--------HAHB4   gtgagttgttacattaccctctcatttattttcccactccataaattggtttcagttagaaattgtagtagctacaaggtgattgattgcatcattattt  17050200  Previous    Next  AGI:  At2g40830.1    Description:  RHC1A (RING-H2 finger C1A); protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G56580.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G56580.2); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G56580.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO67297.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (In Range:  from: 17049730    to: 17051937    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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